Subset: NucleicAcidSequenceSource
URI: NucleicAcidSequenceSource
Slots in subset
| Slot | Description |
|---|---|
| batch_ids | Identifiers for any form of batch or 'group' that the samples is associated w... |
| biocultural_label | Relevant biocultural labels defined by the local contexts project (https://lo... |
| biotic_relationship | Description of relationship(s) between the subject organism and other organis... |
| chrono_age_protocol | A description of or reference to the methods used to determine the earliest_c... |
| chrono_age_remarks | Notes or comments about the earliest_chrono_age and latest_chrono_age |
| cultural_era | The cultural era approximating to the period in which the archaeological rema... |
| earliest_chrono_age | The maximum/earliest/oldest possible age of a specimen as determined by a dat... |
| earliest_chrono_sys | The reference system associated with the earliest_chrono_age |
| encoded_traits | Should include key traits like antibiotic resistance or xenobiotic degradatio... |
| estimated_genome_size | The estimated size of the genome prior to sequencing |
| extrachrom_elements | Do plasmids exist of significant phenotypic consequence (e |
| geological_epoch | The geological epoch approximating to the period within which the specimen or... |
| host_disease_stat | List of diseases with which the host has been diagnosed; can include multiple... |
| host_preserv_state | Description of the state of the sampled (ancient) organism/host as originally... |
| host_spec_range | The range and diversity of host species that an organism is capable of infect... |
| isol_growth_condt | Publication reference in the form of pubmed ID (pmid), digital object identif... |
| latest_chrono_age | The minimum/latest/youngest possible age of a specimen as determined by a dat... |
| latest_chrono_sys | The reference system associated with the latest_chrono_age |
| nucl_acid_extr_date | The date when the nucleic acid extraction was started from the sample materia... |
| num_replicons | Reports the number of replicons in a nuclear genome of eukaryotes, in the gen... |
| pathogenicity | To what is the entity pathogenic |
| permit_authority | Name of the authorit(ies) or institution(s) that granted sampling and analysi... |
| permit_date | Date on which a permit was granted |
| permit_id | A permit ID, code, or any form of identify provided by any authority (ethical... |
| permit_scope | Description of the original scope and permissions of the research on the gene... |
| ploidy | The ploidy level of the genome (e |
| prev_pubs | Any previous publications that report non-nucleic acid data from the same sam... |
| propagation | The type of reproduction from the parent stock |
| ref_biomaterial | Primary publication if isolated before genome publication; otherwise, primary... |
| rel_to_oxygen | Is this organism an aerobe, anaerobe? Please note that aerobic and anaerobic ... |
| samp_alt_lab_ids | An alternative sample or material ID related to the sample not already covere... |
| samp_category | The type/category of a sample |
| samp_collect_device | The device used to collect an environmental sample |
| samp_collect_method | The method employed for collecting the sample |
| samp_decont_pretreat | Protocols employed for sample surface decontamination of external modern nuc... |
| samp_mat_process | A brief description of any processing applied to the sample during or after r... |
| samp_preserv_treatm | Description of any treatment applied directly to samples for the specific pur... |
| samp_size | The total amount or size (volume (ml), mass (g) or area (m2) ) of sample coll... |
| samp_vol_we_dna_ext | Volume (ml) or mass (g) of total collected sample processed for DNA extractio... |
| size_frac | Filtering pore size used in sample preparation |
| sop_experimental | Provide a DOI or URL to refer to the paper where the field report, nucleic ac... |
| source_mat_id | A unique identifier assigned to a material sample (as defined by http://rs |
| source_uvig | Type of dataset from which the UViG was obtained |
| specific_host | Report the host's taxonomic name and/or NCBI taxonomy ID |
| subspecf_gen_lin | Information about the genetic distinctness of the sequenced organism below th... |
| trophic_level | Trophic levels are the feeding position in a food chain |
| virus_enrich_appr | List of approaches used to enrich the sample for viruses, if any |