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Term: source material identifiers (source_mat_id)

A unique identifier assigned to a material sample (as defined by http://rs.tdwg.org/dwc/terms/materialSampleID, and as opposed to a particular digital record of a material sample) used for extracting nucleic acids, and subsequent sequencing. The identifier can refer either to the original material collected or to any derived sub-samples. The INSDC qualifiers /specimen_voucher, /bio_material, or /culture_collection may or may not share the same value as the source_mat_id field. For instance, the /specimen_voucher qualifier and source_mat_id may both contain 'UAM:Herps:14' , referring to both the specimen voucher and sampled tissue with the same identifier. However, the /culture_collection qualifier may refer to a value from an initial culture (e.g. ATCC:11775) while source_mat_id would refer to an identifier from some derived culture from which the nucleic acids were extracted (e.g. xatc123 or ark:/2154/R2)

URI: MIXS:0000026

Applicable Checklists and Extensions

NOTE: does not include Combinations (of checklists and extensions) that use source_mat_id.

Name Description Checklist/Extension
MigsOrg Minimal Information about a Genome Sequence: organelle Checklist
MigsPl Minimal Information about a Genome Sequence: plasmid Checklist
Mims Metagenome or Environmental Checklist
Miuvig Minimum Information About an Uncultivated Virus Genome Checklist
Misag Minimum Information About a Single Amplified Genome Checklist
MigsVi Minimal Information about a Genome Sequence: virus Checklist
Agriculture A collection of terms appropriate when sequencing samples obtained in an agri... Extension
SymbiontAssociated A collection of terms appropriate when collecting samples and sequencing samp... Extension
Mimag Minimum Information About a Metagenome-Assembled Genome Checklist
MimarksC Minimal Information about a Marker Specimen: specimen Checklist
MigsBa Minimal Information about a Genome Sequence: cultured bacteria/archaea Checklist
MigsEu Minimal Information about a Genome Sequence: eukaryote Checklist
MimarksS Minimal Information about a Marker Specimen: survey Checklist

Properties

  • Range: String
  • Cardinality: *

Examples

Value
MPI012345

Annotations

  • Expected_value: for cultures of microorganisms: identifiers for two culture collections; for other material a unique arbitrary identifer

LinkML Source

name: source_mat_id
annotations:
  Expected_value:
    tag: Expected_value
    value: 'for cultures of microorganisms: identifiers for two culture collections;
      for other material a unique arbitrary identifer'
description: A unique identifier assigned to a material sample (as defined by http://rs.tdwg.org/dwc/terms/materialSampleID,
  and as opposed to a particular digital record of a material sample) used for extracting
  nucleic acids, and subsequent sequencing. The identifier can refer either to the
  original material collected or to any derived sub-samples. The INSDC qualifiers
  /specimen_voucher, /bio_material, or /culture_collection may or may not share the
  same value as the source_mat_id field. For instance, the /specimen_voucher qualifier
  and source_mat_id may both contain 'UAM:Herps:14' , referring to both the specimen
  voucher and sampled tissue with the same identifier. However, the /culture_collection
  qualifier may refer to a value from an initial culture (e.g. ATCC:11775) while source_mat_id
  would refer to an identifier from some derived culture from which the nucleic acids
  were extracted (e.g. xatc123 or ark:/2154/R2)
title: source material identifiers
examples:
- value: MPI012345
in_subset:
- nucleic acid sequence source
from_schema: https://w3id.org/mixs
keywords:
- identifier
- material
- source
string_serialization: '{text}'
slot_uri: MIXS:0000026
multivalued: true
alias: source_mat_id
domain_of:
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- Agriculture
- SymbiontAssociated
range: string