Term: batch identifiers (batch_ids)
Identifiers for any form of batch or 'group' that the samples is associated with, examples including: individual/skeleton ID, sediment core IDs, extract batch, library batch, sequencing run etc.. These IDs should always act as 'umbrella' IDs that allow association with entries processed together, to allow for downstream analyses of batch effects. Ideally, the information should indicate or specify what type of batch the ID is describing.
URI: MIXS:0001382
Applicable Checklists and Extensions
NOTE: does not include Combinations (of checklists and extensions) that use batch_ids.
| Name | Description | Checklist/Extension |
|---|---|---|
| Ancient | A collection of terms appropriate when collecting samples and sequencing samp... | Extension |
| MimsHostAssociatedAncient | MIxS Data that comply with the Mims checklist, and HostAssociated and Ancient... | - |
| MimsHumanAssociatedAncient | MIxS Data that comply with the Mims checklist, and HumanAssociated and Ancien... | - |
| MimsHumanOralAncient | MIxS Data that comply with the Mims checklist, and HumanOral and Ancient exte... | - |
| MimsHumanGutAncient | MIxS Data that comply with the Mims checklist, and HumanGut and Ancient exten... | - |
| MimsHumanSkinAncient | MIxS Data that comply with the Mims checklist, and HumanSkin and Ancient exte... | - |
| MimsSedimentAncient | MIxS Data that comply with the Mims checklist, and Sediment and Ancient exten... | - |
| MimsSoilAncient | MIxS Data that comply with the Mims checklist, and Soil and Ancient extension... | - |
| MimsPlantAssociatedAncient | MIxS Data that comply with the Mims checklist, and PlantAssociated and Ancien... | - |
Properties
- Range: String
- Cardinality: *
Examples
| Value |
|---|
| EXTB1;LIBB2;SeqRun1 |
| Extraction batch: 1 |
| 20260501-A2 (extraction);20202607-B2 (library) |
| ExtrMG;LibMG;SeqMG |
Annotations
- Expected_value: list any batch_ids the sample, nucleic acids, or library was associated with during processing and sequencing
LinkML Source
name: batch_ids
annotations:
Expected_value:
tag: Expected_value
value: list any batch_ids the sample, nucleic acids, or library was associated
with during processing and sequencing
description: 'Identifiers for any form of batch or ''group'' that the samples is associated
with, examples including: individual/skeleton ID, sediment core IDs, extract batch,
library batch, sequencing run etc.. These IDs should always act as ''umbrella''
IDs that allow association with entries processed together, to allow for downstream
analyses of batch effects. Ideally, the information should indicate or specify what
type of batch the ID is describing.'
title: batch identifiers
examples:
- value: EXTB1;LIBB2;SeqRun1
- value: 'Extraction batch: 1'
- value: 20260501-A2 (extraction);20202607-B2 (library)
- value: ExtrMG;LibMG;SeqMG
in_subset:
- nucleic acid sequence source
from_schema: https://w3id.org/mixs
keywords:
- identifiers
slot_uri: MIXS:0001382
domain_of:
- Ancient
- MimsHostAssociatedAncient
- MimsHumanAssociatedAncient
- MimsHumanOralAncient
- MimsHumanGutAncient
- MimsHumanSkinAncient
- MimsSedimentAncient
- MimsSoilAncient
- MimsPlantAssociatedAncient
range: string
required: false
recommended: false
multivalued: true