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Term: reference for biomaterial (ref_biomaterial)

Primary publication if isolated before genome publication; otherwise, primary genome report

URI: MIXS:0000025

Applicable Checklists and Extensions

NOTE: does not include Combinations (of checklists and extensions) that use ref_biomaterial.

Name Description Checklist/Extension
MimsMisip Metagenome or Environmental with SIP Checklist
MigsBa Minimal Information about a Genome Sequence: cultured bacteria/archaea Checklist
MigsEu Minimal Information about a Genome Sequence: eukaryote Checklist
MigsOrg Minimal Information about a Genome Sequence: organelle Checklist
MigsPl Minimal Information about a Genome Sequence: plasmid Checklist
MigsVi Minimal Information about a Genome Sequence: virus Checklist
Mimag Minimum Information About a Metagenome-Assembled Genome Checklist
Mims Metagenome or Environmental Checklist
Misag Minimum Information About a Single Amplified Genome Checklist
Miuvig Minimum Information About an Uncultivated Virus Genome Checklist
MimsHostAssociatedAncient MIxS Data that comply with the Mims checklist, and HostAssociated and Ancient... -
MimsHumanAssociatedAncient MIxS Data that comply with the Mims checklist, and HumanAssociated and Ancien... -
MimsHumanOralAncient MIxS Data that comply with the Mims checklist, and HumanOral and Ancient exte... -
MimsHumanGutAncient MIxS Data that comply with the Mims checklist, and HumanGut and Ancient exten... -
MimsHumanSkinAncient MIxS Data that comply with the Mims checklist, and HumanSkin and Ancient exte... -
MimsSedimentAncient MIxS Data that comply with the Mims checklist, and Sediment and Ancient exten... -
MimsSoilAncient MIxS Data that comply with the Mims checklist, and Soil and Ancient extension... -
MimsPlantAssociatedAncient MIxS Data that comply with the Mims checklist, and PlantAssociated and Ancien... -

Properties

  • Range: String

  • Cardinality: 0..1

  • Structured pattern: ^({PMID}|{DOI}|{URL})$

Examples

Value
doi:10.1016/j.syapm.2018.01.009

LinkML Source

name: ref_biomaterial
description: Primary publication if isolated before genome publication; otherwise,
  primary genome report
title: reference for biomaterial
examples:
- value: doi:10.1016/j.syapm.2018.01.009
in_subset:
- nucleic acid sequence source
from_schema: https://w3id.org/mixs
slot_uri: MIXS:0000025
domain_of:
- MimsMisip
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- Mims
- Misag
- Miuvig
- MimsHostAssociatedAncient
- MimsHumanAssociatedAncient
- MimsHumanOralAncient
- MimsHumanGutAncient
- MimsHumanSkinAncient
- MimsSedimentAncient
- MimsSoilAncient
- MimsPlantAssociatedAncient
range: string
structured_pattern:
  syntax: ^({PMID}|{DOI}|{URL})$
  interpolated: true
  partial_match: true