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Term: sample decontamination pretreatment (samp_decont_pretreat)

Protocols employed for sample surface decontamination of external modern nucleic acids; Treatment used on the samples immediately prior to nucleic acid extraction. Dependant on the sample type. More relevant for bones than environmental samples. E.g. buffers, EDTA, etc.

URI: MIXS:0001384

Applicable Checklists and Extensions

NOTE: does not include Combinations (of checklists and extensions) that use samp_decont_pretreat.

Name Description Checklist/Extension
Ancient A collection of terms appropriate when collecting samples and sequencing samp... Extension
MimsHostAssociatedAncient MIxS Data that comply with the Mims checklist, and HostAssociated and Ancient... -
MimsHumanAssociatedAncient MIxS Data that comply with the Mims checklist, and HumanAssociated and Ancien... -
MimsHumanOralAncient MIxS Data that comply with the Mims checklist, and HumanOral and Ancient exte... -
MimsHumanGutAncient MIxS Data that comply with the Mims checklist, and HumanGut and Ancient exten... -
MimsHumanSkinAncient MIxS Data that comply with the Mims checklist, and HumanSkin and Ancient exte... -
MimsSedimentAncient MIxS Data that comply with the Mims checklist, and Sediment and Ancient exten... -
MimsSoilAncient MIxS Data that comply with the Mims checklist, and Soil and Ancient extension... -
MimsPlantAssociatedAncient MIxS Data that comply with the Mims checklist, and PlantAssociated and Ancien... -

Properties

  • Range: String

  • Cardinality: *

  • Structured pattern: ^{PMID}|{DOI}|{URL}$

  • Regex pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$

Examples

Value
doi:10.1016/j.jas.2015.02.0181

LinkML Source

name: samp_decont_pretreat
description: Protocols employed for sample surface decontamination of external  modern
  nucleic acids; Treatment used on the samples immediately prior to nucleic acid extraction.
  Dependant on the sample type.  More relevant for bones than environmental samples.
  E.g. buffers, EDTA, etc.
title: sample decontamination pretreatment
examples:
- value: doi:10.1016/j.jas.2015.02.0181
in_subset:
- nucleic acid sequence source
from_schema: https://w3id.org/mixs
slot_uri: MIXS:0001384
domain_of:
- Ancient
- MimsHostAssociatedAncient
- MimsHumanAssociatedAncient
- MimsHumanOralAncient
- MimsHumanGutAncient
- MimsHumanSkinAncient
- MimsSedimentAncient
- MimsSoilAncient
- MimsPlantAssociatedAncient
range: string
multivalued: true
pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$
structured_pattern:
  syntax: ^{PMID}|{DOI}|{URL}$
  interpolated: true
  partial_match: true