Term: subspecific genetic lineage (subspecf_gen_lin)
Information about the genetic distinctness of the sequenced organism below the subspecies level, e.g., serovar, serotype, biotype, ecotype, or any relevant genetic typing schemes like Group I plasmid. Subspecies should not be recorded in this term, but in the NCBI taxonomy. Supply both the lineage name and the lineage rank separated by a colon, e.g., biovar:abc123
URI: MIXS:0000020
Applicable Checklists and Extensions
NOTE: does not include Combinations (of checklists and extensions) that use subspecf_gen_lin.
Name | Description | Checklist/Extension |
---|---|---|
MigsVi | Minimal Information about a Genome Sequence: virus | Checklist |
MigsOrg | Minimal Information about a Genome Sequence: organelle | Checklist |
MigsPl | Minimal Information about a Genome Sequence: plasmid | Checklist |
MigsEu | Minimal Information about a Genome Sequence: eukaryote | Checklist |
MigsBa | Minimal Information about a Genome Sequence: cultured bacteria/archaea | Checklist |
FoodFoodProductionFacility | A collection of terms appropriate when collecting samples and performing sequ... | Extension |
MimarksC | Minimal Information about a Marker Sequence: specimen | Checklist |
Properties
- Range: String
- Cardinality: 0..1
Examples
Value |
---|
serovar:Newport |
Annotations
- Expected_value: Genetic lineage below lowest rank of NCBI taxonomy, which is subspecies, e.g. serovar, biotype, ecotype, variety, cultivar
LinkML Source
name: subspecf_gen_lin
annotations:
Expected_value:
tag: Expected_value
value: Genetic lineage below lowest rank of NCBI taxonomy, which is subspecies,
e.g. serovar, biotype, ecotype, variety, cultivar
description: Information about the genetic distinctness of the sequenced organism
below the subspecies level, e.g., serovar, serotype, biotype, ecotype, or any relevant
genetic typing schemes like Group I plasmid. Subspecies should not be recorded in
this term, but in the NCBI taxonomy. Supply both the lineage name and the lineage
rank separated by a colon, e.g., biovar:abc123
title: subspecific genetic lineage
examples:
- value: serovar:Newport
in_subset:
- nucleic acid sequence source
from_schema: https://w3id.org/mixs
keywords:
- lineage
string_serialization: '{rank name}:{text}'
slot_uri: MIXS:0000020
alias: subspecf_gen_lin
domain_of:
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- MimarksC
- FoodFoodProductionFacility
range: string