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Term: experimental standard operating procedure (sop_experimental)

Provide a DOI or URL to refer to the paper where the field report, nucleic acid extraction, library construction, and other procedures are explained in more detail, e.g. the paper reporting the data.

URI: MIXS:0001387

Applicable Checklists and Extensions

NOTE: does not include Combinations (of checklists and extensions) that use sop_experimental.

Name Description Checklist/Extension
Ancient A collection of terms appropriate when collecting samples and sequencing samp... Extension
MimsHostAssociatedAncient MIxS Data that comply with the Mims checklist, and HostAssociated and Ancient... -
MimsHumanAssociatedAncient MIxS Data that comply with the Mims checklist, and HumanAssociated and Ancien... -
MimsHumanOralAncient MIxS Data that comply with the Mims checklist, and HumanOral and Ancient exte... -
MimsHumanGutAncient MIxS Data that comply with the Mims checklist, and HumanGut and Ancient exten... -
MimsHumanSkinAncient MIxS Data that comply with the Mims checklist, and HumanSkin and Ancient exte... -
MimsSedimentAncient MIxS Data that comply with the Mims checklist, and Sediment and Ancient exten... -
MimsSoilAncient MIxS Data that comply with the Mims checklist, and Soil and Ancient extension... -
MimsPlantAssociatedAncient MIxS Data that comply with the Mims checklist, and PlantAssociated and Ancien... -

Properties

  • Range: String

  • Cardinality: *

  • Structured pattern: ^{PMID}|{DOI}|{URL}$

  • Regex pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$

Examples

Value
doi:10.1093/nar/gkr771

LinkML Source

name: sop_experimental
description: Provide a DOI or URL to refer to the paper where the field report, nucleic
  acid extraction,  library construction, and other procedures are explained in more
  detail, e.g. the paper reporting the data.
title: experimental standard operating procedure
examples:
- value: doi:10.1093/nar/gkr771
in_subset:
- nucleic acid sequence source
from_schema: https://w3id.org/mixs
slot_uri: MIXS:0001387
domain_of:
- Ancient
- MimsHostAssociatedAncient
- MimsHumanAssociatedAncient
- MimsHumanOralAncient
- MimsHumanGutAncient
- MimsHumanSkinAncient
- MimsSedimentAncient
- MimsSoilAncient
- MimsPlantAssociatedAncient
range: string
required: false
recommended: false
multivalued: true
pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$
structured_pattern:
  syntax: ^{PMID}|{DOI}|{URL}$
  interpolated: true
  partial_match: true