Term: ploidy (ploidy)

The ploidy level of the genome (e.g. allopolyploid, haploid, diploid, triploid, tetraploid). It has implications for the downstream study of duplicated gene and regions of the genomes (and perhaps for difficulties in assembly). For terms, please select terms listed under class ploidy (PATO:001374) of Phenotypic Quality Ontology (PATO), and for a browser of PATO (v 2018-03-27) please refer to http://purl.bioontology.org/ontology/PATO

URI: MIXS:0000021

Applicable Checklists and Extensions

NOTE: does not include Combinations (of checklists and extensions) that use ploidy.

Name	Description	Checklist/Extension
MigsEu	Minimal Information about a Genome Sequence: eukaryote	Checklist

Properties

• Range: String

• Cardinality: 0..1

• Structured pattern: ^{termLabel} \[{termID}\]$

• Regex pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$

Examples

Value
allopolyploidy [PATO:0001379]

LinkML Source

name: ploidy
description: The ploidy level of the genome (e.g. allopolyploid, haploid, diploid,
  triploid, tetraploid). It has implications for the downstream study of duplicated
  gene and regions of the genomes (and perhaps for difficulties in assembly). For
  terms, please select terms listed under class ploidy (PATO:001374) of Phenotypic
  Quality Ontology (PATO), and for a browser of PATO (v 2018-03-27) please refer to
  http://purl.bioontology.org/ontology/PATO
title: ploidy
examples:
- value: allopolyploidy [PATO:0001379]
in_subset:
- nucleic acid sequence source
from_schema: https://w3id.org/mixs
slot_uri: MIXS:0000021
alias: ploidy
domain_of:
- MigsEu
range: string
pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$
structured_pattern:
  syntax: ^{termLabel} \[{termID}\]$
  interpolated: true
  partial_match: true