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Term: sample collection method (samp_collect_method)

The method employed for collecting the sample

URI: MIXS:0001225

Applicable Checklists and Extensions

NOTE: does not include Combinations (of checklists and extensions) that use samp_collect_method.

Name Description Checklist/Extension
MigsBa Minimal Information about a Genome Sequence: cultured bacteria/archaea Checklist
Misag Minimum Information About a Single Amplified Genome Checklist
Mimag Minimum Information About a Metagenome-Assembled Genome Checklist
MigsVi Minimal Information about a Genome Sequence: virus Checklist
Miuvig Minimum Information About an Uncultivated Virus Genome Checklist
Agriculture A collection of terms appropriate when sequencing samples obtained in an agri... Extension
FoodAnimalAndAnimalFeed A collection of terms appropriate when collecting samples and performing sequ... Extension
Mims Metagenome or Environmental Checklist
FoodFoodProductionFacility A collection of terms appropriate when collecting samples and performing sequ... Extension
FoodHumanFoods A collection of terms appropriate when collecting samples and performing sequ... Extension
MigsOrg Minimal Information about a Genome Sequence: organelle Checklist
MimarksS Minimal Information about a Marker Specimen: survey Checklist
MimarksC Minimal Information about a Marker Specimen: specimen Checklist
MigsPl Minimal Information about a Genome Sequence: plasmid Checklist
MigsEu Minimal Information about a Genome Sequence: eukaryote Checklist

Properties

  • Range: String
  • Cardinality: 0..1

  • Structured pattern: ^{PMID}|{DOI}|{URL}|{text}$

  • Regex pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$|([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$

LinkML Source

name: samp_collect_method
description: The method employed for collecting the sample
title: sample collection method
in_subset:
- nucleic acid sequence source
from_schema: https://w3id.org/mixs
keywords:
- method
- sample
slot_uri: MIXS:0001225
alias: samp_collect_method
domain_of:
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$|([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
  syntax: ^{PMID}|{DOI}|{URL}|{text}$
  interpolated: true
  partial_match: true