Extension: food-food production facility (FoodFoodProductionFacility)

A collection of terms appropriate when collecting samples and performing sequencing of samples obtained from food production facilities.

Terms

MIXS ID	Name	Cardinality and Range	Description
MIXS:0001107	samp_name	1..1 String	A local identifier or name that for the material sample used for extracting n...
MIXS:0000092	project_name	1..1 String	Name of the project within which the sequencing was organized
MIXS:0000009	lat_lon	1..1 String	The geographical origin of the sample as defined by latitude and longitude
MIXS:0000010	geo_loc_name	1..1 String	The geographical origin of the sample as defined by the country or sea name f...
MIXS:0000011	collection_date	1..1 Datetime	The time of sampling, either as an instance (single point in time) or interva...
MIXS:0000050	seq_meth	1..1 String	Sequencing machine used
MIXS:0000001	samp_size	0..1 String	The total amount or size (volume (ml), mass (g) or area (m2) ) of sample coll...
MIXS:0000002	samp_collect_device	0..1 String	The device used to collect an environmental sample
MIXS:0000008	experimental_factor	0..* String	Variable aspects of an experiment design that can be used to describe an expe...
MIXS:0000037	nucl_acid_ext	0..1 String	A link to a literature reference, electronic resource or a standard operating...
MIXS:0000103	organism_count	0..* String	Total cell count of any organism (or group of organisms) per gram, volume or ...
MIXS:0000110	samp_store_temp	0..1 String	Temperature at which sample was stored, e
MIXS:0000116	samp_store_dur	0..1 String	Duration for which the sample was stored
MIXS:0000124	air_temp	0..1 String	Temperature of the air at the time of sampling
MIXS:0000192	room_dim	0..1 String	The length, width and height of sampling room
MIXS:0000226	freq_clean	0..1 FreqCleanEnum	The number of times the sample location is cleaned
MIXS:0000244	samp_room_id	0..1 Integer	Sampling room number
MIXS:0000111	samp_vol_we_dna_ext	0..1 String	Volume (ml) or mass (g) of total collected sample processed for DNA extractio...
MIXS:0000325	pool_dna_extracts	0..1 String	Indicate whether multiple DNA extractions were mixed
MIXS:0000755	samp_store_loc	0..1 String	Location at which sample was stored, usually name of a specific freezer/room
MIXS:0000758	surf_material	0..1 SurfMaterialEnum	Surface materials at the point of sampling
MIXS:0000764	indoor_surf	0..1 IndoorSurfEnum	Type of indoor surface
MIXS:0000775	avg_occup	0..1 Float	Daily average occupancy of room
MIXS:0000828	samp_floor	0..1 String	The floor of the building, where the sampling room is located
MIXS:0000859	genetic_mod	0..1 String	Genetic modifications of the genome of an organism, which may occur naturally...
MIXS:0001183	coll_site_geo_feat	1..1 String	Text or terms that describe the geographic feature where the food sample was ...
MIXS:0001154	samp_source_mat_cat	1..1 String	This is the scientific role or category that the subject organism or material...
MIXS:0000998	samp_type	1..1 String	The type of material from which the sample was obtained
MIXS:0001229	samp_stor_media	1..1 String	The liquid that is added to the sample collection device prior to sampling
MIXS:0001228	samp_stor_device	1..1 String	The container used to store the sample
MIXS:0001184	food_product_type	1..1 String	A food product type is a class of food products that is differentiated by its...
MIXS:0001179	IFSAC_category	1..* String	The IFSAC food categorization scheme has five distinct levels to which foods ...
MIXS:0001213	food_product_qual	1..1 String	Descriptors for describing food visually or via other senses, which is useful...
MIXS:0001131	food_contact_surf	1..* String	The specific container or coating materials in direct contact with the food
MIXS:0001252	facility_type	0..* FacilityTypeEnum	Establishment details about the type of facility where the sample was taken
MIXS:0001137	food_trav_mode	0..* String	A descriptor for the method of movement of food commodity along the food dist...
MIXS:0001138	food_trav_vehic	0..* String	A descriptor for the mobile machine which is used to transport food commoditi...
MIXS:0001231	samp_transport_dur	0..1 String	The duration of time from when the sample was collected until processed
MIXS:0001232	samp_transport_temp	0..1 String	Temperature at which sample was transported, e
MIXS:0001225	samp_collect_method	0..1 String	The method employed for collecting the sample
MIXS:0001224	num_samp_collect	0..1 String	The number of samples collected during the current sampling event
MIXS:0001147	lot_number	0..* String	A distinctive alpha-numeric identification code assigned by the manufacturer ...
MIXS:0001253	hygienic_area	0..1 String	The subdivision of areas within a food production facility according to hygie...
MIXS:0001254	env_monitoring_zone	0..1 String	An environmental monitoring zone is a formal designation as part of an enviro...
MIXS:0001255	area_samp_size	0..1 String	The total amount or size (volume (ml), mass (g) or area (m2) ) of sample coll...
MIXS:0001256	samp_surf_moisture	0..* SampSurfMoistureEnum	Degree of water held on a sampled surface
MIXS:0001257	samp_loc_condition	0..1 SampLocConditionEnum	The condition of the sample location at the time of sampling
MIXS:0001258	biocide_used	0..* String	Substance intended for preventing, neutralizing, destroying, repelling, or mi...
MIXS:0001259	ster_meth_samp_room	0..* String	The method used to sterilize the sampling room
MIXS:0001177	enrichment_protocol	0..1 String	The microbiological workflow or protocol followed to test for the presence or...
MIXS:0001119	cult_target	0..* String	The target microbial analyte in terms of investigation scope
MIXS:0001216	microb_cult_med	0..1 String	A culture medium used to select for, grow, and maintain prokaryotic microorga...
MIXS:0001173	timepoint	0..1 String	Time point at which a sample or observation is made or taken from a biomateri...
MIXS:0001194	bacterial_density	0..1 String	Number of bacteria in sample, as defined by bacteria density (http://purl
MIXS:0001181	cult_isol_date	0..1 Datetime	The datetime marking the end of a process in which a sample yields a positive...
MIXS:0001117	cult_result	0..1 CultResultEnum	Any result of a bacterial culture experiment reported as a binary assessment ...
MIXS:0001118	cult_result_org	0..* String	Taxonomic information about the cultured organism(s)
MIXS:0000020	subspecf_gen_lin	0..1 String	Information about the genetic distinctness of the sequenced organism below th...
MIXS:0001153	samp_pooling	0..* String	Physical combination of several instances of like material, e
MIXS:0001151	samp_purpose	0..1 String	The reason that the sample was collected
MIXS:0001227	samp_rep_tech	0..1 String	Repeated measurements of the same sample that show independent measures of th...
MIXS:0001226	samp_rep_biol	0..1 String	Measurements of biologically distinct samples that show biological variation
MIXS:0001230	samp_transport_cont	0..1 SampTransportContEnum	Conatiner in which the sample was stored during transport
MIXS:0001236	study_design	0..* String	A plan specification comprised of protocols (which may specify how and what k...
MIXS:0001223	nucl_acid_ext_kit	0..* String	The name of the extraction kit used to recover the nucleic acid fraction of a...
MIXS:0001145	library_prep_kit	0..1 String	Packaged kits (containing adapters, indexes, enzymes, buffers etc
MIXS:0001155	sequencing_kit	0..1 String	Pre-filled, ready-to-use reagent cartridges
MIXS:0001156	sequencing_location	0..1 String	The location the sequencing run was performed
MIXS:0001238	study_inc_temp	0..1 String	Sample incubation temperature if unpublished or unvalidated method is used
MIXS:0001237	study_inc_dur	0..1 String	Sample incubation duration if unpublished or unvalidated method is used
MIXS:0001239	study_timecourse	0..1 String	For time-course research studies involving samples of the food commodity, ind...
MIXS:0001240	study_tmnt	0..* String	A process in which the act is intended to modify or alter some other material...
MIXS:0001139	food_source	0..1 String	Type of plant or animal from which the food product or its major ingredient i...
MIXS:0001203	food_dis_point	0..* String	A reference to a place on the Earth, by its name or by its geographical locat...
MIXS:0001204	food_dis_point_city	0..* String	A reference to a place on the Earth, by its name or by its geographical locat...
MIXS:0001207	food_origin	0..1 String	A reference to a place on the Earth, by its name or by its geographical locat...
MIXS:0001212	food_prod_synonym	0..* String	Other names by which the food product is known by (e
MIXS:0001200	food_additive	0..* String	A substance or substances added to food to maintain or improve safety and fre...
MIXS:0001214	food_trace_list	0..1 FoodTraceListEnum	The FDA is proposing to establish additional traceability recordkeeping requi...
MIXS:0001149	part_plant_animal	0..* String	The anatomical part of the organism being involved in food production or cons...
MIXS:0001205	food_ingredient	0..* String	In this field, please list individual ingredients for multi-component food [F...
MIXS:0001234	spec_intended_cons	0..* String	Food consumer type, human or animal, for which the food product is produced a...
MIXS:0001215	HACCP_term	0..* String	Hazard Analysis Critical Control Points (HACCP) food safety terms; This field...
MIXS:0001199	dietary_claim_use	0..* String	These descriptors are used either for foods intended for special dietary use ...
MIXS:0001201	food_allergen_label	0..* String	A label indication that the product contains a recognized allergen
MIXS:0001136	food_prod_char	0..* String	Descriptors of the food production system such as wild caught, free-range, or...
MIXS:prod_label_claims	prod_label_claims	0..* String	Labeling claims containing descriptors such as wild caught, free-range, organ...
MIXS:0001206	food_name_status	0..1 String	A datum indicating that use of a food product name is regulated in some legal...
MIXS:0001135	food_preserv_proc	0..* String	The methods contributing to the prevention or retardation of microbial, enzym...
MIXS:0001202	food_cooking_proc	0..* String	The transformation of raw food by the application of heat
MIXS:0001140	food_treat_proc	0..* String	Used to specifically characterize a food product based on the treatment or pr...
MIXS:0001132	food_contain_wrap	0..1 String	Type of container or wrapping defined by the main container material, the con...
MIXS:0001208	food_pack_capacity	0..1 String	The maximum number of product units within a package
MIXS:0001134	food_pack_medium	0..* String	The medium in which the food is packed for preservation and handling or the m...
MIXS:0001210	food_prior_contact	0..* String	The material the food contacted (e
MIXS:0001211	food_prod	0..* String	Descriptors of the food production system or of the agricultural environment ...
MIXS:0001178	food_quality_date	0..1 String	The date recommended for the use of the product while at peak quality, this d...
MIXS:0001152	repository_name	0..* String	The name of the institution where the sample or DNA extract is held or "sampl...
MIXS:0001144	intended_consumer	0..* String	Food consumer type, human or animal, for which the food product is produced a...
MIXS:0001209	food_pack_integrity	0..* String	A term label and term id to describe the state of the packing material and te...
MIXS:0000752	misc_param	0..* String	Any other measurement performed or parameter collected, that is not listed he...

Aliases

• MIxS-Food(food production facility)

Annotations

• use_cases: Microbiome of food production facilities/factories

LinkML Source

Direct

name: FoodFoodProductionFacility
annotations:
  use_cases:
    tag: use_cases
    value: Microbiome of food production facilities/factories
description: A collection of terms appropriate when collecting samples and performing
  sequencing of samples  obtained from food production facilities.
title: food-food production facility
comments:
- This extension is intended to work alongside the other food extensions (animals
  and animal feed, farm environment, and human foods) for capturing contextual data
  across the food supply-chain environment.
from_schema: https://w3id.org/mixs
aliases:
- MIxS-Food(food production facility)
is_a: Extension
slots:
- samp_name
- project_name
- lat_lon
- geo_loc_name
- collection_date
- seq_meth
- samp_size
- samp_collect_device
- experimental_factor
- nucl_acid_ext
- organism_count
- samp_store_temp
- samp_store_dur
- air_temp
- room_dim
- freq_clean
- samp_room_id
- samp_vol_we_dna_ext
- pool_dna_extracts
- samp_store_loc
- surf_material
- indoor_surf
- avg_occup
- samp_floor
- genetic_mod
- coll_site_geo_feat
- samp_source_mat_cat
- samp_type
- samp_stor_media
- samp_stor_device
- food_product_type
- IFSAC_category
- food_product_qual
- food_contact_surf
- facility_type
- food_trav_mode
- food_trav_vehic
- samp_transport_dur
- samp_transport_temp
- samp_collect_method
- num_samp_collect
- lot_number
- hygienic_area
- env_monitoring_zone
- area_samp_size
- samp_surf_moisture
- samp_loc_condition
- biocide_used
- ster_meth_samp_room
- enrichment_protocol
- cult_target
- microb_cult_med
- timepoint
- bacterial_density
- cult_isol_date
- cult_result
- cult_result_org
- subspecf_gen_lin
- samp_pooling
- samp_purpose
- samp_rep_tech
- samp_rep_biol
- samp_transport_cont
- study_design
- nucl_acid_ext_kit
- library_prep_kit
- sequencing_kit
- sequencing_location
- study_inc_temp
- study_inc_dur
- study_timecourse
- study_tmnt
- food_source
- food_dis_point
- food_dis_point_city
- food_origin
- food_prod_synonym
- food_additive
- food_trace_list
- part_plant_animal
- food_ingredient
- spec_intended_cons
- HACCP_term
- dietary_claim_use
- food_allergen_label
- food_prod_char
- prod_label_claims
- food_name_status
- food_preserv_proc
- food_cooking_proc
- food_treat_proc
- food_contain_wrap
- food_pack_capacity
- food_pack_medium
- food_prior_contact
- food_prod
- food_quality_date
- repository_name
- intended_consumer
- food_pack_integrity
- misc_param
slot_usage:
  air_temp:
    name: air_temp
    examples:
    - value: 4 degree Celsius
    domain_of:
    - BuiltEnvironment
    - FoodFoodProductionFacility
  avg_occup:
    name: avg_occup
    examples:
    - value: '6'
    domain_of:
    - BuiltEnvironment
    - FoodFoodProductionFacility
  food_contact_surf:
    name: food_contact_surf
    domain_of:
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    required: true
  food_pack_medium:
    name: food_pack_medium
    examples:
    - value: vacuum-packed [FOODON:03480027]
    domain_of:
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
  food_product_qual:
    name: food_product_qual
    domain_of:
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    - FoodHumanFoods
    required: true
  food_product_type:
    name: food_product_type
    examples:
    - value: shrimp (peeled, deep-frozen) [FOODON:03317171]
    domain_of:
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    required: true
  food_source:
    name: food_source
    examples:
    - value: giant tiger prawn [FOODON:03412612]
    domain_of:
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
  freq_clean:
    name: freq_clean
    string_serialization: '{text}'
    domain_of:
    - BuiltEnvironment
    - FoodFoodProductionFacility
  library_prep_kit:
    name: library_prep_kit
    examples:
    - value: Illumina DNA Prep
    domain_of:
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
  organism_count:
    name: organism_count
    examples:
    - value: total prokaryotes;3.5e7 colony forming units per milliliter;qPCR
    domain_of:
    - Agriculture
    - Air
    - BuiltEnvironment
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
  pool_dna_extracts:
    name: pool_dna_extracts
    string_serialization: '{boolean},{integer}'
    domain_of:
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - Soil
  samp_collect_device:
    name: samp_collect_device
    examples:
    - value: biopsy, niskin bottle, push core
    domain_of:
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
  samp_collect_method:
    name: samp_collect_method
    examples:
    - value: environmental swab sampling
    domain_of:
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    - FoodHumanFoods
  samp_source_mat_cat:
    name: samp_source_mat_cat
    domain_of:
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    required: true
  samp_stor_device:
    name: samp_stor_device
    domain_of:
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    - FoodHumanFoods
    required: true
  samp_stor_media:
    name: samp_stor_media
    domain_of:
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    - FoodHumanFoods
    required: true
class_uri: MIXS:0016021

Induced

name: FoodFoodProductionFacility
annotations:
  use_cases:
    tag: use_cases
    value: Microbiome of food production facilities/factories
description: A collection of terms appropriate when collecting samples and performing
  sequencing of samples  obtained from food production facilities.
title: food-food production facility
comments:
- This extension is intended to work alongside the other food extensions (animals
  and animal feed, farm environment, and human foods) for capturing contextual data
  across the food supply-chain environment.
from_schema: https://w3id.org/mixs
aliases:
- MIxS-Food(food production facility)
is_a: Extension
slot_usage:
  air_temp:
    name: air_temp
    examples:
    - value: 4 degree Celsius
    domain_of:
    - BuiltEnvironment
    - FoodFoodProductionFacility
  avg_occup:
    name: avg_occup
    examples:
    - value: '6'
    domain_of:
    - BuiltEnvironment
    - FoodFoodProductionFacility
  food_contact_surf:
    name: food_contact_surf
    domain_of:
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    required: true
  food_pack_medium:
    name: food_pack_medium
    examples:
    - value: vacuum-packed [FOODON:03480027]
    domain_of:
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
  food_product_qual:
    name: food_product_qual
    domain_of:
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    - FoodHumanFoods
    required: true
  food_product_type:
    name: food_product_type
    examples:
    - value: shrimp (peeled, deep-frozen) [FOODON:03317171]
    domain_of:
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    required: true
  food_source:
    name: food_source
    examples:
    - value: giant tiger prawn [FOODON:03412612]
    domain_of:
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
  freq_clean:
    name: freq_clean
    string_serialization: '{text}'
    domain_of:
    - BuiltEnvironment
    - FoodFoodProductionFacility
  library_prep_kit:
    name: library_prep_kit
    examples:
    - value: Illumina DNA Prep
    domain_of:
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
  organism_count:
    name: organism_count
    examples:
    - value: total prokaryotes;3.5e7 colony forming units per milliliter;qPCR
    domain_of:
    - Agriculture
    - Air
    - BuiltEnvironment
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
  pool_dna_extracts:
    name: pool_dna_extracts
    string_serialization: '{boolean},{integer}'
    domain_of:
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - Soil
  samp_collect_device:
    name: samp_collect_device
    examples:
    - value: biopsy, niskin bottle, push core
    domain_of:
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
  samp_collect_method:
    name: samp_collect_method
    examples:
    - value: environmental swab sampling
    domain_of:
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    - FoodHumanFoods
  samp_source_mat_cat:
    name: samp_source_mat_cat
    domain_of:
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    required: true
  samp_stor_device:
    name: samp_stor_device
    domain_of:
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    - FoodHumanFoods
    required: true
  samp_stor_media:
    name: samp_stor_media
    domain_of:
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    - FoodHumanFoods
    required: true
attributes:
  samp_name:
    name: samp_name
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: ''
    description: A local identifier or name that for the material sample used for
      extracting nucleic acids, and subsequent sequencing. It can refer either to
      the original material collected or to any derived sub-samples. It can have any
      format, but we suggest that you make it concise, unique and consistent within
      your lab, and as informative as possible. INSDC requires every sample name from
      a single Submitter to be unique. Use of a globally unique identifier for the
      field source_mat_id is recommended in addition to sample_name
    title: sample name
    examples:
    - value: ISDsoil1
    in_subset:
    - investigation
    from_schema: https://w3id.org/mixs
    keywords:
    - sample
    slot_uri: MIXS:0001107
    alias: samp_name
    owner: FoodFoodProductionFacility
    domain_of:
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - Air
    - BuiltEnvironment
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
    required: true
  project_name:
    name: project_name
    description: Name of the project within which the sequencing was organized
    title: project name
    examples:
    - value: Forest soil metagenome
    in_subset:
    - investigation
    from_schema: https://w3id.org/mixs
    keywords:
    - project
    slot_uri: MIXS:0000092
    alias: project_name
    owner: FoodFoodProductionFacility
    domain_of:
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - Air
    - BuiltEnvironment
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
    required: true
  lat_lon:
    name: lat_lon
    annotations:
      Expected_value:
        tag: Expected_value
        value: decimal degrees,  limit to 8 decimal points
    description: The geographical origin of the sample as defined by latitude and
      longitude. The values should be reported in decimal degrees and in WGS84 system
    title: geographic location (latitude and longitude)
    examples:
    - value: 50.586825 6.408977
    in_subset:
    - environment
    from_schema: https://w3id.org/mixs
    keywords:
    - geographic
    - location
    string_serialization: '{float} {float}'
    slot_uri: MIXS:0000009
    alias: lat_lon
    owner: FoodFoodProductionFacility
    domain_of:
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - SymbiontAssociated
    range: string
    required: true
    pattern: ^(-?((?:[0-8]?[0-9](?:\.\d{0,8})?)|90)) -?[0-9]+(?:\.[0-9]{0,8})?$|^-?(1[0-7]{1,2})$
    structured_pattern:
      syntax: ^{lat} {lon}$
      interpolated: true
      partial_match: true
  geo_loc_name:
    name: geo_loc_name
    description: The geographical origin of the sample as defined by the country or
      sea name followed by specific region name. Country or sea names should be chosen
      from the INSDC country list (http://insdc.org/country.html), or the GAZ ontology
      (http://purl.bioontology.org/ontology/GAZ)
    title: geographic location (country and/or sea,region)
    examples:
    - value: 'USA: Maryland, Bethesda'
    in_subset:
    - environment
    from_schema: https://w3id.org/mixs
    keywords:
    - geographic
    - location
    slot_uri: MIXS:0000010
    alias: geo_loc_name
    owner: FoodFoodProductionFacility
    domain_of:
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - SymbiontAssociated
    range: string
    required: true
    pattern: '^([^\s-]{1,2}|[^\s-]+.+[^\s-]+): ([^\s-]{1,2}|[^\s-]+.+[^\s-]+), ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$'
    structured_pattern:
      syntax: '^{text}: {text}, {text}$'
      interpolated: true
      partial_match: true
  collection_date:
    name: collection_date
    description: 'The time of sampling, either as an instance (single point in time)
      or interval. In case no exact time is available, the date/time can be right
      truncated i.e. all of these are valid times: 2008-01-23T19:23:10+00:00; 2008-01-23T19:23:10;
      2008-01-23; 2008-01; 2008; Except: 2008-01; 2008 all are ISO8601 compliant'
    title: collection date
    examples:
    - value: '2013-03-25T12:42:31+01:00'
    in_subset:
    - environment
    from_schema: https://w3id.org/mixs
    keywords:
    - date
    slot_uri: MIXS:0000011
    alias: collection_date
    owner: FoodFoodProductionFacility
    domain_of:
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - SymbiontAssociated
    range: datetime
    required: true
  seq_meth:
    name: seq_meth
    description: Sequencing machine used. Where possible the term should be taken
      from the OBI list of DNA sequencers (http://purl.obolibrary.org/obo/OBI_0400103)
    title: sequencing method
    examples:
    - value: 454 Genome Sequencer FLX [OBI:0000702]
    in_subset:
    - sequencing
    from_schema: https://w3id.org/mixs
    keywords:
    - method
    slot_uri: MIXS:0000050
    alias: seq_meth
    owner: FoodFoodProductionFacility
    domain_of:
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
    required: true
    pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+)|(([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\])$
    structured_pattern:
      syntax: ^{text}|({termLabel} \[{termID}\])$
      interpolated: true
      partial_match: true
  samp_size:
    name: samp_size
    description: The total amount or size (volume (ml), mass (g) or area (m2) ) of
      sample collected
    title: amount or size of sample collected
    examples:
    - value: 5 liter
    in_subset:
    - nucleic acid sequence source
    from_schema: https://w3id.org/mixs
    keywords:
    - sample
    - size
    slot_uri: MIXS:0000001
    alias: samp_size
    owner: FoodFoodProductionFacility
    domain_of:
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  samp_collect_device:
    name: samp_collect_device
    description: The device used to collect an environmental sample. This field accepts
      terms listed under environmental sampling device (http://purl.obolibrary.org/obo/ENVO).
      This field also accepts terms listed under specimen collection device (http://purl.obolibrary.org/obo/GENEPIO_0002094)
    title: sample collection device
    examples:
    - value: biopsy, niskin bottle, push core
    from_schema: https://w3id.org/mixs
    string_serialization: '{termLabel} [{termID}]|{text}'
    slot_uri: MIXS:0000002
    alias: samp_collect_device
    owner: FoodFoodProductionFacility
    domain_of:
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
  experimental_factor:
    name: experimental_factor
    annotations:
      Expected_value:
        tag: Expected_value
        value: text or EFO and/or OBI
    description: Variable aspects of an experiment design that can be used to describe
      an experiment, or set of experiments, in an increasingly detailed manner. This
      field accepts ontology terms from Experimental Factor Ontology (EFO) and/or
      Ontology for Biomedical Investigations (OBI)
    title: experimental factor
    examples:
    - value: time series design [EFO:0001779]
    in_subset:
    - investigation
    from_schema: https://w3id.org/mixs
    keywords:
    - experimental
    - factor
    string_serialization: '{termLabel} [{termID}]|{text}'
    slot_uri: MIXS:0000008
    multivalued: true
    alias: experimental_factor
    owner: FoodFoodProductionFacility
    domain_of:
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
    pattern: ^\S+.*\S+ \[[a-zA-Z]{2,}:\d+\]$
  nucl_acid_ext:
    name: nucl_acid_ext
    description: A link to a literature reference, electronic resource or a standard
      operating procedure (SOP), that describes the material separation to recover
      the nucleic acid fraction from a sample
    title: nucleic acid extraction
    examples:
    - value: https://mobio.com/media/wysiwyg/pdfs/protocols/12888.pdf
    in_subset:
    - sequencing
    from_schema: https://w3id.org/mixs
    slot_uri: MIXS:0000037
    alias: nucl_acid_ext
    owner: FoodFoodProductionFacility
    domain_of:
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
    pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$
    structured_pattern:
      syntax: ^{PMID}|{DOI}|{URL}$
      interpolated: true
      partial_match: true
  organism_count:
    name: organism_count
    description: 'Total cell count of any organism (or group of organisms) per gram,
      volume or area of sample, should include name of organism followed by count.
      The method that was used for the enumeration (e.g. qPCR, atp, mpn, etc.) Should
      also be provided. (example: total prokaryotes; 3.5e7 cells per ml; qpcr)'
    title: organism count
    examples:
    - value: total prokaryotes;3.5e7 colony forming units per milliliter;qPCR
    from_schema: https://w3id.org/mixs
    string_serialization: '{text};{float} {unit};[ATP|MPN|qPCR|other]'
    slot_uri: MIXS:0000103
    multivalued: true
    alias: organism_count
    owner: FoodFoodProductionFacility
    domain_of:
    - Agriculture
    - Air
    - BuiltEnvironment
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
  samp_store_temp:
    name: samp_store_temp
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: degree Celsius
    description: Temperature at which sample was stored, e.g. -80 degree Celsius
    title: sample storage temperature
    examples:
    - value: -80 degree Celsius
    from_schema: https://w3id.org/mixs
    keywords:
    - sample
    - storage
    - temperature
    slot_uri: MIXS:0000110
    alias: samp_store_temp
    owner: FoodFoodProductionFacility
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  samp_store_dur:
    name: samp_store_dur
    description: Duration for which the sample was stored. Indicate the duration for
      which the sample was stored written in ISO 8601 format
    title: sample storage duration
    examples:
    - value: P1Y6M
    from_schema: https://w3id.org/mixs
    keywords:
    - duration
    - period
    - sample
    - storage
    slot_uri: MIXS:0000116
    alias: samp_store_dur
    owner: FoodFoodProductionFacility
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
    pattern: ^P(?:(?:\d+D|\d+M(?:\d+D)?|\d+Y(?:\d+M(?:\d+D)?)?)(?:T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S))?|T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S)|\d+W)$
    structured_pattern:
      syntax: ^{duration}$
      interpolated: true
      partial_match: true
  air_temp:
    name: air_temp
    description: Temperature of the air at the time of sampling
    title: air temperature
    examples:
    - value: 4 degree Celsius
    from_schema: https://w3id.org/mixs
    slot_uri: MIXS:0000124
    alias: air_temp
    owner: FoodFoodProductionFacility
    domain_of:
    - BuiltEnvironment
    - FoodFoodProductionFacility
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  room_dim:
    name: room_dim
    annotations:
      Expected_value:
        tag: Expected_value
        value: measurement value
      Preferred_unit:
        tag: Preferred_unit
        value: meter
    description: The length, width and height of sampling room
    title: room dimensions
    examples:
    - value: 4 meter x 4 meter x 4 meter
    from_schema: https://w3id.org/mixs
    keywords:
    - dimensions
    - room
    string_serialization: '{integer} {unit} x {integer} {unit} x {integer} {unit}'
    slot_uri: MIXS:0000192
    alias: room_dim
    owner: FoodFoodProductionFacility
    domain_of:
    - BuiltEnvironment
    - FoodFoodProductionFacility
    range: string
  freq_clean:
    name: freq_clean
    description: The number of times the sample location is cleaned. Frequency of
      cleaning might be on a Daily basis, Weekly, Monthly, Quarterly or Annually
    title: frequency of cleaning
    from_schema: https://w3id.org/mixs
    string_serialization: '{text}'
    slot_uri: MIXS:0000226
    alias: freq_clean
    owner: FoodFoodProductionFacility
    domain_of:
    - BuiltEnvironment
    - FoodFoodProductionFacility
    range: FreqCleanEnum
  samp_room_id:
    name: samp_room_id
    description: Sampling room number. This ID should be consistent with the designations
      on the building floor plans
    title: sampling room ID or name
    from_schema: https://w3id.org/mixs
    keywords:
    - identifier
    - room
    slot_uri: MIXS:0000244
    alias: samp_room_id
    owner: FoodFoodProductionFacility
    domain_of:
    - BuiltEnvironment
    - FoodFoodProductionFacility
    range: integer
  samp_vol_we_dna_ext:
    name: samp_vol_we_dna_ext
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: milliliter, gram, milligram, square centimeter
    description: 'Volume (ml) or mass (g) of total collected sample processed for
      DNA extraction. Note: total sample collected should be entered under the term
      Sample Size (MIXS:0000001)'
    title: sample volume or weight for DNA extraction
    examples:
    - value: 1500 milliliter
    in_subset:
    - nucleic acid sequence source
    from_schema: https://w3id.org/mixs
    keywords:
    - dna
    - sample
    - volume
    - weight
    slot_uri: MIXS:0000111
    alias: samp_vol_we_dna_ext
    owner: FoodFoodProductionFacility
    domain_of:
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  pool_dna_extracts:
    name: pool_dna_extracts
    description: Indicate whether multiple DNA extractions were mixed. If the answer
      yes, the number of extracts that were pooled should be given
    title: pooling of DNA extracts (if done)
    from_schema: https://w3id.org/mixs
    string_serialization: '{boolean},{integer}'
    slot_uri: MIXS:0000325
    alias: pool_dna_extracts
    owner: FoodFoodProductionFacility
    domain_of:
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - Soil
    range: string
  samp_store_loc:
    name: samp_store_loc
    annotations:
      Expected_value:
        tag: Expected_value
        value: location name
    description: Location at which sample was stored, usually name of a specific freezer/room
    title: sample storage location
    examples:
    - value: Freezer no:5
    from_schema: https://w3id.org/mixs
    keywords:
    - location
    - sample
    - storage
    string_serialization: '{text}'
    slot_uri: MIXS:0000755
    alias: samp_store_loc
    owner: FoodFoodProductionFacility
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
  surf_material:
    name: surf_material
    description: Surface materials at the point of sampling
    title: surface material
    examples:
    - value: wood
    from_schema: https://w3id.org/mixs
    keywords:
    - material
    - surface
    slot_uri: MIXS:0000758
    alias: surf_material
    owner: FoodFoodProductionFacility
    domain_of:
    - BuiltEnvironment
    - FoodFoodProductionFacility
    range: SurfMaterialEnum
  indoor_surf:
    name: indoor_surf
    description: Type of indoor surface
    title: indoor surface
    examples:
    - value: wall
    from_schema: https://w3id.org/mixs
    keywords:
    - indoor
    - surface
    slot_uri: MIXS:0000764
    alias: indoor_surf
    owner: FoodFoodProductionFacility
    domain_of:
    - BuiltEnvironment
    - FoodFoodProductionFacility
    range: IndoorSurfEnum
  avg_occup:
    name: avg_occup
    description: Daily average occupancy of room. Indicate the number of person(s)
      daily occupying the sampling room
    title: average daily occupancy
    examples:
    - value: '6'
    from_schema: https://w3id.org/mixs
    slot_uri: MIXS:0000775
    alias: avg_occup
    owner: FoodFoodProductionFacility
    domain_of:
    - BuiltEnvironment
    - FoodFoodProductionFacility
    range: float
  samp_floor:
    name: samp_floor
    annotations:
      Expected_value:
        tag: Expected_value
        value: enumeration
    description: The floor of the building, where the sampling room is located
    title: sampling floor
    examples:
    - value: 4th floor
    from_schema: https://w3id.org/mixs
    keywords:
    - floor
    string_serialization: '[1st floor|2nd floor|{integer} floor|basement|lobby]'
    slot_uri: MIXS:0000828
    alias: samp_floor
    owner: FoodFoodProductionFacility
    domain_of:
    - BuiltEnvironment
    - FoodFoodProductionFacility
    range: string
  genetic_mod:
    name: genetic_mod
    annotations:
      Expected_value:
        tag: Expected_value
        value: PMID, DOI, URL or text
    description: Genetic modifications of the genome of an organism, which may occur
      naturally by spontaneous mutation, or be introduced by some experimental means,
      e.g. specification of a transgene or the gene knocked-out or details of transient
      transfection
    title: genetic modification
    examples:
    - value: aox1A transgenic
    from_schema: https://w3id.org/mixs
    string_serialization: '{PMID}|{DOI}|{URL}'
    slot_uri: MIXS:0000859
    alias: genetic_mod
    owner: FoodFoodProductionFacility
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - PlantAssociated
    range: string
  coll_site_geo_feat:
    name: coll_site_geo_feat
    annotations:
      Expected_value:
        tag: Expected_value
        value: ENVO:00000002 or ENVO:00000070
    description: 'Text or terms that describe the geographic feature where the food
      sample was obtained by the researcher. This field accepts selected terms listed
      under the following ontologies: anthropogenic geographic feature (http://purl.obolibrary.org/obo/ENVO_00000002),
      for example agricultural fairground [ENVO:01000986]; garden [ENVO:00000011}
      or any of its subclasses; market [ENVO:01000987]; water well [ENVO:01000002];
      or human construction (http://purl.obolibrary.org/obo/ENVO_00000070)'
    title: collection site geographic feature
    examples:
    - value: farm [ENVO:00000078]
    from_schema: https://w3id.org/mixs
    keywords:
    - feature
    - geographic
    - site
    string_serialization: '{text}|{termLabel} [{termID}]'
    slot_uri: MIXS:0001183
    alias: coll_site_geo_feat
    owner: FoodFoodProductionFacility
    domain_of:
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
    required: true
  samp_source_mat_cat:
    name: samp_source_mat_cat
    description: This is the scientific role or category that the subject organism
      or material has with respect to an investigation.  This field accepts terms
      listed under specimen source material category (http://purl.obolibrary.org/obo/GENEPIO_0001237
      or http://purl.obolibrary.org/obo/OBI_0100051)
    title: sample source material category
    from_schema: https://w3id.org/mixs
    string_serialization: '{termLabel} [{termID}]'
    slot_uri: MIXS:0001154
    alias: samp_source_mat_cat
    owner: FoodFoodProductionFacility
    domain_of:
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
    required: true
  samp_type:
    name: samp_type
    description: The type of material from which the sample was obtained. For the
      Hydrocarbon package, samples include types like core, rock trimmings, drill
      cuttings, piping section, coupon, pigging debris, solid deposit, produced fluid,
      produced water, injected water, swabs, etc. For the Food Package, samples are
      usually categorized as food, body products or tissues, or environmental material.
      This field accepts terms listed under environmental specimen (http://purl.obolibrary.org/obo/GENEPIO_0001246)
    title: sample type
    examples:
    - value: built environment sample [GENEPIO:0001248]
    from_schema: https://w3id.org/mixs
    keywords:
    - sample
    - type
    slot_uri: MIXS:0000998
    alias: samp_type
    owner: FoodFoodProductionFacility
    domain_of:
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    range: string
    required: true
    pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$
    structured_pattern:
      syntax: ^{termLabel} \[{termID}\]$
      interpolated: true
      partial_match: true
  samp_stor_media:
    name: samp_stor_media
    description: The liquid that is added to the sample collection device prior to
      sampling. If the sample is pre-hydrated, indicate the liquid media the sample
      is pre-hydrated with for storage purposes. This field accepts terms listed under
      microbiological culture medium (http://purl.obolibrary.org/obo/MICRO_0000067).
      If the proper descriptor is not listed please use text to describe the sample
      storage media
    title: sample storage media
    from_schema: https://w3id.org/mixs
    slot_uri: MIXS:0001229
    alias: samp_stor_media
    owner: FoodFoodProductionFacility
    domain_of:
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
    required: true
    pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+)|(([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\])$
    structured_pattern:
      syntax: ^{text}|({termLabel} \[{termID}\])$
      interpolated: true
      partial_match: true
  samp_stor_device:
    name: samp_stor_device
    description: The container used to store the  sample. This field accepts terms
      listed under container (http://purl.obolibrary.org/obo/NCIT_C43186). If the
      proper descriptor is not listed please use text to describe the storage device
    title: sample storage device
    from_schema: https://w3id.org/mixs
    string_serialization: '{text}|{termLabel} [{termID}]'
    slot_uri: MIXS:0001228
    alias: samp_stor_device
    owner: FoodFoodProductionFacility
    domain_of:
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
    required: true
  food_product_type:
    name: food_product_type
    description: A food product type is a class of food products that is differentiated
      by its food composition (e.g., single- or multi-ingredient), processing and/or
      consumption characteristics. This does not include brand name products but it
      may include generic food dish categories. This field accepts terms under food
      product type (http://purl.obolibrary.org/obo/FOODON:03400361). For terms related
      to food product for an animal, consult food product for animal (http://purl.obolibrary.org/obo/FOODON_03309997).
      If the proper descriptor is not listed please use text to describe the food
      type. Multiple terms can be separated by one or more pipes
    title: food product type
    examples:
    - value: shrimp (peeled, deep-frozen) [FOODON:03317171]
    from_schema: https://w3id.org/mixs
    string_serialization: '{text}|{termLabel} [{termID}]'
    slot_uri: MIXS:0001184
    alias: food_product_type
    owner: FoodFoodProductionFacility
    domain_of:
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
    required: true
  IFSAC_category:
    name: IFSAC_category
    annotations:
      Expected_value:
        tag: Expected_value
        value: IFSAC term
    description: 'The IFSAC food categorization scheme has five distinct levels to
      which foods can be assigned, depending upon the type of food. First, foods are
      assigned to one of four food groups (aquatic animals, land animals, plants,
      and other). Food groups include increasingly specific food categories; dairy,
      eggs, meat and poultry, and game are in the land animal food group, and the
      category meat and poultry is further subdivided into more specific categories
      of meat (beef, pork, other meat) and poultry (chicken, turkey, other poultry).
      Finally, foods are differentiated by differences in food processing (such as
      pasteurized fluid dairy products, unpasteurized fluid dairy products, pasteurized
      solid and semi-solid dairy products, and unpasteurized solid and semi-solid
      dairy products. An IFSAC food category chart is available from https://www.cdc.gov/foodsafety/ifsac/projects/food-categorization-scheme.html
      PMID: 28926300'
    title: Interagency Food Safety Analytics Collaboration (IFSAC) category
    examples:
    - value: Plants:Produce:Vegetables:Herbs:Dried Herbs
    from_schema: https://w3id.org/mixs
    keywords:
    - food
    string_serialization: '{text}'
    slot_uri: MIXS:0001179
    multivalued: true
    alias: IFSAC_category
    owner: FoodFoodProductionFacility
    domain_of:
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
    required: true
  food_product_qual:
    name: food_product_qual
    description: Descriptors for describing food visually or via other senses, which
      is useful for tasks like food inspection where little prior knowledge of how
      the food came to be is available. Some terms like "food (frozen)" are both a
      quality descriptor and the output of a process. This field accepts terms listed
      under food product by quality (http://purl.obolibrary.org/obo/FOODON_00002454)
    title: food product by quality
    from_schema: https://w3id.org/mixs
    slot_uri: MIXS:0001213
    alias: food_product_qual
    owner: FoodFoodProductionFacility
    domain_of:
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
    required: true
    pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$
    structured_pattern:
      syntax: ^{termLabel} \[{termID}\]$
      interpolated: true
      partial_match: true
  food_contact_surf:
    name: food_contact_surf
    description: The specific container or coating materials in direct contact with
      the food. Multiple values can be assigned.  This field accepts terms listed
      under food contact surface (http://purl.obolibrary.org/obo/FOODON_03500010)
    title: food contact surface
    from_schema: https://w3id.org/mixs
    string_serialization: '{text}|{termLabel} [{termID}]'
    slot_uri: MIXS:0001131
    multivalued: true
    alias: food_contact_surf
    owner: FoodFoodProductionFacility
    domain_of:
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
    required: true
  facility_type:
    name: facility_type
    description: Establishment details about the type of facility where the sample
      was taken. This is independent of the specific product(s) within the facility
    title: facility type
    examples:
    - value: manufacturing-processing
    from_schema: https://w3id.org/mixs
    keywords:
    - facility
    - type
    slot_uri: MIXS:0001252
    multivalued: true
    alias: facility_type
    owner: FoodFoodProductionFacility
    domain_of:
    - FoodFoodProductionFacility
    range: FacilityTypeEnum
  food_trav_mode:
    name: food_trav_mode
    description: A descriptor for the method of movement of food commodity along the
      food distribution system.  This field accepts terms listed under travel mode
      (http://purl.obolibrary.org/obo/GENEPIO_0001064). If the proper descrptor is
      not listed please use text to describe the mode of travel. Multiple terms can
      be separated by one or more pipes
    title: food shipping transportation method
    examples:
    - value: train travel [GENEPIO:0001060]
    from_schema: https://w3id.org/mixs
    keywords:
    - food
    - method
    - transport
    slot_uri: MIXS:0001137
    multivalued: true
    alias: food_trav_mode
    owner: FoodFoodProductionFacility
    domain_of:
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
    pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$
    structured_pattern:
      syntax: ^{termLabel} \[{termID}\]$
      interpolated: true
      partial_match: true
  food_trav_vehic:
    name: food_trav_vehic
    annotations:
      Expected_value:
        tag: Expected_value
        value: ENVO:01000604
    description: A descriptor for the mobile machine which is used to transport food
      commodities along the food distribution system.  This field accepts terms listed
      under vehicle (http://purl.obolibrary.org/obo/ENVO_01000604). If the proper
      descrptor is not listed please use text to describe the mode of travel. Multiple
      terms can be separated by one or more pipes
    title: food shipping transportation vehicle
    examples:
    - value: aircraft [ENVO:01001488]|car [ENVO:01000605]
    from_schema: https://w3id.org/mixs
    keywords:
    - food
    - transport
    string_serialization: '{text}|{termLabel} [{termID}]'
    slot_uri: MIXS:0001138
    multivalued: true
    alias: food_trav_vehic
    owner: FoodFoodProductionFacility
    domain_of:
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
  samp_transport_dur:
    name: samp_transport_dur
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: days
    description: The duration of time from when the sample was collected until processed.
      Indicate the duration for which the sample was stored written in ISO 8601 format
    title: sample transport duration
    examples:
    - value: P10D
    from_schema: https://w3id.org/mixs
    keywords:
    - duration
    - period
    - sample
    - transport
    slot_uri: MIXS:0001231
    alias: samp_transport_dur
    owner: FoodFoodProductionFacility
    domain_of:
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
    pattern: ^P(?:(?:\d+D|\d+M(?:\d+D)?|\d+Y(?:\d+M(?:\d+D)?)?)(?:T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S))?|T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S)|\d+W)$
    structured_pattern:
      syntax: ^{duration}$
      interpolated: true
      partial_match: true
  samp_transport_temp:
    name: samp_transport_temp
    annotations:
      Expected_value:
        tag: Expected_value
        value: text or measurement value
      Preferred_unit:
        tag: Preferred_unit
        value: degree Celsius
    description: Temperature at which sample was transported, e.g. -20 or 4 degree
      Celsius
    title: sample transport temperature
    examples:
    - value: 4 degree Celsius
    from_schema: https://w3id.org/mixs
    keywords:
    - sample
    - temperature
    - transport
    string_serialization: '{float} {unit} {text}'
    slot_uri: MIXS:0001232
    alias: samp_transport_temp
    owner: FoodFoodProductionFacility
    domain_of:
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
  samp_collect_method:
    name: samp_collect_method
    description: The method employed for collecting the sample
    title: sample collection method
    examples:
    - value: environmental swab sampling
    from_schema: https://w3id.org/mixs
    slot_uri: MIXS:0001225
    alias: samp_collect_method
    owner: FoodFoodProductionFacility
    domain_of:
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
    pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$|([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{PMID}|{DOI}|{URL}|{text}$
      interpolated: true
      partial_match: true
  num_samp_collect:
    name: num_samp_collect
    description: The number of samples collected during the current sampling event
    title: number of samples collected
    examples:
    - value: 116 samples
    from_schema: https://w3id.org/mixs
    keywords:
    - number
    - sample
    slot_uri: MIXS:0001224
    alias: num_samp_collect
    owner: FoodFoodProductionFacility
    domain_of:
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  lot_number:
    name: lot_number
    annotations:
      Expected_value:
        tag: Expected_value
        value: lot number, item
    description: 'A distinctive alpha-numeric identification code assigned by the
      manufacturer or distributor to a specific quantity of manufactured material
      or product within a batch. Synonym: Batch Number.  The submitter should provide
      lot number of the item followed by the item name for which the lot number was
      provided'
    title: lot number
    examples:
    - value: 1239ABC01A, split Cornish hens
    from_schema: https://w3id.org/mixs
    keywords:
    - number
    string_serialization: '{integer}, {text}'
    slot_uri: MIXS:0001147
    multivalued: true
    alias: lot_number
    owner: FoodFoodProductionFacility
    domain_of:
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
  hygienic_area:
    name: hygienic_area
    annotations:
      Expected_value:
        tag: Expected_value
        value: Expected value
    description: The subdivision of areas within a food production facility according
      to hygienic requirements. This field accepts terms listed under hygienic food
      production area (http://purl.obolibrary.org/obo/ENVO). Please add a term that
      most accurately indicates the hygienic area your sample was taken from according
      to the definitions provided
    title: hygienic food production area
    examples:
    - value: Low Hygiene Area
    from_schema: https://w3id.org/mixs
    keywords:
    - area
    - food
    - production
    string_serialization: '{text}'
    slot_uri: MIXS:0001253
    alias: hygienic_area
    owner: FoodFoodProductionFacility
    domain_of:
    - FoodFoodProductionFacility
    range: string
  env_monitoring_zone:
    name: env_monitoring_zone
    annotations:
      Expected_value:
        tag: Expected_value
        value: ENVO
    description: An environmental monitoring zone is a formal designation as part
      of an environmental monitoring program, in which areas of a food production
      facility are categorized, commonly as zones 1-4, based on likelihood or risk
      of foodborne pathogen contamination. This field accepts terms listed under food
      production environmental monitoring zone (http://purl.obolibrary.org/obo/ENVO).
      Please add a term to indicate the environmental monitoring zone the sample was
      taken from
    title: food production environmental monitoring zone
    examples:
    - value: Zone 1
    from_schema: https://w3id.org/mixs
    keywords:
    - environmental
    - food
    - production
    string_serialization: '{text}'
    slot_uri: MIXS:0001254
    alias: env_monitoring_zone
    owner: FoodFoodProductionFacility
    domain_of:
    - FoodFoodProductionFacility
    range: string
  area_samp_size:
    name: area_samp_size
    annotations:
      Expected_value:
        tag: Expected_value
        value: measurement value
      Preferred_unit:
        tag: Preferred_unit
        value: centimeter
    description: The total amount or size (volume (ml), mass (g) or area (m2) ) of
      sample collected
    title: area sampled size
    examples:
    - value: 12 centimeter x 12 centimeter
    from_schema: https://w3id.org/mixs
    keywords:
    - area
    - sample
    - size
    string_serialization: '{integer} {unit} x {integer} {unit}'
    slot_uri: MIXS:0001255
    alias: area_samp_size
    owner: FoodFoodProductionFacility
    domain_of:
    - FoodFoodProductionFacility
    range: string
  samp_surf_moisture:
    name: samp_surf_moisture
    description: Degree of water held on a sampled surface.  If present, user can
      state the degree of water held on surface (intermittent moisture, submerged).
      If no surface moisture is present indicate not present
    title: sample surface moisture
    examples:
    - value: submerged
    from_schema: https://w3id.org/mixs
    keywords:
    - moisture
    - sample
    - surface
    slot_uri: MIXS:0001256
    multivalued: true
    alias: samp_surf_moisture
    owner: FoodFoodProductionFacility
    domain_of:
    - FoodFoodProductionFacility
    range: SampSurfMoistureEnum
  samp_loc_condition:
    name: samp_loc_condition
    description: The condition of the sample location at the time of sampling
    title: sample location condition
    examples:
    - value: new
    from_schema: https://w3id.org/mixs
    keywords:
    - condition
    - location
    - sample
    slot_uri: MIXS:0001257
    alias: samp_loc_condition
    owner: FoodFoodProductionFacility
    domain_of:
    - FoodFoodProductionFacility
    range: SampLocConditionEnum
  biocide_used:
    name: biocide_used
    annotations:
      Expected_value:
        tag: Expected_value
        value: commercial name of biocide, active ingredient in biocide or class of
          biocide
    description: Substance intended for preventing, neutralizing, destroying, repelling,
      or mitigating the effects of any pest or microorganism; that inhibits the growth,
      reproduction, and activity of organisms, including fungal cells; decreases the
      number of fungi or pests present; deters microbial growth and degradation of
      other ingredients in the formulation. Indicate the biocide used on the location
      where the sample was taken. Multiple terms can be separated by pipes
    title: biocide
    examples:
    - value: Quaternary ammonium compound|SterBac
    from_schema: https://w3id.org/mixs
    string_serialization: '{text}'
    slot_uri: MIXS:0001258
    multivalued: true
    alias: biocide_used
    owner: FoodFoodProductionFacility
    domain_of:
    - FoodFoodProductionFacility
    range: string
  ster_meth_samp_room:
    name: ster_meth_samp_room
    annotations:
      Expected_value:
        tag: Expected_value
        value: ENVO:01001026
    description: The method used to sterilize the sampling room. This field accepts
      terms listed under electromagnetic radiation (http://purl.obolibrary.org/obo/ENVO_01001026).
      If the proper descriptor is not listed, please use text to describe the sampling
      room sterilization method. Multiple terms can be separated by pipes
    title: sampling room sterilization method
    examples:
    - value: ultraviolet radiation [ENVO:21001216]|infrared radiation [ENVO:21001214]
    from_schema: https://w3id.org/mixs
    keywords:
    - method
    - room
    string_serialization: '{text}|{termLabel} [{termID}]'
    slot_uri: MIXS:0001259
    multivalued: true
    alias: ster_meth_samp_room
    owner: FoodFoodProductionFacility
    domain_of:
    - FoodFoodProductionFacility
    range: string
  enrichment_protocol:
    name: enrichment_protocol
    description: The microbiological workflow or protocol followed to test for the
      presence or enumeration of the target microbial analyte(s). Please provide a
      PubMed or DOI reference for published protocols
    title: enrichment protocol
    examples:
    - value: 'BAM Chapter 4: Enumeration of Escherichia coli and the Coliform Bacteria'
    from_schema: https://w3id.org/mixs
    keywords:
    - enrichment
    - protocol
    slot_uri: MIXS:0001177
    alias: enrichment_protocol
    owner: FoodFoodProductionFacility
    domain_of:
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
    pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$|([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{PMID}|{DOI}|{URL}|{text}$
      interpolated: true
      partial_match: true
  cult_target:
    name: cult_target
    annotations:
      Expected_value:
        tag: Expected_value
        value: NCIT:C14250 or NCBI taxid or culture independent
    description: The target microbial analyte in terms of investigation scope. This
      field accepts terms under organism (http://purl.obolibrary.org/obo/NCIT_C14250).
      This field also accepts identification numbers from NCBI under https://www.ncbi.nlm.nih.gov/taxonomy
    title: culture target microbial analyte
    examples:
    - value: Listeria monocytogenes [NCIT:C86502]
    from_schema: https://w3id.org/mixs
    keywords:
    - culture
    - microbial
    - target
    string_serialization: '{termLabel} [{termID}]|{integer}'
    slot_uri: MIXS:0001119
    multivalued: true
    alias: cult_target
    owner: FoodFoodProductionFacility
    domain_of:
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
  microb_cult_med:
    name: microb_cult_med
    description: A culture medium used to select for, grow, and maintain prokaryotic
      microorganisms. Can be in either liquid (broth) or solidified (e.g. with agar)
      forms. This field accepts terms listed under microbiological culture medium
      (http://purl.obolibrary.org/obo/MICRO_0000067). If the proper descriptor is
      not listed please use text to describe the culture medium
    title: microbiological culture medium
    examples:
    - value: brain heart infusion agar [MICRO:0000566]
    from_schema: https://w3id.org/mixs
    keywords:
    - culture
    - microbiological
    slot_uri: MIXS:0001216
    alias: microb_cult_med
    owner: FoodFoodProductionFacility
    domain_of:
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
    pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+)|(([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\])$
    structured_pattern:
      syntax: ^{text}|({termLabel} \[{termID}\])$
      interpolated: true
      partial_match: true
  timepoint:
    name: timepoint
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: hours or days
    description: Time point at which a sample or observation is made or taken from
      a biomaterial as measured from some reference point. Indicate the timepoint
      written in ISO 8601 format
    title: timepoint
    examples:
    - value: PT24H
    from_schema: https://w3id.org/mixs
    keywords:
    - time
    slot_uri: MIXS:0001173
    alias: timepoint
    owner: FoodFoodProductionFacility
    domain_of:
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
    pattern: ^P(?:(?:\d+D|\d+M(?:\d+D)?|\d+Y(?:\d+M(?:\d+D)?)?)(?:T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S))?|T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S)|\d+W)$
    structured_pattern:
      syntax: ^{duration}$
      interpolated: true
      partial_match: true
  bacterial_density:
    name: bacterial_density
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: colony forming units per milliliter; colony forming units per gram
          of dry weight
    description: Number of bacteria in sample, as defined by bacteria density (http://purl.obolibrary.org/obo/GENEPIO_0000043)
    title: bacteria density
    examples:
    - value: 10 colony forming units per gram dry weight
    from_schema: https://w3id.org/mixs
    keywords:
    - density
    slot_uri: MIXS:0001194
    alias: bacterial_density
    owner: FoodFoodProductionFacility
    domain_of:
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  cult_isol_date:
    name: cult_isol_date
    description: The datetime marking the end of a process in which a sample yields
      a positive result for the target microbial analyte(s) in the form of an isolated
      colony or colonies
    title: culture isolation date
    examples:
    - value: '2018-05-11T10:00:00+01:00'
    from_schema: https://w3id.org/mixs
    keywords:
    - culture
    - date
    - isolation
    slot_uri: MIXS:0001181
    alias: cult_isol_date
    owner: FoodFoodProductionFacility
    domain_of:
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: datetime
  cult_result:
    name: cult_result
    description: Any result of a bacterial culture experiment reported as a binary
      assessment such as positive/negative, active/inactive
    title: culture result
    examples:
    - value: positive
    from_schema: https://w3id.org/mixs
    keywords:
    - culture
    slot_uri: MIXS:0001117
    alias: cult_result
    owner: FoodFoodProductionFacility
    domain_of:
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: CultResultEnum
  cult_result_org:
    name: cult_result_org
    description: Taxonomic information about the cultured organism(s)
    title: culture result organism
    examples:
    - value: Listeria monocytogenes [NCIT:C86502]
    from_schema: https://w3id.org/mixs
    keywords:
    - culture
    - organism
    slot_uri: MIXS:0001118
    multivalued: true
    alias: cult_result_org
    owner: FoodFoodProductionFacility
    domain_of:
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
    pattern: ^(([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\])|[1-9][0-9]*$
    structured_pattern:
      syntax: ^({termLabel} \[{termID}\])|{integer}$
      interpolated: true
      partial_match: true
  subspecf_gen_lin:
    name: subspecf_gen_lin
    annotations:
      Expected_value:
        tag: Expected_value
        value: Genetic lineage below lowest rank of NCBI taxonomy, which is subspecies,
          e.g. serovar, biotype, ecotype, variety, cultivar
    description: Information about the genetic distinctness of the sequenced organism
      below the subspecies level, e.g., serovar, serotype, biotype, ecotype, or any
      relevant genetic typing schemes like Group I plasmid. Subspecies should not
      be recorded in this term, but in the NCBI taxonomy. Supply both the lineage
      name and the lineage rank separated by a colon, e.g., biovar:abc123
    title: subspecific genetic lineage
    examples:
    - value: serovar:Newport
    in_subset:
    - nucleic acid sequence source
    from_schema: https://w3id.org/mixs
    keywords:
    - lineage
    string_serialization: '{rank name}:{text}'
    slot_uri: MIXS:0000020
    alias: subspecf_gen_lin
    owner: FoodFoodProductionFacility
    domain_of:
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - MimarksC
    - FoodFoodProductionFacility
    range: string
  samp_pooling:
    name: samp_pooling
    description: Physical combination of several instances of like material, e.g.
      RNA extracted from samples or dishes of cell cultures into one big aliquot of
      cells. Please provide a short description of the samples that were pooled
    title: sample pooling
    examples:
    - value: 5uL of extracted genomic DNA from 5 leaves were pooled
    from_schema: https://w3id.org/mixs
    keywords:
    - pooling
    - sample
    slot_uri: MIXS:0001153
    multivalued: true
    alias: samp_pooling
    owner: FoodFoodProductionFacility
    domain_of:
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
  samp_purpose:
    name: samp_purpose
    annotations:
      Expected_value:
        tag: Expected_value
        value: enumeration or {text}
    description: The reason that the sample was collected
    title: purpose of sampling
    examples:
    - value: field trial
    from_schema: https://w3id.org/mixs
    keywords:
    - purpose
    string_serialization: '[active surveillance in response to an outbreak|active
      surveillance not initiated by an outbreak|clinical trial|cluster investigation|environmental
      assessment|farm sample|field trial|for cause|industry internal investigation|market
      sample|passive surveillance|population based studies|research|research and development]
      or {text}'
    slot_uri: MIXS:0001151
    alias: samp_purpose
    owner: FoodFoodProductionFacility
    domain_of:
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
  samp_rep_tech:
    name: samp_rep_tech
    description: Repeated measurements of the same sample that show independent measures
      of the noise associated with the equipment and the protocols
    title: technical sample replicate
    examples:
    - value: 10 replicates
    from_schema: https://w3id.org/mixs
    keywords:
    - sample
    slot_uri: MIXS:0001227
    alias: samp_rep_tech
    owner: FoodFoodProductionFacility
    domain_of:
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  samp_rep_biol:
    name: samp_rep_biol
    description: Measurements of biologically distinct samples that show biological
      variation
    title: biological sample replicate
    examples:
    - value: 6 replicates
    from_schema: https://w3id.org/mixs
    keywords:
    - sample
    slot_uri: MIXS:0001226
    alias: samp_rep_biol
    owner: FoodFoodProductionFacility
    domain_of:
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  samp_transport_cont:
    name: samp_transport_cont
    description: Conatiner in which the sample was stored during transport. Indicate
      the location name
    title: sample transport  container
    examples:
    - value: cooler
    from_schema: https://w3id.org/mixs
    keywords:
    - sample
    - transport
    slot_uri: MIXS:0001230
    alias: samp_transport_cont
    owner: FoodFoodProductionFacility
    domain_of:
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: SampTransportContEnum
  study_design:
    name: study_design
    annotations:
      Expected_value:
        tag: Expected_value
        value: OBI:0500000
    description: A plan specification comprised of protocols (which may specify how
      and what kinds of data will be gathered) that are executed as part of an investigation
      and is realized during a study design execution. This field accepts terms under
      study design (http://purl.obolibrary.org/obo/OBI_0500000). If the proper descriptor
      is not listed please use text to describe the study design. Multiple terms can
      be separated by pipes
    title: study design
    examples:
    - value: in vitro design [OBI:0001285]
    from_schema: https://w3id.org/mixs
    string_serialization: '{text}|{termLabel} [{termID}]'
    slot_uri: MIXS:0001236
    multivalued: true
    alias: study_design
    owner: FoodFoodProductionFacility
    domain_of:
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
  nucl_acid_ext_kit:
    name: nucl_acid_ext_kit
    annotations:
      Expected_value:
        tag: Expected_value
        value: The name of an extraction kit
    description: The name of the extraction kit used to recover the nucleic acid fraction
      of an input material is performed
    title: nucleic acid extraction kit
    examples:
    - value: Qiagen PowerSoil Kit
    from_schema: https://w3id.org/mixs
    keywords:
    - kit
    string_serialization: '{text}'
    slot_uri: MIXS:0001223
    multivalued: true
    alias: nucl_acid_ext_kit
    owner: FoodFoodProductionFacility
    domain_of:
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
  library_prep_kit:
    name: library_prep_kit
    description: Packaged kits (containing adapters, indexes, enzymes, buffers etc.),
      tailored for specific sequencing workflows, which allow the simplified preparation
      of sequencing-ready libraries for small genomes, amplicons, and plasmids
    title: library preparation kit
    examples:
    - value: Illumina DNA Prep
    from_schema: https://w3id.org/mixs
    string_serialization: '{text}'
    slot_uri: MIXS:0001145
    alias: library_prep_kit
    owner: FoodFoodProductionFacility
    domain_of:
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
  sequencing_kit:
    name: sequencing_kit
    annotations:
      Expected_value:
        tag: Expected_value
        value: name of sequencing kit used
    description: Pre-filled, ready-to-use reagent cartridges. Used to produce improved
      chemistry, cluster density and read length as well as improve quality (Q) scores.
      Reagent components are encoded to interact with the sequencing system to validate
      compatibility with user-defined applications. Indicate name of the sequencing
      kit
    title: sequencing kit
    examples:
    - value: NextSeq 500/550 High Output Kit v2.5 (75 Cycles)
    from_schema: https://w3id.org/mixs
    keywords:
    - kit
    string_serialization: '{text}'
    slot_uri: MIXS:0001155
    alias: sequencing_kit
    owner: FoodFoodProductionFacility
    domain_of:
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
  sequencing_location:
    name: sequencing_location
    description: The location the sequencing run was performed. Indicate the name
      of the lab or core facility where samples were sequenced
    title: sequencing location
    examples:
    - value: University of Maryland Genomics Resource Center
    from_schema: https://w3id.org/mixs
    keywords:
    - location
    slot_uri: MIXS:0001156
    alias: sequencing_location
    owner: FoodFoodProductionFacility
    domain_of:
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
  study_inc_temp:
    name: study_inc_temp
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: degree Celsius
    description: Sample incubation temperature if unpublished or unvalidated method
      is used
    title: study incubation temperature
    examples:
    - value: 37 degree Celsius
    from_schema: https://w3id.org/mixs
    keywords:
    - incubation
    - temperature
    slot_uri: MIXS:0001238
    alias: study_inc_temp
    owner: FoodFoodProductionFacility
    domain_of:
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  study_inc_dur:
    name: study_inc_dur
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: hours or days
    description: Sample incubation duration if unpublished or unvalidated method is
      used. Indicate the timepoint written in ISO 8601 format
    title: study incubation duration
    examples:
    - value: PT24H
    from_schema: https://w3id.org/mixs
    keywords:
    - duration
    - incubation
    - period
    slot_uri: MIXS:0001237
    alias: study_inc_dur
    owner: FoodFoodProductionFacility
    domain_of:
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
    pattern: ^P(?:(?:\d+D|\d+M(?:\d+D)?|\d+Y(?:\d+M(?:\d+D)?)?)(?:T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S))?|T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S)|\d+W)$
    structured_pattern:
      syntax: ^{duration}$
      interpolated: true
      partial_match: true
  study_timecourse:
    name: study_timecourse
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: dpi
    description: For time-course research studies involving samples of the food commodity,
      indicate the total duration of the time-course study
    title: time-course duration
    examples:
    - value: 2 days post inoculation
    from_schema: https://w3id.org/mixs
    keywords:
    - duration
    - period
    - time
    slot_uri: MIXS:0001239
    alias: study_timecourse
    owner: FoodFoodProductionFacility
    domain_of:
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  study_tmnt:
    name: study_tmnt
    annotations:
      Expected_value:
        tag: Expected_value
        value: MCO:0000866
    description: A process in which the act is intended to modify or alter some other
      material entity.  From the study design, each treatment is comprised of one
      level of one or multiple factors. This field accepts terms listed under treatment
      (http://purl.obolibrary.org/obo/MCO_0000866). If the proper descriptor is not
      listed please use text to describe the study treatment. Multiple terms can be
      separated by one or more pipes
    title: study treatment
    examples:
    - value: Factor A|spike-in|levels high, medium, low
    from_schema: https://w3id.org/mixs
    keywords:
    - treatment
    string_serialization: '{text}|{termLabel} [{termID}]'
    slot_uri: MIXS:0001240
    multivalued: true
    alias: study_tmnt
    owner: FoodFoodProductionFacility
    domain_of:
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
  food_source:
    name: food_source
    description: Type of plant or animal from which the food product or its major
      ingredient is derived or a chemical food source [FDA CFSAN 1995]
    title: food source
    examples:
    - value: giant tiger prawn [FOODON:03412612]
    from_schema: https://w3id.org/mixs
    string_serialization: '{termLabel} [{termID}]'
    slot_uri: MIXS:0001139
    alias: food_source
    owner: FoodFoodProductionFacility
    domain_of:
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
  food_dis_point:
    name: food_dis_point
    description: 'A reference to a place on the Earth, by its name or by its geographical
      location that refers to a distribution point along the food chain. This field
      accepts terms listed under geographic location (http://purl.obolibrary.org/obo/GAZ_00000448).
      Reference: Adam Diamond, James Barham. Moving Food Along the Value Chain: Innovations
      in Regional Food Distribution. U.S. Dept. of Agriculture, Agricultural Marketing
      Service. Washington, DC. March 2012. http://dx.doi.org/10.9752/MS045.03-2012'
    title: food distribution point geographic location
    examples:
    - value: 'USA: Delmarva, Peninsula'
    from_schema: https://w3id.org/mixs
    keywords:
    - food
    - geographic
    - location
    slot_uri: MIXS:0001203
    multivalued: true
    alias: food_dis_point
    owner: FoodFoodProductionFacility
    domain_of:
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
    pattern: '^([^\s-]{1,2}|[^\s-]+.+[^\s-]+): ([^\s-]{1,2}|[^\s-]+.+[^\s-]+), ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$'
    structured_pattern:
      syntax: '^{text}: {text}, {text}$'
      interpolated: true
      partial_match: true
  food_dis_point_city:
    name: food_dis_point_city
    annotations:
      Expected_value:
        tag: Expected_value
        value: GAZ:00000448
    description: 'A reference to a place on the Earth, by its name or by its geographical
      location that refers to a distribution point along the food chain. This field
      accepts terms listed under geographic location (http://purl.obolibrary.org/obo/GAZ_00000448).
      Reference: Adam Diamond, James Barham. Moving Food Along the Value Chain: Innovations
      in Regional Food Distribution. U.S. Dept. of Agriculture, Agricultural Marketing
      Service. Washington, DC. March 2012. http://dx.doi.org/10.9752/MS045.03-2012'
    title: food distribution point geographic location (city)
    examples:
    - value: Atlanta[GAZ:00004445]
    from_schema: https://w3id.org/mixs
    keywords:
    - food
    - geographic
    - location
    string_serialization: '{text}|{termLabel} [{termID}]'
    slot_uri: MIXS:0001204
    multivalued: true
    alias: food_dis_point_city
    owner: FoodFoodProductionFacility
    domain_of:
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    range: string
  food_origin:
    name: food_origin
    description: A reference to a place on the Earth, by its name or by its geographical
      location that describes the origin of the food commodity, either in terms of
      its cultivation or production. This field accepts terms listed under geographic
      location (http://purl.obolibrary.org/obo/GAZ_00000448)
    title: food product origin geographic location
    examples:
    - value: 'USA: Delmarva, Peninsula'
    from_schema: https://w3id.org/mixs
    keywords:
    - food
    - geographic
    - location
    - product
    slot_uri: MIXS:0001207
    alias: food_origin
    owner: FoodFoodProductionFacility
    domain_of:
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
    pattern: '^([^\s-]{1,2}|[^\s-]+.+[^\s-]+): ([^\s-]{1,2}|[^\s-]+.+[^\s-]+), ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$'
    structured_pattern:
      syntax: '^{text}: {text}, {text}$'
      interpolated: true
      partial_match: true
  food_prod_synonym:
    name: food_prod_synonym
    description: Other names by which the food product is known by (e.g., regional
      or non-English names)
    title: food product synonym
    examples:
    - value: pinot gris
    from_schema: https://w3id.org/mixs
    keywords:
    - food
    - product
    slot_uri: MIXS:0001212
    multivalued: true
    alias: food_prod_synonym
    owner: FoodFoodProductionFacility
    domain_of:
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
  food_additive:
    name: food_additive
    annotations:
      Expected_value:
        tag: Expected_value
        value: FOODON:03412972
    description: A substance or substances added to food to maintain or improve safety
      and freshness, to improve or maintain nutritional value, or improve taste, texture
      and appearance.  This field accepts terms listed under food additive (http://purl.obolibrary.org/obo/FOODON_03412972).
      Multiple terms can be separated by one or more pipes, but please consider limiting
      this list to the top 5 ingredients listed in order as on the food label.  See
      also, https://www.fda.gov/food/food-ingredients-packaging/overview-food-ingredients-additives-colors
    title: food additive
    examples:
    - value: xanthan gum [FOODON:03413321]
    from_schema: https://w3id.org/mixs
    keywords:
    - food
    string_serialization: '{text}|{termLabel} [{termID}]'
    slot_uri: MIXS:0001200
    multivalued: true
    alias: food_additive
    owner: FoodFoodProductionFacility
    domain_of:
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
  food_trace_list:
    name: food_trace_list
    description: The FDA is proposing to establish additional traceability recordkeeping
      requirements (beyond what is already required in existing regulations) for persons
      who manufacture, process, pack, or hold foods the Agency has designated for
      inclusion on the Food Traceability List. The Food Traceability List (FTL) identifies
      the foods for which the additional traceability records described in the proposed
      rule would be required. The term  Food Traceability List  (FTL) refers not only
      to the foods specifically listed (https://www.fda.gov/media/142303/download),
      but also to any foods that contain listed foods as ingredients
    title: food traceability list category
    examples:
    - value: tropical tree fruits
    from_schema: https://w3id.org/mixs
    keywords:
    - food
    slot_uri: MIXS:0001214
    alias: food_trace_list
    owner: FoodFoodProductionFacility
    domain_of:
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: FoodTraceListEnum
  part_plant_animal:
    name: part_plant_animal
    annotations:
      Expected_value:
        tag: Expected_value
        value: FOODON:03420116
    description: The anatomical part of the organism being involved in food production
      or consumption; e.g., a carrot is the root of the plant (root vegetable). This
      field accepts terms listed under part of plant or animal (http://purl.obolibrary.org/obo/FOODON_03420116)
    title: part of plant or animal
    examples:
    - value: chuck [FOODON:03530021]
    from_schema: https://w3id.org/mixs
    keywords:
    - animal
    - plant
    string_serialization: '{text}|{termLabel} [{termID}]'
    slot_uri: MIXS:0001149
    multivalued: true
    alias: part_plant_animal
    owner: FoodFoodProductionFacility
    domain_of:
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
  food_ingredient:
    name: food_ingredient
    annotations:
      Expected_value:
        tag: Expected_value
        value: FOODON
    description: In this field, please list individual ingredients for multi-component
      food [FOODON:00002501] and simple foods that is not captured in food_type.  Please
      use terms that are present in FoodOn.  Multiple terms can be separated by one
      or more pipes |, but please consider limiting this list to the top 5 ingredients
      listed in order as on the food label.  See also, https://www.fda.gov/food/food-ingredients-packaging/overview-food-ingredients-additives-colors
    title: food ingredient
    examples:
    - value: bean (whole) [FOODON:00002753]
    from_schema: https://w3id.org/mixs
    keywords:
    - food
    - ingredient
    string_serialization: '{text}|{termLabel} [{termID}]'
    slot_uri: MIXS:0001205
    multivalued: true
    alias: food_ingredient
    owner: FoodFoodProductionFacility
    domain_of:
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
  spec_intended_cons:
    name: spec_intended_cons
    description: Food consumer type, human or animal, for which the food product is
      produced and marketed. This field accepts terms listed under food consumer group
      (http://purl.obolibrary.org/obo/FOODON_03510136)
    title: specific intended consumer
    examples:
    - value: senior as food consumer [FOODON:03510254]
    from_schema: https://w3id.org/mixs
    keywords:
    - consumer
    slot_uri: MIXS:0001234
    multivalued: true
    alias: spec_intended_cons
    owner: FoodFoodProductionFacility
    domain_of:
    - FoodFoodProductionFacility
    range: string
    pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$
    structured_pattern:
      syntax: ^{termLabel} \[{termID}\]$
      interpolated: true
      partial_match: true
  HACCP_term:
    name: HACCP_term
    description: Hazard Analysis Critical Control Points (HACCP) food safety terms;
      This field accepts terms listed under HACCP guide food safety term (http://purl.obolibrary.org/obo/FOODON_03530221)
    title: Hazard Analysis Critical Control Points (HACCP) guide food safety term
    examples:
    - value: tetrodotoxic poisoning [FOODON:03530249]
    from_schema: https://w3id.org/mixs
    keywords:
    - food
    - term
    slot_uri: MIXS:0001215
    multivalued: true
    alias: HACCP_term
    owner: FoodFoodProductionFacility
    domain_of:
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
    pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$
    structured_pattern:
      syntax: ^{termLabel} \[{termID}\]$
      interpolated: true
      partial_match: true
  dietary_claim_use:
    name: dietary_claim_use
    annotations:
      Expected_value:
        tag: Expected_value
        value: FOODON:03510023
    description: These descriptors are used either for foods intended for special
      dietary use as defined in 21 CFR 105 or for foods that have special characteristics
      indicated in the name or labeling. This field accepts terms listed under dietary
      claim or use (http://purl.obolibrary.org/obo/FOODON_03510023). Multiple terms
      can be separated by one or more pipes, but please consider limiting this list
      to the most prominent dietary claim or use
    title: dietary claim or use
    examples:
    - value: No preservatives [FOODON:03510113]
    from_schema: https://w3id.org/mixs
    keywords:
    - diet
    - use
    string_serialization: '{text}|{termLabel} [{termID}]'
    slot_uri: MIXS:0001199
    multivalued: true
    alias: dietary_claim_use
    owner: FoodFoodProductionFacility
    domain_of:
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
  food_allergen_label:
    name: food_allergen_label
    annotations:
      Expected_value:
        tag: Expected_value
        value: FOODON:03510213
    description: A label indication that the product contains a recognized allergen.
      This field accepts terms listed under dietary claim or use (http://purl.obolibrary.org/obo/FOODON_03510213)
    title: food allergen labeling
    examples:
    - value: food allergen labelling about crustaceans and products thereof [FOODON:03510215]
    from_schema: https://w3id.org/mixs
    keywords:
    - food
    string_serialization: '{text}|{termLabel} [{termID}]'
    slot_uri: MIXS:0001201
    multivalued: true
    alias: food_allergen_label
    owner: FoodFoodProductionFacility
    domain_of:
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
  food_prod_char:
    name: food_prod_char
    description: Descriptors of the food production system such as wild caught, free-range,
      organic, free-range, industrial, dairy, beef
    title: food production characteristics
    examples:
    - value: wild caught
    from_schema: https://w3id.org/mixs
    keywords:
    - food
    - production
    slot_uri: MIXS:0001136
    multivalued: true
    alias: food_prod_char
    owner: FoodFoodProductionFacility
    domain_of:
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    range: string
  prod_label_claims:
    name: prod_label_claims
    description: Labeling claims containing descriptors such as wild caught, free-range,
      organic, free-range, industrial, hormone-free, antibiotic free, cage free. Can
      include more than one term, separated by ";"
    title: production labeling claims
    examples:
    - value: free range
    from_schema: https://w3id.org/mixs
    keywords:
    - production
    slot_uri: MIXS:prod_label_claims
    multivalued: true
    alias: prod_label_claims
    owner: FoodFoodProductionFacility
    domain_of:
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    range: string
  food_name_status:
    name: food_name_status
    description: A datum indicating that use of a food product name is regulated in
      some legal jurisdiction. This field accepts terms listed under food product
      name legal status (http://purl.obolibrary.org/obo/FOODON_03530087)
    title: food product name legal status
    examples:
    - value: protected geographic indication [FOODON:03530256]
    from_schema: https://w3id.org/mixs
    keywords:
    - food
    - product
    - status
    slot_uri: MIXS:0001206
    alias: food_name_status
    owner: FoodFoodProductionFacility
    domain_of:
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
    pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$
    structured_pattern:
      syntax: ^{termLabel} \[{termID}\]$
      interpolated: true
      partial_match: true
  food_preserv_proc:
    name: food_preserv_proc
    annotations:
      Expected_value:
        tag: Expected_value
        value: FOODON:03470107
    description: The methods contributing to the prevention or retardation of microbial,
      enzymatic or oxidative spoilage and thus to the extension of shelf life. This
      field accepts terms listed under food preservation process (http://purl.obolibrary.org/obo/FOODON_03470107)
    title: food preservation process
    examples:
    - value: food slow freezing [FOODON:03470128]
    from_schema: https://w3id.org/mixs
    keywords:
    - food
    - process
    string_serialization: '{text}|{termLabel} [{termID}]'
    slot_uri: MIXS:0001135
    multivalued: true
    alias: food_preserv_proc
    owner: FoodFoodProductionFacility
    domain_of:
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
  food_cooking_proc:
    name: food_cooking_proc
    annotations:
      Expected_value:
        tag: Expected_value
        value: FOODON:03450002
    description: The transformation of raw food by the application of heat. This field
      accepts terms listed under food cooking (http://purl.obolibrary.org/obo/FOODON_03450002)
    title: food cooking process
    examples:
    - value: food blanching [FOODON:03470175]
    from_schema: https://w3id.org/mixs
    keywords:
    - food
    - process
    string_serialization: '{text}|{termLabel} [{termID}]'
    slot_uri: MIXS:0001202
    multivalued: true
    alias: food_cooking_proc
    owner: FoodFoodProductionFacility
    domain_of:
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
  food_treat_proc:
    name: food_treat_proc
    annotations:
      Expected_value:
        tag: Expected_value
        value: FOODON:03460111
    description: Used to specifically characterize a food product based on the treatment
      or processes applied to the product or any indexed ingredient. The processes
      include adding, substituting or removing components or modifying the food or
      component, e.g., through fermentation. Multiple values can be assigned. This
      fields accepts terms listed under food treatment process (http://purl.obolibrary.org/obo/FOODON_03460111)
    title: food treatment process
    examples:
    - value: gluten removal process [FOODON:03460750]
    from_schema: https://w3id.org/mixs
    keywords:
    - food
    - process
    - treatment
    string_serialization: '{text}|{termLabel} [{termID}]'
    slot_uri: MIXS:0001140
    multivalued: true
    alias: food_treat_proc
    owner: FoodFoodProductionFacility
    domain_of:
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
  food_contain_wrap:
    name: food_contain_wrap
    annotations:
      Expected_value:
        tag: Expected_value
        value: FOODON:03490100
    description: Type of container or wrapping defined by the main container material,
      the container form, and the material of the liner lids or ends. Also type of
      container or wrapping by form; prefer description by material first, then by
      form. This field accepts terms listed under food container or wrapping (http://purl.obolibrary.org/obo/FOODON_03490100)
    title: food container or wrapping
    examples:
    - value: Plastic shrink-pack [FOODON:03490137]
    from_schema: https://w3id.org/mixs
    keywords:
    - food
    string_serialization: '{text}|{termLabel} [{termID}]'
    slot_uri: MIXS:0001132
    alias: food_contain_wrap
    owner: FoodFoodProductionFacility
    domain_of:
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
  food_pack_capacity:
    name: food_pack_capacity
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: grams
    description: The maximum number of product units within a package
    title: food package capacity
    examples:
    - value: 454 grams
    from_schema: https://w3id.org/mixs
    keywords:
    - food
    - package
    slot_uri: MIXS:0001208
    alias: food_pack_capacity
    owner: FoodFoodProductionFacility
    domain_of:
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  food_pack_medium:
    name: food_pack_medium
    description: The medium in which the food is packed for preservation and handling
      or the medium surrounding homemade foods, e.g., peaches cooked in sugar syrup.
      The packing medium may provide a controlled environment for the food. It may
      also serve to improve palatability and consumer appeal.  This includes edible
      packing media (e.g. fruit juice), gas other than air (e.g. carbon dioxide),
      vacuum packed, or packed with aerosol propellant. This field accepts terms under
      food packing medium (http://purl.obolibrary.org/obo/FOODON_03480020). Multiple
      terms may apply and can be separated by pipes
    title: food packing medium
    examples:
    - value: vacuum-packed [FOODON:03480027]
    from_schema: https://w3id.org/mixs
    string_serialization: '{text}|{termLabel} [{termID}]'
    slot_uri: MIXS:0001134
    multivalued: true
    alias: food_pack_medium
    owner: FoodFoodProductionFacility
    domain_of:
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
  food_prior_contact:
    name: food_prior_contact
    annotations:
      Expected_value:
        tag: Expected_value
        value: FOODON:03530077
    description: The material the food contacted (e.g., was processed in) prior to
      packaging. This field accepts terms listed under material of contact prior to
      food packaging (http://purl.obolibrary.org/obo/FOODON_03530077). If the proper
      descriptor is not listed please use text to describe the material of contact
      prior to food packaging
    title: material of contact prior to food packaging
    examples:
    - value: processed in stainless steel container [FOODON:03530081]
    from_schema: https://w3id.org/mixs
    keywords:
    - food
    - material
    - prior
    string_serialization: '{text}|{termLabel} [{termID}]'
    slot_uri: MIXS:0001210
    multivalued: true
    alias: food_prior_contact
    owner: FoodFoodProductionFacility
    domain_of:
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
  food_prod:
    name: food_prod
    description: Descriptors of the food production system or of the agricultural
      environment and growing conditions related to the farm production system, such
      as wild caught, organic, free-range, industrial, dairy, beef,  domestic or cultivated
      food production. This field accepts terms listed under food production (http://purl.obolibrary.org/obo/FOODON_03530206).
      Multiple terms may apply and can be separated by pipes
    title: food production system characteristics
    examples:
    - value: organic plant cultivation [FOODON:03530253]
    from_schema: https://w3id.org/mixs
    keywords:
    - food
    - production
    slot_uri: MIXS:0001211
    multivalued: true
    alias: food_prod
    owner: FoodFoodProductionFacility
    domain_of:
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
    pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$
    structured_pattern:
      syntax: ^{termLabel} \[{termID}\]$
      interpolated: true
      partial_match: true
  food_quality_date:
    name: food_quality_date
    annotations:
      Expected_value:
        tag: Expected_value
        value: enumeration, date
    description: The date recommended for the use of the product while at peak quality,
      this date is not a reflection of safety unless used on infant formula this date
      is not a reflection of safety and is typically labeled on a food product as
      "best if used by," best by," "use by," or "freeze by."
    title: food quality date
    examples:
    - value: best by 2020-05-24
    from_schema: https://w3id.org/mixs
    keywords:
    - date
    - food
    - quality
    string_serialization: '[best by|best if used by|freeze by|use by]; date'
    slot_uri: MIXS:0001178
    alias: food_quality_date
    owner: FoodFoodProductionFacility
    domain_of:
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
  repository_name:
    name: repository_name
    annotations:
      Expected_value:
        tag: Expected_value
        value: Institution
    description: The name of the institution where the sample or DNA extract is held
      or "sample not available" if the sample was used in its entirety for analysis
      or otherwise not retained
    title: repository name
    examples:
    - value: FDA CFSAN Microbiology Laboratories
    from_schema: https://w3id.org/mixs
    string_serialization: '{text}'
    slot_uri: MIXS:0001152
    multivalued: true
    alias: repository_name
    owner: FoodFoodProductionFacility
    domain_of:
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
  intended_consumer:
    name: intended_consumer
    annotations:
      Expected_value:
        tag: Expected_value
        value: FOODON_03510136 or NCBI taxid
    description: Food consumer type, human or animal, for which the food product is
      produced and marketed. This field accepts terms listed under food consumer group
      (http://purl.obolibrary.org/obo/FOODON_03510136) or NCBI taxid
    title: intended consumer
    examples:
    - value: 9606 o rsenior as food consumer [FOODON:03510254]
    from_schema: https://w3id.org/mixs
    keywords:
    - consumer
    string_serialization: '{integer}|{termLabel} [{termID}]'
    slot_uri: MIXS:0001144
    multivalued: true
    alias: intended_consumer
    owner: FoodFoodProductionFacility
    domain_of:
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
  food_pack_integrity:
    name: food_pack_integrity
    annotations:
      Expected_value:
        tag: Expected_value
        value: FOODON:03530218
    description: A term label and term id to describe the state of the packing material
      and text to explain the exact condition.  This field accepts terms listed under
      food packing medium integrity (http://purl.obolibrary.org/obo/FOODON_03530218)
    title: food packing medium integrity
    examples:
    - value: food packing medium compromised [FOODON:00002517]
    from_schema: https://w3id.org/mixs
    keywords:
    - food
    string_serialization: '{text}|{termLabel} [{termID}]'
    slot_uri: MIXS:0001209
    multivalued: true
    alias: food_pack_integrity
    owner: FoodFoodProductionFacility
    domain_of:
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
  misc_param:
    name: misc_param
    annotations:
      Expected_value:
        tag: Expected_value
        value: parameter name;measurement value
    description: Any other measurement performed or parameter collected, that is not
      listed here
    title: miscellaneous parameter
    examples:
    - value: Bicarbonate ion concentration;2075 micromole per kilogram
    from_schema: https://w3id.org/mixs
    keywords:
    - parameter
    string_serialization: '{text};{float} {unit}'
    slot_uri: MIXS:0000752
    multivalued: true
    alias: misc_param
    owner: FoodFoodProductionFacility
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
class_uri: MIXS:0016021