Term: experimental factor (experimental_factor)
Variable aspects of an experiment design that can be used to describe an experiment, or set of experiments, in an increasingly detailed manner. This field accepts ontology terms from Experimental Factor Ontology (EFO) and/or Ontology for Biomedical Investigations (OBI)
URI: MIXS:0000008
Applicable Checklists and Extensions
NOTE: does not include Combinations (of checklists and extensions) that use experimental_factor.
| Name | Description | Checklist/Extension |
|---|---|---|
| MimsMisip | Metagenome or Environmental with SIP | Checklist |
| MimarksCMisip | Marker Sequence-specimen with SIP | Checklist |
| MigsBa | Minimal Information about a Genome Sequence: cultured bacteria/archaea | Checklist |
| MigsEu | Minimal Information about a Genome Sequence: eukaryote | Checklist |
| MigsOrg | Minimal Information about a Genome Sequence: organelle | Checklist |
| MigsPl | Minimal Information about a Genome Sequence: plasmid | Checklist |
| MigsVi | Minimal Information about a Genome Sequence: virus | Checklist |
| Mimag | Minimum Information About a Metagenome-Assembled Genome | Checklist |
| MimarksC | Minimal Information about a Marker Sequence: specimen | Checklist |
| MimarksS | Minimal Information about a Marker Sequence: survey | Checklist |
| Mims | Metagenome or Environmental | Checklist |
| Misag | Minimum Information About a Single Amplified Genome | Checklist |
| Miuvig | Minimum Information About an Uncultivated Virus Genome | Checklist |
| FoodAnimalAndAnimalFeed | A collection of terms appropriate when collecting samples and performing sequ... | Extension |
| FoodFoodProductionFacility | A collection of terms appropriate when collecting samples and performing sequ... | Extension |
| FoodHumanFoods | A collection of terms appropriate when collecting samples and performing sequ... | Extension |
| MimsHostAssociatedAncient | MIxS Data that comply with the Mims checklist, and HostAssociated and Ancient... | - |
| MimsHumanAssociatedAncient | MIxS Data that comply with the Mims checklist, and HumanAssociated and Ancien... | - |
| MimsHumanOralAncient | MIxS Data that comply with the Mims checklist, and HumanOral and Ancient exte... | - |
| MimsHumanGutAncient | MIxS Data that comply with the Mims checklist, and HumanGut and Ancient exten... | - |
| MimsHumanSkinAncient | MIxS Data that comply with the Mims checklist, and HumanSkin and Ancient exte... | - |
| MimsSedimentAncient | MIxS Data that comply with the Mims checklist, and Sediment and Ancient exten... | - |
| MimsSoilAncient | MIxS Data that comply with the Mims checklist, and Soil and Ancient extension... | - |
| MimsPlantAssociatedAncient | MIxS Data that comply with the Mims checklist, and PlantAssociated and Ancien... | - |
Properties
- Range: String
-
Cardinality: *
-
Regex pattern:
^\S+.*\S+ \[[a-zA-Z]{2,}:\d+\]$
Examples
| Value |
|---|
| time series design [EFO:0001779] |
Annotations
- Expected_value: text or EFO and/or OBI
LinkML Source
name: experimental_factor
annotations:
Expected_value:
tag: Expected_value
value: text or EFO and/or OBI
description: Variable aspects of an experiment design that can be used to describe
an experiment, or set of experiments, in an increasingly detailed manner. This field
accepts ontology terms from Experimental Factor Ontology (EFO) and/or Ontology for
Biomedical Investigations (OBI)
title: experimental factor
examples:
- value: time series design [EFO:0001779]
in_subset:
- investigation
from_schema: https://w3id.org/mixs
keywords:
- experimental
- factor
string_serialization: '{termLabel} [{termID}]|{text}'
slot_uri: MIXS:0000008
domain_of:
- MimsMisip
- MimarksCMisip
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
- MimsHostAssociatedAncient
- MimsHumanAssociatedAncient
- MimsHumanOralAncient
- MimsHumanGutAncient
- MimsHumanSkinAncient
- MimsSedimentAncient
- MimsSoilAncient
- MimsPlantAssociatedAncient
range: string
multivalued: true
pattern: ^\S+.*\S+ \[[a-zA-Z]{2,}:\d+\]$