Term: enrichment protocol (enrichment_protocol)

The microbiological workflow or protocol followed to test for the presence or enumeration of the target microbial analyte(s). Please provide a PubMed or DOI reference for published protocols

URI: MIXS:0001177

Applicable Checklists and Extensions

NOTE: does not include Combinations (of checklists and extensions) that use enrichment_protocol.

Name	Description	Checklist/Extension
FoodFoodProductionFacility	A collection of terms appropriate when collecting samples and performing sequ...	Extension
FoodHumanFoods	A collection of terms appropriate when collecting samples and performing sequ...	Extension
FoodFarmEnvironment	A collection of terms appropriate when collecting samples and performing sequ...	Extension
Agriculture	A collection of terms appropriate when sequencing samples obtained in an agri...	Extension
FoodAnimalAndAnimalFeed	A collection of terms appropriate when collecting samples and performing sequ...	Extension

Properties

• Range: String

• Cardinality: 0..1

• Structured pattern: ^{PMID}|{DOI}|{URL}|{text}$

• Regex pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$|([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$

Examples

Value
BAM Chapter 4: Enumeration of Escherichia coli and the Coliform Bacteria

LinkML Source

name: enrichment_protocol
description: The microbiological workflow or protocol followed to test for the presence
  or enumeration of the target microbial analyte(s). Please provide a PubMed or DOI
  reference for published protocols
title: enrichment protocol
examples:
- value: 'BAM Chapter 4: Enumeration of Escherichia coli and the Coliform Bacteria'
from_schema: https://w3id.org/mixs
keywords:
- enrichment
- protocol
slot_uri: MIXS:0001177
alias: enrichment_protocol
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$|([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
  syntax: ^{PMID}|{DOI}|{URL}|{text}$
  interpolated: true
  partial_match: true