Term: spike-in organism count (spikein_count)
Total cell count of any organism (or group of organisms) per gram, volume or area of sample, should include name of organism followed by count. The method that was used for the enumeration (e.g. qPCR, atp, mpn, etc.) should also be provided (example: total prokaryotes; 3.5e7 cells per ml; qPCR)
URI: MIXS:0001335
Applicable Checklists and Extensions
NOTE: does not include Combinations (of checklists and extensions) that use spikein_count.
Name | Description | Checklist/Extension |
---|---|---|
FoodAnimalAndAnimalFeed | A collection of terms appropriate when collecting samples and performing sequ... | Extension |
FoodFarmEnvironment | A collection of terms appropriate when collecting samples and performing sequ... | Extension |
FoodHumanFoods | A collection of terms appropriate when collecting samples and performing sequ... | Extension |
Properties
- Range: String
- Cardinality: 0..1
Examples
Value |
---|
total prokaryotes;3.5e7 colony forming units per milliliter;qPCR |
Annotations
- Expected_value: organism name;measurement value;enumeration
- Preferred_unit: colony forming units per milliliter; colony forming units per gram of dry weight
LinkML Source
name: spikein_count
annotations:
Expected_value:
tag: Expected_value
value: organism name;measurement value;enumeration
Preferred_unit:
tag: Preferred_unit
value: colony forming units per milliliter; colony forming units per gram of dry
weight
description: 'Total cell count of any organism (or group of organisms) per gram, volume
or area of sample, should include name of organism followed by count. The method
that was used for the enumeration (e.g. qPCR, atp, mpn, etc.) should also be provided
(example: total prokaryotes; 3.5e7 cells per ml; qPCR)'
title: spike-in organism count
examples:
- value: total prokaryotes;3.5e7 colony forming units per milliliter;qPCR
from_schema: https://w3id.org/mixs
keywords:
- count
- organism
- spike
string_serialization: '{text};{float} {unit};[ATP|MPN|qPCR|other]'
slot_uri: MIXS:0001335
alias: spikein_count
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodHumanFoods
range: string