Term: spike in organism (spikein_org)
Taxonomic information about the spike-in organism(s). This field accepts terms under organism (http://purl.obolibrary.org/obo/NCIT_C14250). This field also accepts identification numbers from NCBI under https://www.ncbi.nlm.nih.gov/taxonomy. Multiple terms can be separated by pipes
URI: MIXS:0001167
Applicable Checklists and Extensions
NOTE: does not include Combinations (of checklists and extensions) that use spikein_org.
Name | Description | Checklist/Extension |
---|---|---|
FoodAnimalAndAnimalFeed | A collection of terms appropriate when collecting samples and performing sequ... | Extension |
FoodFarmEnvironment | A collection of terms appropriate when collecting samples and performing sequ... | Extension |
FoodHumanFoods | A collection of terms appropriate when collecting samples and performing sequ... | Extension |
Properties
- Range: String
-
Cardinality: *
-
Structured pattern:
^({termLabel} \[{termID}\])|{integer}$
-
Regex pattern:
^(([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\])|[1-9][0-9]*$
Examples
Value |
---|
Listeria monocytogenes [NCIT:C86502] |
LinkML Source
name: spikein_org
description: Taxonomic information about the spike-in organism(s). This field accepts
terms under organism (http://purl.obolibrary.org/obo/NCIT_C14250). This field also
accepts identification numbers from NCBI under https://www.ncbi.nlm.nih.gov/taxonomy.
Multiple terms can be separated by pipes
title: spike in organism
examples:
- value: Listeria monocytogenes [NCIT:C86502]|28901
from_schema: https://w3id.org/mixs
keywords:
- organism
- spike
slot_uri: MIXS:0001167
alias: spikein_org
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodHumanFoods
range: string
multivalued: true
pattern: ^(([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\])|[1-9][0-9]*$
structured_pattern:
syntax: ^({termLabel} \[{termID}\])|{integer}$
interpolated: true
partial_match: true