Term: serovar or serotype (serovar_or_serotype)
A characterization of a cell or microorganism based on the antigenic properties of the molecules on its surface. Indicate the name of a serovar or serotype of interest. This field accepts terms under organism (http://purl.obolibrary.org/obo/NCIT_C14250). This field also accepts identification numbers from NCBI under https://www.ncbi.nlm.nih.gov/taxonomy
URI: MIXS:0001157
Applicable Checklists and Extensions
NOTE: does not include Combinations (of checklists and extensions) that use serovar_or_serotype.
Name | Description | Checklist/Extension |
---|---|---|
FoodHumanFoods | A collection of terms appropriate when collecting samples and performing sequ... | Extension |
FoodAnimalAndAnimalFeed | A collection of terms appropriate when collecting samples and performing sequ... | Extension |
FoodFarmEnvironment | A collection of terms appropriate when collecting samples and performing sequ... | Extension |
Properties
- Range: String
-
Cardinality: *
-
Structured pattern:
^({termLabel} \[{termID}\])|{integer}$
-
Regex pattern:
^(([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\])|[1-9][0-9]*$
Examples
Value |
---|
Escherichia coli strain O157:H7 [NCIT:C86883] |
LinkML Source
name: serovar_or_serotype
description: A characterization of a cell or microorganism based on the antigenic
properties of the molecules on its surface. Indicate the name of a serovar or serotype
of interest. This field accepts terms under organism (http://purl.obolibrary.org/obo/NCIT_C14250).
This field also accepts identification numbers from NCBI under https://www.ncbi.nlm.nih.gov/taxonomy
title: serovar or serotype
examples:
- value: Escherichia coli strain O157:H7 [NCIT:C86883]
from_schema: https://w3id.org/mixs
slot_uri: MIXS:0001157
alias: serovar_or_serotype
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodHumanFoods
range: string
multivalued: true
pattern: ^(([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\])|[1-9][0-9]*$
structured_pattern:
syntax: ^({termLabel} \[{termID}\])|{integer}$
interpolated: true
partial_match: true