Term: description of reads removal (reads_removed)
Specify whether associated data was filtered in some form prior to upload, such as host reads removal. Detailed description of the the data filtering that was carried out should be described in term 'preprocessing of sequencing reads description'.
URI: MIXS:XXXXXXXXX
Applicable Checklists and Extensions
NOTE: does not include Combinations (of checklists and extensions) that use reads_removed.
| Name | Description | Checklist/Extension |
|---|---|---|
| Ancient | A collection of terms appropriate when collecting samples and sequencing samp... | Extension |
| MimsHostAssociatedAncient | MIxS Data that comply with the Mims checklist, and HostAssociated and Ancient... | - |
| MimsHumanAssociatedAncient | MIxS Data that comply with the Mims checklist, and HumanAssociated and Ancien... | - |
| MimsHumanOralAncient | MIxS Data that comply with the Mims checklist, and HumanOral and Ancient exte... | - |
| MimsHumanGutAncient | MIxS Data that comply with the Mims checklist, and HumanGut and Ancient exten... | - |
| MimsHumanSkinAncient | MIxS Data that comply with the Mims checklist, and HumanSkin and Ancient exte... | - |
| MimsSedimentAncient | MIxS Data that comply with the Mims checklist, and Sediment and Ancient exten... | - |
| MimsSoilAncient | MIxS Data that comply with the Mims checklist, and Soil and Ancient extension... | - |
| MimsPlantAssociatedAncient | MIxS Data that comply with the Mims checklist, and PlantAssociated and Ancien... | - |
Properties
- Range: Boolean
- Cardinality: 0..1 recommended
Examples
| Value |
|---|
| no |
| yes |
Annotations
- Expected_value: Whether any sequencing reads were removed from the data files after sequencing
LinkML Source
name: reads_removed
annotations:
Expected_value:
tag: Expected_value
value: Whether any sequencing reads were removed from the data files after sequencing
description: Specify whether associated data was filtered in some form prior to upload,
such as host reads removal. Detailed description of the the data filtering that
was carried out should be described in term 'preprocessing of sequencing reads description'.
title: description of reads removal
examples:
- value: 'no'
- value: 'yes'
in_subset:
- sequencing
from_schema: https://w3id.org/mixs
keywords:
- data analysis
slot_uri: MIXS:XXXXXXXXX
domain_of:
- Ancient
- MimsHostAssociatedAncient
- MimsHumanAssociatedAncient
- MimsHumanOralAncient
- MimsHumanGutAncient
- MimsHumanSkinAncient
- MimsSedimentAncient
- MimsSoilAncient
- MimsPlantAssociatedAncient
range: boolean
required: false
recommended: true
multivalued: false