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Term: capture probe design description (capt_probe_desc)

Description of target enrichment probe designs used (e.g., species included, sequences, type, company). This can include custom kits (please provide a general description and DOI if available) or commercially available kit (provide ID and company).

URI: MIXS:0001397

Applicable Checklists and Extensions

NOTE: does not include Combinations (of checklists and extensions) that use capt_probe_desc.

Name Description Checklist/Extension
Ancient A collection of terms appropriate when collecting samples and sequencing samp... Extension
MimsHostAssociatedAncient MIxS Data that comply with the Mims checklist, and HostAssociated and Ancient... -
MimsHumanAssociatedAncient MIxS Data that comply with the Mims checklist, and HumanAssociated and Ancien... -
MimsHumanOralAncient MIxS Data that comply with the Mims checklist, and HumanOral and Ancient exte... -
MimsHumanGutAncient MIxS Data that comply with the Mims checklist, and HumanGut and Ancient exten... -
MimsHumanSkinAncient MIxS Data that comply with the Mims checklist, and HumanSkin and Ancient exte... -
MimsSedimentAncient MIxS Data that comply with the Mims checklist, and Sediment and Ancient exten... -
MimsSoilAncient MIxS Data that comply with the Mims checklist, and Soil and Ancient extension... -
MimsPlantAssociatedAncient MIxS Data that comply with the Mims checklist, and PlantAssociated and Ancien... -

Properties

  • Range: String
  • Cardinality: *

Examples

Value
Custom probe design (70 bp biotinylated RNA probes) covering 500 full E. Coli genomes; company TE-Science
Commercial RNA baits kit ABC001-EC from company TE-Science, purchased 2020

Annotations

  • Expected_value: Description of probe set used for target enrichment/library selection (a.k.a. capture)

LinkML Source

name: capt_probe_desc
annotations:
  Expected_value:
    tag: Expected_value
    value: Description of probe set used for target enrichment/library selection (a.k.a.
      capture)
description: Description of target enrichment probe designs used (e.g., species included,
  sequences, type, company). This can include custom kits (please provide a general
  description and DOI if available) or commercially available kit (provide ID and
  company).
title: capture probe design description
examples:
- value: Custom probe design (70 bp biotinylated RNA probes) covering 500 full E.
    Coli genomes; company TE-Science
- value: Commercial RNA baits kit ABC001-EC from company TE-Science, purchased 2020
in_subset:
- sequencing
from_schema: https://w3id.org/mixs
keywords:
- library
- enrichment
string_serialization: '{text}'
slot_uri: MIXS:0001397
domain_of:
- Ancient
- MimsHostAssociatedAncient
- MimsHumanAssociatedAncient
- MimsHumanOralAncient
- MimsHumanGutAncient
- MimsHumanSkinAncient
- MimsSedimentAncient
- MimsSoilAncient
- MimsPlantAssociatedAncient
range: string
required: false
recommended: false
multivalued: true