Term: Genomic capture probe source taxonomy IDs (capt_probe_src_taxid)
NCBI taxon ID(s) of all organisms included in the baits of a whole organelle or whole genome-level capture panel. There should be an (ideally) species level taxonomic ID entry for each organism that had sequences included in the design. If whole genera were targeted, you can instead use a single genus level taxonomic ID or that of any relevant higher taxonomic unit.
URI: MIXS:0001396
Applicable Checklists and Extensions
NOTE: does not include Combinations (of checklists and extensions) that use capt_probe_src_taxid.
| Name | Description | Checklist/Extension |
|---|---|---|
| Ancient | A collection of terms appropriate when collecting samples and sequencing samp... | Extension |
| MimsHostAssociatedAncient | MIxS Data that comply with the Mims checklist, and HostAssociated and Ancient... | - |
| MimsHumanAssociatedAncient | MIxS Data that comply with the Mims checklist, and HumanAssociated and Ancien... | - |
| MimsHumanOralAncient | MIxS Data that comply with the Mims checklist, and HumanOral and Ancient exte... | - |
| MimsHumanGutAncient | MIxS Data that comply with the Mims checklist, and HumanGut and Ancient exten... | - |
| MimsHumanSkinAncient | MIxS Data that comply with the Mims checklist, and HumanSkin and Ancient exte... | - |
| MimsSedimentAncient | MIxS Data that comply with the Mims checklist, and Sediment and Ancient exten... | - |
| MimsSoilAncient | MIxS Data that comply with the Mims checklist, and Soil and Ancient extension... | - |
| MimsPlantAssociatedAncient | MIxS Data that comply with the Mims checklist, and PlantAssociated and Ancien... | - |
Properties
- Range: Integer
- Cardinality: *
Examples
| Value |
|---|
| 9606 |
| 632 |
| 9789 |
Annotations
- Expected_value: Taxonomic IDs corresponding to organism(s) included in target enrichment (a.k.a. capture) probe design
LinkML Source
name: capt_probe_src_taxid
annotations:
Expected_value:
tag: Expected_value
value: Taxonomic IDs corresponding to organism(s) included in target enrichment
(a.k.a. capture) probe design
description: NCBI taxon ID(s) of all organisms included in the baits of a whole organelle
or whole genome-level capture panel. There should be an (ideally) species level
taxonomic ID entry for each organism that had sequences included in the design.
If whole genera were targeted, you can instead use a single genus level taxonomic
ID or that of any relevant higher taxonomic unit.
title: Genomic capture probe source taxonomy IDs
examples:
- value: '9606'
- value: '632'
- value: '9789'
in_subset:
- sequencing
from_schema: https://w3id.org/mixs
keywords:
- sequencing
- library
- enrichment
- capture
slot_uri: MIXS:0001396
domain_of:
- Ancient
- MimsHostAssociatedAncient
- MimsHumanAssociatedAncient
- MimsHumanOralAncient
- MimsHumanGutAncient
- MimsHumanSkinAncient
- MimsSedimentAncient
- MimsSoilAncient
- MimsPlantAssociatedAncient
range: integer
required: false
recommended: false
multivalued: true