Term: library generation technique (lib_gener_technique)
The technique used to generate the library, i.e., amplicon, enriched, or shotgun. An amplicon library is a library that has been amplified to target a single specific region of a genome (e.g. a specific gene). An enriched library is a library that has had a particular genome or multiple genomic regions/positions 'captured' or enriched typically via baits/probes. A shotgun library has undergone no type of targeted amplification/enrichment for a particular genomic region or genome, i.e., random sequencing of any nucleic acid molecule contained in a genomic library.
URI: MIXS:0001392
Applicable Checklists and Extensions
NOTE: does not include Combinations (of checklists and extensions) that use lib_gener_technique.
| Name | Description | Checklist/Extension |
|---|---|---|
| Ancient | A collection of terms appropriate when collecting samples and sequencing samp... | Extension |
| MimsHostAssociatedAncient | MIxS Data that comply with the Mims checklist, and HostAssociated and Ancient... | - |
| MimsHumanAssociatedAncient | MIxS Data that comply with the Mims checklist, and HumanAssociated and Ancien... | - |
| MimsHumanOralAncient | MIxS Data that comply with the Mims checklist, and HumanOral and Ancient exte... | - |
| MimsHumanGutAncient | MIxS Data that comply with the Mims checklist, and HumanGut and Ancient exten... | - |
| MimsHumanSkinAncient | MIxS Data that comply with the Mims checklist, and HumanSkin and Ancient exte... | - |
| MimsSedimentAncient | MIxS Data that comply with the Mims checklist, and Sediment and Ancient exten... | - |
| MimsSoilAncient | MIxS Data that comply with the Mims checklist, and Soil and Ancient extension... | - |
| MimsPlantAssociatedAncient | MIxS Data that comply with the Mims checklist, and PlantAssociated and Ancien... | - |
Properties
- Range: LibTypeEnum
- Cardinality: 0..1 recommended
Examples
| Value |
|---|
| shotgun |
| amplicon |
| enriched |
LinkML Source
name: lib_gener_technique
description: The technique used to generate the library, i.e., amplicon, enriched,
or shotgun. An amplicon library is a library that has been amplified to target a
single specific region of a genome (e.g. a specific gene). An enriched library is
a library that has had a particular genome or multiple genomic regions/positions
'captured' or enriched typically via baits/probes. A shotgun library has undergone
no type of targeted amplification/enrichment for a particular genomic region or
genome, i.e., random sequencing of any nucleic acid molecule contained in a genomic
library.
title: library generation technique
examples:
- value: shotgun
- value: amplicon
- value: enriched
in_subset:
- sequencing
from_schema: https://w3id.org/mixs
keywords:
- library
- preparation
slot_uri: MIXS:0001392
domain_of:
- Ancient
- MimsHostAssociatedAncient
- MimsHumanAssociatedAncient
- MimsHumanOralAncient
- MimsHumanGutAncient
- MimsHumanSkinAncient
- MimsSedimentAncient
- MimsSoilAncient
- MimsPlantAssociatedAncient
range: LibTypeEnum
required: false
recommended: true