Term: description of library multiplex identifiers or indexing configuration (lib_mid_desc)
Index/barcode/primer configuration used during library building for sequencing. This includes information such as the number, type and location of indexes, the index/primer kit/list, or if 'inline' barcodes or UMIs were ligated directly onto the template molecules.
URI: MIXS:0001388
Applicable Checklists and Extensions
NOTE: does not include Combinations (of checklists and extensions) that use lib_mid_desc.
| Name | Description | Checklist/Extension |
|---|---|---|
| Ancient | A collection of terms appropriate when collecting samples and sequencing samp... | Extension |
| MimsHostAssociatedAncient | MIxS Data that comply with the Mims checklist, and HostAssociated and Ancient... | - |
| MimsHumanAssociatedAncient | MIxS Data that comply with the Mims checklist, and HumanAssociated and Ancien... | - |
| MimsHumanOralAncient | MIxS Data that comply with the Mims checklist, and HumanOral and Ancient exte... | - |
| MimsHumanGutAncient | MIxS Data that comply with the Mims checklist, and HumanGut and Ancient exten... | - |
| MimsHumanSkinAncient | MIxS Data that comply with the Mims checklist, and HumanSkin and Ancient exte... | - |
| MimsSedimentAncient | MIxS Data that comply with the Mims checklist, and Sediment and Ancient exten... | - |
| MimsSoilAncient | MIxS Data that comply with the Mims checklist, and Soil and Ancient extension... | - |
| MimsPlantAssociatedAncient | MIxS Data that comply with the Mims checklist, and PlantAssociated and Ancien... | - |
Properties
- Range: String
- Cardinality: * recommended
Examples
| Value |
|---|
| dual index with single internal barcode. |
| UDI index sequences. |
Annotations
- Expected_value: Description of the indexing configuration of the library
LinkML Source
name: lib_mid_desc
annotations:
Expected_value:
tag: Expected_value
value: Description of the indexing configuration of the library
description: Index/barcode/primer configuration used during library building for sequencing.
This includes information such as the number, type and location of indexes, the
index/primer kit/list, or if 'inline' barcodes or UMIs were ligated directly onto
the template molecules.
title: description of library multiplex identifiers or indexing configuration
examples:
- value: dual index with single internal barcode.
- value: UDI index sequences.
in_subset:
- sequencing
from_schema: https://w3id.org/mixs
keywords:
- library
- preparation
string_serialization: '{text}'
slot_uri: MIXS:0001388
domain_of:
- Ancient
- MimsHostAssociatedAncient
- MimsHumanAssociatedAncient
- MimsHumanOralAncient
- MimsHumanGutAncient
- MimsHumanSkinAncient
- MimsSedimentAncient
- MimsSoilAncient
- MimsPlantAssociatedAncient
range: string
required: false
recommended: true
multivalued: true