Term: damage treatment type (damage_treatment)
Indication of whether characteristic ancient DNA damage has been altered or removed from a DNA extract in a laboratory. If damage has been removed, but whether it was fully or partially removed is unknown (e.g. with UDG treatment) - specify 'other', and describe known information in sop_experimental and related free text descriptive terms.
URI: MIXS:0001385
Applicable Checklists and Extensions
NOTE: does not include Combinations (of checklists and extensions) that use damage_treatment.
| Name | Description | Checklist/Extension |
|---|---|---|
| Ancient | A collection of terms appropriate when collecting samples and sequencing samp... | Extension |
| MimsHostAssociatedAncient | MIxS Data that comply with the Mims checklist, and HostAssociated and Ancient... | - |
| MimsHumanAssociatedAncient | MIxS Data that comply with the Mims checklist, and HumanAssociated and Ancien... | - |
| MimsHumanOralAncient | MIxS Data that comply with the Mims checklist, and HumanOral and Ancient exte... | - |
| MimsHumanGutAncient | MIxS Data that comply with the Mims checklist, and HumanGut and Ancient exten... | - |
| MimsHumanSkinAncient | MIxS Data that comply with the Mims checklist, and HumanSkin and Ancient exte... | - |
| MimsSedimentAncient | MIxS Data that comply with the Mims checklist, and Sediment and Ancient exten... | - |
| MimsSoilAncient | MIxS Data that comply with the Mims checklist, and Soil and Ancient extension... | - |
| MimsPlantAssociatedAncient | MIxS Data that comply with the Mims checklist, and PlantAssociated and Ancien... | - |
Properties
- Range: DamageTreatmentEnum
- Cardinality: 1 recommended
Examples
| Value |
|---|
| none |
| partial-removal |
Annotations
- Expected_value: enumeration
LinkML Source
name: damage_treatment
annotations:
Expected_value:
tag: Expected_value
value: enumeration
description: Indication of whether characteristic ancient DNA damage has been altered
or removed from a DNA extract in a laboratory. If damage has been removed, but whether
it was fully or partially removed is unknown (e.g. with UDG treatment) - specify
'other', and describe known information in `sop_experimental` and related free text
descriptive terms.
title: damage treatment type
examples:
- value: none
- value: partial-removal
in_subset:
- sequencing
from_schema: https://w3id.org/mixs
keywords:
- ancient
slot_uri: MIXS:0001385
domain_of:
- Ancient
- MimsHostAssociatedAncient
- MimsHumanAssociatedAncient
- MimsHumanOralAncient
- MimsHumanGutAncient
- MimsHumanSkinAncient
- MimsSedimentAncient
- MimsSoilAncient
- MimsPlantAssociatedAncient
range: DamageTreatmentEnum
required: true
recommended: true
multivalued: false