Term: broad-scale past environmental context (past_env_broad)

Report information about the general ancient broad environmental system that the sample or specimen existed or lived within, as it was at the time of deposition or burial (e.g. in the desert or a forest). This should not describe the environment as it is today (e.g. farmland), but specifically the state as it was in the past (i.e. the palaeo- or (pre)historical ecosystem). Compared to env_broad_scale which is taken from direct observation, the information about the past environment will normally be derived from inference from archaeological, palaeontological, geological, or other scientific methods. We recommend using subclasses of EnvO s biome class: http://purl.obolibrary.org/obo/ENVO_00000428. EnvO documentation about how to use the field for present day equivalents: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS\""

URI: MIXS:0001360

Applicable Checklists and Extensions

NOTE: does not include Combinations (of checklists and extensions) that use past_env_broad.

Name	Description	Checklist/Extension
Ancient	A collection of terms appropriate when collecting samples and sequencing samp...	Extension
MimsHostAssociatedAncient	MIxS Data that comply with the Mims checklist, and HostAssociated and Ancient...	-
MimsHumanAssociatedAncient	MIxS Data that comply with the Mims checklist, and HumanAssociated and Ancien...	-
MimsHumanOralAncient	MIxS Data that comply with the Mims checklist, and HumanOral and Ancient exte...	-
MimsHumanGutAncient	MIxS Data that comply with the Mims checklist, and HumanGut and Ancient exten...	-
MimsHumanSkinAncient	MIxS Data that comply with the Mims checklist, and HumanSkin and Ancient exte...	-
MimsSedimentAncient	MIxS Data that comply with the Mims checklist, and Sediment and Ancient exten...	-
MimsSoilAncient	MIxS Data that comply with the Mims checklist, and Soil and Ancient extension...	-
MimsPlantAssociatedAncient	MIxS Data that comply with the Mims checklist, and PlantAssociated and Ancien...	-

Properties

• Range: String

• Cardinality: 0..1 recommended

• Structured pattern: ^{termLabel} \[{termID}\]$

• Regex pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$

Examples

Value
dessert biome [ENVO:01000247]

LinkML Source

name: past_env_broad
description: 'Report information about the general ancient broad environmental system
  that the sample or specimen existed or lived within, as it was at the time of deposition
  or burial (e.g. in the desert or a forest). This should not describe the environment
  as it is today (e.g. farmland), but specifically the state as it was in the past
  (i.e. the palaeo- or (pre)historical ecosystem). Compared to `env_broad_scale` which
  is taken from direct observation, the information about the past environment will
  normally be derived from inference from archaeological, palaeontological, geological,
  or other scientific methods. We recommend using subclasses of EnvO s biome class:  http://purl.obolibrary.org/obo/ENVO_00000428.
  EnvO documentation about how to use the field for present day equivalents: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS\""'
title: broad-scale past environmental context
examples:
- value: dessert biome [ENVO:01000247]
in_subset:
- environment
from_schema: https://w3id.org/mixs
keywords:
- context
- environmental
- ancient
slot_uri: MIXS:0001360
domain_of:
- Ancient
- MimsHostAssociatedAncient
- MimsHumanAssociatedAncient
- MimsHumanOralAncient
- MimsHumanGutAncient
- MimsHumanSkinAncient
- MimsSedimentAncient
- MimsSoilAncient
- MimsPlantAssociatedAncient
range: string
required: false
recommended: true
pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$
structured_pattern:
  syntax: ^{termLabel} \[{termID}\]$
  interpolated: true
  partial_match: true