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Term: original site location (orig_site_loc)

The original geographical origin of the sample, when sampled outside its original natural environment (e.g. sampled in a museum collection), as defined by the country or sea name followed by specific region name. Country or sea names should be chosen from the INSDC country list (http://insdc.org/country.html), or the GAZ ontology (http://purl.bioontology.org/ontology/GAZ).

URI: MIXS:0001357

Applicable Checklists and Extensions

NOTE: does not include Combinations (of checklists and extensions) that use orig_site_loc.

Name Description Checklist/Extension
Ancient A collection of terms appropriate when collecting samples and sequencing samp... Extension
MimsHostAssociatedAncient MIxS Data that comply with the Mims checklist, and HostAssociated and Ancient... -
MimsHumanAssociatedAncient MIxS Data that comply with the Mims checklist, and HumanAssociated and Ancien... -
MimsHumanOralAncient MIxS Data that comply with the Mims checklist, and HumanOral and Ancient exte... -
MimsHumanGutAncient MIxS Data that comply with the Mims checklist, and HumanGut and Ancient exten... -
MimsHumanSkinAncient MIxS Data that comply with the Mims checklist, and HumanSkin and Ancient exte... -
MimsSedimentAncient MIxS Data that comply with the Mims checklist, and Sediment and Ancient exten... -
MimsSoilAncient MIxS Data that comply with the Mims checklist, and Soil and Ancient extension... -
MimsPlantAssociatedAncient MIxS Data that comply with the Mims checklist, and PlantAssociated and Ancien... -

Properties

  • Range: String

  • Cardinality: 0..1

  • Structured pattern: ^{country}: {region}, {specific_location}$

Examples

Value
South Africa: Western Cape
Germany: Baden-Württemberg, Geißenklösterle Cave
Northern Italy: Lombardy

Annotations

  • Expected_value: Name of original geographic origin of the sample

LinkML Source

name: orig_site_loc
annotations:
  Expected_value:
    tag: Expected_value
    value: Name of original geographic origin of the sample
description: The original geographical origin of the sample, when sampled outside
  its original natural environment (e.g. sampled in a museum collection), as defined
  by the country or sea name followed by specific region name.  Country or sea names
  should be chosen from the INSDC country list (http://insdc.org/country.html), or
  the GAZ ontology (http://purl.bioontology.org/ontology/GAZ).
title: original site location
examples:
- value: 'South Africa: Western Cape'
- value: 'Germany: Baden-Württemberg, Geißenklösterle Cave'
- value: 'Northern Italy: Lombardy'
in_subset:
- environment
from_schema: https://w3id.org/mixs
keywords:
- location
- site
slot_uri: MIXS:0001357
domain_of:
- Ancient
- MimsHostAssociatedAncient
- MimsHumanAssociatedAncient
- MimsHumanOralAncient
- MimsHumanGutAncient
- MimsHumanSkinAncient
- MimsSedimentAncient
- MimsSoilAncient
- MimsPlantAssociatedAncient
range: string
required: false
recommended: false
multivalued: false
structured_pattern:
  syntax: '^{country}: {region}, {specific_location}$'