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Term: taxonomy ID of DNA sample (samp_taxon_id)

NCBI taxon id of the sample. Maybe be a single taxon or mixed taxa sample. Use 'synthetic metagenome for mock community/positive controls, or 'blank sample' for negative controls

URI: MIXS:0001320

Applicable Checklists and Extensions

NOTE: does not include Combinations (of checklists and extensions) that use samp_taxon_id.

Name Description Checklist/Extension
Mimag Minimum Information About a Metagenome-Assembled Genome Checklist
MigsEu Minimal Information about a Genome Sequence: eukaryote Checklist
MigsVi Minimal Information about a Genome Sequence: virus Checklist
Mims Metagenome or Environmental Checklist
MigsBa Minimal Information about a Genome Sequence: cultured bacteria/archaea Checklist
MimarksS Minimal Information about a Marker Specimen: survey Checklist
Misag Minimum Information About a Single Amplified Genome Checklist
Miuvig Minimum Information About an Uncultivated Virus Genome Checklist
MimarksC Minimal Information about a Marker Specimen: specimen Checklist
MigsPl Minimal Information about a Genome Sequence: plasmid Checklist
MigsOrg Minimal Information about a Genome Sequence: organelle Checklist

Properties

  • Range: String

  • Cardinality: 1..1

  • Structured pattern: ^{text} \[{NCBItaxon_id}\]$

  • Regex pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[NCBITaxon:\d+\]$

Examples

Value
Gut Metagenome [NCBITaxon:749906]

LinkML Source

name: samp_taxon_id
description: NCBI taxon id of the sample.  Maybe be a single taxon or mixed taxa sample.
  Use 'synthetic metagenome  for mock community/positive controls, or 'blank sample'
  for negative controls
title: taxonomy ID of DNA sample
examples:
- value: Gut Metagenome [NCBITaxon:749906]
in_subset:
- investigation
from_schema: https://w3id.org/mixs
keywords:
- dna
- identifier
- sample
- taxon
slot_uri: MIXS:0001320
alias: samp_taxon_id
domain_of:
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
range: string
required: true
pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[NCBITaxon:\d+\]$
structured_pattern:
  syntax: ^{text} \[{NCBItaxon_id}\]$
  interpolated: true
  partial_match: true