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Term: storage conditions (store_cond)

Explain how and for how long the sample was stored before DNA extraction (for example, fresh/frozen/other). Include factors that may influence nucleic acid recovery or library construction. For example, specify temperature, humidity, presence of microbial overgrowth etc..

URI: MIXS:0000327

Applicable Checklists and Extensions

NOTE: does not include Combinations (of checklists and extensions) that use store_cond.

Name Description Checklist/Extension
Agriculture A collection of terms appropriate when sequencing samples obtained in an agri... Extension
Ancient A collection of terms appropriate when collecting samples and sequencing samp... Extension
Soil A collection of terms appropriate when collecting samples and sequencing samp... Extension
MimsHostAssociatedAncient MIxS Data that comply with the Mims checklist, and HostAssociated and Ancient... -
MimsHumanAssociatedAncient MIxS Data that comply with the Mims checklist, and HumanAssociated and Ancien... -
MimsHumanOralAncient MIxS Data that comply with the Mims checklist, and HumanOral and Ancient exte... -
MimsHumanGutAncient MIxS Data that comply with the Mims checklist, and HumanGut and Ancient exten... -
MimsHumanSkinAncient MIxS Data that comply with the Mims checklist, and HumanSkin and Ancient exte... -
MimsSedimentAncient MIxS Data that comply with the Mims checklist, and Sediment and Ancient exten... -
MimsSoilAncient MIxS Data that comply with the Mims checklist, and Soil and Ancient extension... -
MimsPlantAssociatedAncient MIxS Data that comply with the Mims checklist, and PlantAssociated and Ancien... -

Properties

  • Range: String

  • Cardinality: 0..1

  • Structured pattern: ^{storage_condition_type};{duration}$

Examples

Value
-20 degree Celsius freezer;P2Y10D
climate-controlled
Mould growth in storage box observed
Stored at -20oC until 2025-05-15
Stored in the museum from 1924 to 2021

LinkML Source

name: store_cond
description: Explain how and for how long the sample was stored before DNA extraction
  (for example, fresh/frozen/other). Include factors that may influence nucleic acid
  recovery or library construction. For example, specify temperature, humidity, presence
  of microbial overgrowth etc..
title: storage conditions
examples:
- value: -20 degree Celsius freezer;P2Y10D
- value: climate-controlled
- value: Mould growth in storage box observed
- value: Stored at -20oC until 2025-05-15
- value: Stored in the museum from 1924 to 2021
from_schema: https://w3id.org/mixs
keywords:
- condition
- storage
slot_uri: MIXS:0000327
domain_of:
- Agriculture
- Ancient
- Soil
- MimsHostAssociatedAncient
- MimsHumanAssociatedAncient
- MimsHumanOralAncient
- MimsHumanGutAncient
- MimsHumanSkinAncient
- MimsSedimentAncient
- MimsSoilAncient
- MimsPlantAssociatedAncient
range: string
structured_pattern:
  syntax: ^{storage_condition_type};{duration}$