Term: tRNA extraction software (trna_ext_software)

Tools used for tRNA identification

URI: MIXS:0000068

Applicable Checklists and Extensions

NOTE: does not include Combinations (of checklists and extensions) that use trna_ext_software.

Name	Description	Checklist/Extension
Mimag	Minimum Information About a Metagenome-Assembled Genome	Checklist
Miuvig	Minimum Information About an Uncultivated Virus Genome	Checklist
Misag	Minimum Information About a Single Amplified Genome	Checklist

Properties

• Range: String

• Cardinality: 0..1

• Structured pattern: ^{software};{version};{parameters}$

• Regex pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$

Examples

Value
infernal;v2;default parameters

LinkML Source

name: trna_ext_software
description: Tools used for tRNA identification
title: tRNA extraction software
examples:
- value: infernal;v2;default parameters
in_subset:
- sequencing
from_schema: https://w3id.org/mixs
keywords:
- software
slot_uri: MIXS:0000068
alias: trna_ext_software
domain_of:
- Mimag
- Misag
- Miuvig
range: string
pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
  syntax: ^{software};{version};{parameters}$
  interpolated: true
  partial_match: true