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Term: number of contigs (number_contig)

Total number of contigs in the cleaned/submitted assembly that makes up a given genome, SAG, MAG, or UViG

URI: MIXS:0000060

Applicable Checklists and Extensions

NOTE: does not include Combinations (of checklists and extensions) that use number_contig.

Name Description Checklist/Extension
MigsVi Minimal Information about a Genome Sequence: virus Checklist
MigsOrg Minimal Information about a Genome Sequence: organelle Checklist
Mimag Minimum Information About a Metagenome-Assembled Genome Checklist
Miuvig Minimum Information About an Uncultivated Virus Genome Checklist
MigsPl Minimal Information about a Genome Sequence: plasmid Checklist
Mims Metagenome or Environmental Checklist
Misag Minimum Information About a Single Amplified Genome Checklist
MigsEu Minimal Information about a Genome Sequence: eukaryote Checklist
MigsBa Minimal Information about a Genome Sequence: cultured bacteria/archaea Checklist

Properties

Examples

Value
40

LinkML Source

name: number_contig
description: Total number of contigs in the cleaned/submitted assembly that makes
  up a given genome, SAG, MAG, or UViG
title: number of contigs
examples:
- value: '40'
in_subset:
- sequencing
from_schema: https://w3id.org/mixs
keywords:
- number
slot_uri: MIXS:0000060
alias: number_contig
domain_of:
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- Mims
- Misag
- Miuvig
range: integer