Term: local environmental context (env_local_scale)

Report the entity or entities which are in the sample or specimen s local vicinity and which you believe have significant causal influences on your sample or specimen. We recommend using EnvO terms which are of smaller spatial grain than your entry for env_broad_scale. Terms, such as anatomical sites, from other OBO Library ontologies which interoperate with EnvO (e.g. UBERON) are accepted in this field. EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS

URI: MIXS:0000013

Applicable Checklists and Extensions

NOTE: does not include Combinations (of checklists and extensions) that use env_local_scale.

Name	Description	Checklist/Extension
Mimag	Minimum Information About a Metagenome-Assembled Genome	Checklist
MigsEu	Minimal Information about a Genome Sequence: eukaryote	Checklist
MigsVi	Minimal Information about a Genome Sequence: virus	Checklist
Mims	Metagenome or Environmental	Checklist
MigsBa	Minimal Information about a Genome Sequence: cultured bacteria/archaea	Checklist
MimarksS	Minimal Information about a Marker Specimen: survey	Checklist
Misag	Minimum Information About a Single Amplified Genome	Checklist
Miuvig	Minimum Information About an Uncultivated Virus Genome	Checklist
MimarksC	Minimal Information about a Marker Specimen: specimen	Checklist
MigsPl	Minimal Information about a Genome Sequence: plasmid	Checklist
MigsOrg	Minimal Information about a Genome Sequence: organelle	Checklist

Properties

• Range: String
• Cardinality: 1..1

Examples

Value
hillside [ENVO:01000333]

Annotations

• Expected_value: Environmental entities having causal influences upon the entity at time of sampling

LinkML Source

name: env_local_scale
annotations:
  Expected_value:
    tag: Expected_value
    value: Environmental entities having causal influences upon the entity at time
      of sampling
description: 'Report the entity or entities which are in the sample or specimen s
  local vicinity and which you believe have significant causal influences on your
  sample or specimen. We recommend using EnvO terms which are of smaller spatial grain
  than your entry for env_broad_scale. Terms, such as anatomical sites, from other
  OBO Library ontologies which interoperate with EnvO (e.g. UBERON) are accepted in
  this field. EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS'
title: local environmental context
examples:
- value: hillside [ENVO:01000333]
in_subset:
- environment
from_schema: https://w3id.org/mixs
keywords:
- context
- environmental
string_serialization: '{termLabel} [{termID}]'
slot_uri: MIXS:0000013
alias: env_local_scale
domain_of:
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
range: string
required: true