Term: local environmental context (env_local_scale)
Report the entity or entities which are in the sample or specimen s local vicinity and which you believe have significant causal influences on your sample or specimen. We recommend using EnvO terms which are of smaller spatial grain than your entry for env_broad_scale. Terms, such as anatomical sites, from other OBO Library ontologies which interoperate with EnvO (e.g. UBERON) are accepted in this field. EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS
URI: MIXS:0000013
Applicable Checklists and Extensions
NOTE: does not include Combinations (of checklists and extensions) that use env_local_scale.
Name | Description | Checklist/Extension |
---|---|---|
MigsVi | Minimal Information about a Genome Sequence: virus | Checklist |
MigsOrg | Minimal Information about a Genome Sequence: organelle | Checklist |
Mimag | Minimum Information About a Metagenome-Assembled Genome | Checklist |
MimarksS | Minimal Information about a Marker Sequence: survey | Checklist |
Miuvig | Minimum Information About an Uncultivated Virus Genome | Checklist |
MigsPl | Minimal Information about a Genome Sequence: plasmid | Checklist |
Mims | Metagenome or Environmental | Checklist |
Misag | Minimum Information About a Single Amplified Genome | Checklist |
MigsEu | Minimal Information about a Genome Sequence: eukaryote | Checklist |
MigsBa | Minimal Information about a Genome Sequence: cultured bacteria/archaea | Checklist |
MimarksC | Minimal Information about a Marker Sequence: specimen | Checklist |
Properties
- Range: String
-
Cardinality: 1
-
Structured pattern:
^{termLabel} \[{termID}\]$
Examples
Value |
---|
hillside [ENVO:01000333] |
Annotations
- Expected_value: Environmental entities having causal influences upon the entity at time of sampling
LinkML Source
name: env_local_scale
annotations:
Expected_value:
tag: Expected_value
value: Environmental entities having causal influences upon the entity at time
of sampling
description: 'Report the entity or entities which are in the sample or specimen s
local vicinity and which you believe have significant causal influences on your
sample or specimen. We recommend using EnvO terms which are of smaller spatial grain
than your entry for env_broad_scale. Terms, such as anatomical sites, from other
OBO Library ontologies which interoperate with EnvO (e.g. UBERON) are accepted in
this field. EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS'
title: local environmental context
examples:
- value: hillside [ENVO:01000333]
in_subset:
- environment
from_schema: https://w3id.org/mixs
keywords:
- context
- environmental
slot_uri: MIXS:0000013
alias: env_local_scale
domain_of:
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
range: string
required: true
structured_pattern:
syntax: ^{termLabel} \[{termID}\]$
interpolated: true
partial_match: true