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Class: Soil

soil

URI: MIXS:Soil

Inheritance

Slots

Name Cardinality and Range Description Inheritance
lat_lon 0..1
String		 The geographical origin of the sample as defined by latitude and longitude direct
depth 1..1
QuantityValue		 The vertical distance below local surface, e direct
alt 0..1
QuantityValue		 Altitude is a term used to identify heights of objects such as airplanes, spa... direct
elev 1..1
QuantityValue		 Elevation of the sampling site is its height above a fixed reference point, m... direct
temp 0..1
QuantityValue		 Temperature of the sample at the time of sampling direct
geo_loc_name 0..1
String		 The geographical origin of the sample as defined by the country or sea name f... direct
collection_date 0..1
Date		 The time of sampling, either as an instance (single point in time) or interva... direct
env_broad_scale 0..1
String		 Report the major environmental system the sample or specimen came from direct
env_local_scale 0..1
String		 Report the entity or entities which are in the sample or specimen’s local vic... direct
env_medium 0..1
String		 Report the environmental material(s) immediately surrounding the sample or sp... direct
cur_land_use 0..1
CurLandUseEnum		 Present state of sample site direct
cur_vegetation 0..1
String		 Vegetation classification from one or more standard classification systems, o... direct
cur_vegetation_meth 0..1
String		 Reference or method used in vegetation classification direct
previous_land_use 0..1
String		 Previous land use and dates direct
prev_land_use_meth 0..1
String		 Reference or method used in determining previous land use and dates direct
crop_rotation 0..1
String		 Whether or not crop is rotated, and if yes, rotation schedule direct
agrochem_addition 0..*
String		 Addition of fertilizers, pesticides, etc direct
tillage 0..*
TillageEnum		 Note method(s) used for tilling direct
fire 0..1
Date		 Historical and/or physical evidence of fire direct
flooding 0..1
Date		 Historical and/or physical evidence of flooding direct
extreme_event 0..1
Date		 Unusual physical events that may have affected microbial populations direct
soil_horizon 0..1
SoilHorizonEnum		 Specific layer in the land area which measures parallel to the soil surface a... direct
horizon_meth 0..1
String		 Reference or method used in determining the horizon direct
sieving 0..1
String		 Collection design of pooled samples and/or sieve size and amount of sample si... direct
water_content 0..1
QuantityValue		 Water content measurement direct
water_cont_soil_meth 0..1
String		 Reference or method used in determining the water content of soil direct
pool_dna_extracts 0..1
String		 Indicate whether multiple DNA extractions were mixed direct
store_cond 0..1
String		 Explain how and for how long the soil sample was stored before DNA extraction... direct
link_climate_info 0..1
String		 Link to climate resource direct
annual_temp 0..1
QuantityValue		 Mean annual temperature direct
season_temp 0..1
QuantityValue		 Mean seasonal temperature direct
annual_precpt 0..1
QuantityValue		 The average of all annual precipitation values known, or an estimated equival... direct
season_precpt 0..1
QuantityValue		 The average of all seasonal precipitation values known, or an estimated equiv... direct
link_class_info 0..1
String		 Link to digitized soil maps or other soil classification information direct
fao_class 0..1
FaoClassEnum		 Soil classification from the FAO World Reference Database for Soil Resources direct
local_class 0..1
String		 Soil classification based on local soil classification system direct
local_class_meth 0..1
String		 Reference or method used in determining the local soil classification direct
org_nitro 0..1
QuantityValue		 Concentration of organic nitrogen direct
soil_type 0..1
String		 Description of the soil type or classification direct
soil_type_meth 0..1
String		 Reference or method used in determining soil series name or other lower-level... direct
slope_gradient 0..1
QuantityValue		 Commonly called 'slope' direct
slope_aspect 0..1
QuantityValue		 The direction a slope faces direct
profile_position 0..1
ProfilePositionEnum		 Cross-sectional position in the hillslope where sample was collected direct
drainage_class 0..1
DrainageClassEnum		 Drainage classification from a standard system such as the USDA system direct
soil_text_measure 0..1
QuantityValue		 The relative proportion of different grain sizes of mineral particles in a so... direct
soil_texture_meth 0..1
String		 Reference or method used in determining soil texture direct
ph 0..1
Double		 Ph measurement of the sample, or liquid portion of sample, or aqueous phase o... direct
ph_meth 0..1
String		 Reference or method used in determining ph direct
org_matter 0..1
QuantityValue		 Concentration of organic matter direct
tot_org_carb 0..1
QuantityValue		 Definition for soil: total organic carbon content of the soil, definition oth... direct
tot_org_c_meth 0..1
String		 Reference or method used in determining total organic carbon direct
tot_nitro_content 0..1
QuantityValue		 Total nitrogen content of the sample direct
tot_nitro_cont_meth 0..1
String		 Reference or method used in determining the total nitrogen direct
microbial_biomass 0..1
QuantityValue		 The part of the organic matter in the soil that constitutes living microorgan... direct
micro_biomass_meth 0..1
String		 Reference or method used in determining microbial biomass direct
link_addit_analys 0..1
String		 Link to additional analysis results performed on the sample direct
salinity_meth 0..1
String		 Reference or method used in determining salinity direct
heavy_metals 0..*
String		 Heavy metals present in the sequenced sample and their concentrations direct
heavy_metals_meth 0..1
String		 Reference or method used in determining heavy metals direct
al_sat 0..1
QuantityValue		 Aluminum saturation (esp direct
al_sat_meth 0..1
String		 Reference or method used in determining Al saturation direct
misc_param 0..*
String		 Any other measurement performed or parameter collected, that is not listed he... direct

Identifier and Mapping Information

Schema Source

  • from schema: http://w3id.org/mixs

Mappings

Mapping Type Mapped Value
self MIXS:Soil
native MIXS:Soil

LinkML Source

Direct

name: soil
description: soil
from_schema: http://w3id.org/mixs
slots:
- lat_lon
- depth
- alt
- elev
- temp
- geo_loc_name
- collection_date
- env_broad_scale
- env_local_scale
- env_medium
- cur_land_use
- cur_vegetation
- cur_vegetation_meth
- previous_land_use
- prev_land_use_meth
- crop_rotation
- agrochem_addition
- tillage
- fire
- flooding
- extreme_event
- soil_horizon
- horizon_meth
- sieving
- water_content
- water_cont_soil_meth
- pool_dna_extracts
- store_cond
- link_climate_info
- annual_temp
- season_temp
- annual_precpt
- season_precpt
- link_class_info
- fao_class
- local_class
- local_class_meth
- org_nitro
- soil_type
- soil_type_meth
- slope_gradient
- slope_aspect
- profile_position
- drainage_class
- soil_text_measure
- soil_texture_meth
- ph
- ph_meth
- org_matter
- tot_org_carb
- tot_org_c_meth
- tot_nitro_content
- tot_nitro_cont_meth
- microbial_biomass
- micro_biomass_meth
- link_addit_analys
- salinity_meth
- heavy_metals
- heavy_metals_meth
- al_sat
- al_sat_meth
- misc_param
slot_usage:
  samp_name:
    name: samp_name
    required: true
  project_name:
    name: project_name
    required: true
  depth:
    name: depth
    domain_of:
    - agriculture
    - food-farm environment
    - food-food production facility
    - food-animal and animal feed
    - food-human foods
    - symbiont-associated
    - water
    - wastewater_sludge
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - built environment
    - air
    - core
    required: true
  elev:
    name: elev
    domain_of:
    - agriculture
    - food-farm environment
    - food-food production facility
    - food-animal and animal feed
    - food-human foods
    - symbiont-associated
    - water
    - wastewater_sludge
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - built environment
    - air
    - core
    required: true
  cur_land_use:
    name: cur_land_use
    domain_of:
    - agriculture
    - soil
    required: false
  cur_vegetation:
    name: cur_vegetation
    domain_of:
    - agriculture
    - soil
    required: false
  cur_vegetation_meth:
    name: cur_vegetation_meth
    domain_of:
    - agriculture
    - soil
    required: false
  previous_land_use:
    name: previous_land_use
    domain_of:
    - agriculture
    - food-farm environment
    - soil
    required: false
  prev_land_use_meth:
    name: prev_land_use_meth
    domain_of:
    - soil
    required: false
  crop_rotation:
    name: crop_rotation
    domain_of:
    - agriculture
    - food-farm environment
    - soil
    required: false
  agrochem_addition:
    name: agrochem_addition
    domain_of:
    - agriculture
    - soil
    required: false
  tillage:
    name: tillage
    domain_of:
    - agriculture
    - food-farm environment
    - soil
    required: false
  fire:
    name: fire
    domain_of:
    - agriculture
    - soil
    required: false
  flooding:
    name: flooding
    domain_of:
    - agriculture
    - soil
    required: false
  extreme_event:
    name: extreme_event
    domain_of:
    - agriculture
    - soil
    required: false
  soil_horizon:
    name: soil_horizon
    domain_of:
    - agriculture
    - soil
    required: false
  horizon_meth:
    name: horizon_meth
    domain_of:
    - agriculture
    - soil
    required: false
  sieving:
    name: sieving
    domain_of:
    - agriculture
    - soil
    required: false
  water_content:
    name: water_content
    domain_of:
    - soil
    - sediment
    - microbial mat_biofilm
    required: false
  water_cont_soil_meth:
    name: water_cont_soil_meth
    domain_of:
    - soil
    required: false
  samp_vol_we_dna_ext:
    name: samp_vol_we_dna_ext
    required: false
  pool_dna_extracts:
    name: pool_dna_extracts
    domain_of:
    - agriculture
    - food-food production facility
    - food-animal and animal feed
    - food-human foods
    - soil
    required: false
  store_cond:
    name: store_cond
    domain_of:
    - agriculture
    - soil
    required: false
  link_climate_info:
    name: link_climate_info
    domain_of:
    - agriculture
    - soil
    required: false
  annual_temp:
    name: annual_temp
    domain_of:
    - agriculture
    - soil
    required: false
  season_temp:
    name: season_temp
    domain_of:
    - agriculture
    - food-farm environment
    - soil
    required: false
  annual_precpt:
    name: annual_precpt
    domain_of:
    - agriculture
    - soil
    required: false
  season_precpt:
    name: season_precpt
    domain_of:
    - agriculture
    - food-farm environment
    - soil
    required: false
  link_class_info:
    name: link_class_info
    domain_of:
    - agriculture
    - soil
    required: false
  fao_class:
    name: fao_class
    domain_of:
    - agriculture
    - soil
    required: false
  local_class:
    name: local_class
    domain_of:
    - agriculture
    - soil
    required: false
  local_class_meth:
    name: local_class_meth
    domain_of:
    - agriculture
    - soil
    required: false
  org_nitro:
    name: org_nitro
    domain_of:
    - water
    - soil
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    required: false
  temp:
    name: temp
    domain_of:
    - agriculture
    - food-farm environment
    - food-food production facility
    - food-animal and animal feed
    - food-human foods
    - symbiont-associated
    - water
    - wastewater_sludge
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - built environment
    - air
    - core
    required: false
  soil_type:
    name: soil_type
    domain_of:
    - agriculture
    - food-farm environment
    - soil
    required: false
  soil_type_meth:
    name: soil_type_meth
    domain_of:
    - agriculture
    - food-farm environment
    - soil
    required: false
  slope_gradient:
    name: slope_gradient
    domain_of:
    - agriculture
    - soil
    required: false
  slope_aspect:
    name: slope_aspect
    domain_of:
    - agriculture
    - soil
    required: false
  profile_position:
    name: profile_position
    domain_of:
    - agriculture
    - soil
    required: false
  drainage_class:
    name: drainage_class
    domain_of:
    - agriculture
    - soil
    required: false
  soil_text_measure:
    name: soil_text_measure
    domain_of:
    - soil
    required: false
  soil_texture_meth:
    name: soil_texture_meth
    domain_of:
    - food-farm environment
    - soil
    required: false
  ph:
    name: ph
    domain_of:
    - food-farm environment
    - water
    - wastewater_sludge
    - soil
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    required: false
  ph_meth:
    name: ph_meth
    domain_of:
    - agriculture
    - food-farm environment
    - soil
    required: false
  org_matter:
    name: org_matter
    domain_of:
    - water
    - soil
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    required: false
  tot_org_carb:
    name: tot_org_carb
    domain_of:
    - agriculture
    - food-farm environment
    - soil
    - sediment
    - microbial mat_biofilm
    required: false
  tot_org_c_meth:
    name: tot_org_c_meth
    domain_of:
    - agriculture
    - food-farm environment
    - soil
    required: false
  tot_nitro_content:
    name: tot_nitro_content
    domain_of:
    - food-farm environment
    - soil
    - sediment
    - microbial mat_biofilm
    required: false
  tot_nitro_cont_meth:
    name: tot_nitro_cont_meth
    domain_of:
    - food-farm environment
    - soil
    required: false
  microbial_biomass:
    name: microbial_biomass
    domain_of:
    - agriculture
    - soil
    required: false
  micro_biomass_meth:
    name: micro_biomass_meth
    domain_of:
    - soil
    required: false
  link_addit_analys:
    name: link_addit_analys
    domain_of:
    - soil
    required: false
  salinity_meth:
    name: salinity_meth
    domain_of:
    - food-farm environment
    - soil
    required: false
  heavy_metals:
    name: heavy_metals
    domain_of:
    - soil
    required: false
  heavy_metals_meth:
    name: heavy_metals_meth
    domain_of:
    - agriculture
    - soil
    required: false
  al_sat:
    name: al_sat
    domain_of:
    - soil
    required: false
  al_sat_meth:
    name: al_sat_meth
    domain_of:
    - soil
    required: false
  misc_param:
    name: misc_param
    domain_of:
    - agriculture
    - food-farm environment
    - food-food production facility
    - food-animal and animal feed
    - food-human foods
    - symbiont-associated
    - water
    - wastewater_sludge
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    required: false

Induced

name: soil
description: soil
from_schema: http://w3id.org/mixs
slot_usage:
  samp_name:
    name: samp_name
    required: true
  project_name:
    name: project_name
    required: true
  depth:
    name: depth
    domain_of:
    - agriculture
    - food-farm environment
    - food-food production facility
    - food-animal and animal feed
    - food-human foods
    - symbiont-associated
    - water
    - wastewater_sludge
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - built environment
    - air
    - core
    required: true
  elev:
    name: elev
    domain_of:
    - agriculture
    - food-farm environment
    - food-food production facility
    - food-animal and animal feed
    - food-human foods
    - symbiont-associated
    - water
    - wastewater_sludge
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - built environment
    - air
    - core
    required: true
  cur_land_use:
    name: cur_land_use
    domain_of:
    - agriculture
    - soil
    required: false
  cur_vegetation:
    name: cur_vegetation
    domain_of:
    - agriculture
    - soil
    required: false
  cur_vegetation_meth:
    name: cur_vegetation_meth
    domain_of:
    - agriculture
    - soil
    required: false
  previous_land_use:
    name: previous_land_use
    domain_of:
    - agriculture
    - food-farm environment
    - soil
    required: false
  prev_land_use_meth:
    name: prev_land_use_meth
    domain_of:
    - soil
    required: false
  crop_rotation:
    name: crop_rotation
    domain_of:
    - agriculture
    - food-farm environment
    - soil
    required: false
  agrochem_addition:
    name: agrochem_addition
    domain_of:
    - agriculture
    - soil
    required: false
  tillage:
    name: tillage
    domain_of:
    - agriculture
    - food-farm environment
    - soil
    required: false
  fire:
    name: fire
    domain_of:
    - agriculture
    - soil
    required: false
  flooding:
    name: flooding
    domain_of:
    - agriculture
    - soil
    required: false
  extreme_event:
    name: extreme_event
    domain_of:
    - agriculture
    - soil
    required: false
  soil_horizon:
    name: soil_horizon
    domain_of:
    - agriculture
    - soil
    required: false
  horizon_meth:
    name: horizon_meth
    domain_of:
    - agriculture
    - soil
    required: false
  sieving:
    name: sieving
    domain_of:
    - agriculture
    - soil
    required: false
  water_content:
    name: water_content
    domain_of:
    - soil
    - sediment
    - microbial mat_biofilm
    required: false
  water_cont_soil_meth:
    name: water_cont_soil_meth
    domain_of:
    - soil
    required: false
  samp_vol_we_dna_ext:
    name: samp_vol_we_dna_ext
    required: false
  pool_dna_extracts:
    name: pool_dna_extracts
    domain_of:
    - agriculture
    - food-food production facility
    - food-animal and animal feed
    - food-human foods
    - soil
    required: false
  store_cond:
    name: store_cond
    domain_of:
    - agriculture
    - soil
    required: false
  link_climate_info:
    name: link_climate_info
    domain_of:
    - agriculture
    - soil
    required: false
  annual_temp:
    name: annual_temp
    domain_of:
    - agriculture
    - soil
    required: false
  season_temp:
    name: season_temp
    domain_of:
    - agriculture
    - food-farm environment
    - soil
    required: false
  annual_precpt:
    name: annual_precpt
    domain_of:
    - agriculture
    - soil
    required: false
  season_precpt:
    name: season_precpt
    domain_of:
    - agriculture
    - food-farm environment
    - soil
    required: false
  link_class_info:
    name: link_class_info
    domain_of:
    - agriculture
    - soil
    required: false
  fao_class:
    name: fao_class
    domain_of:
    - agriculture
    - soil
    required: false
  local_class:
    name: local_class
    domain_of:
    - agriculture
    - soil
    required: false
  local_class_meth:
    name: local_class_meth
    domain_of:
    - agriculture
    - soil
    required: false
  org_nitro:
    name: org_nitro
    domain_of:
    - water
    - soil
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    required: false
  temp:
    name: temp
    domain_of:
    - agriculture
    - food-farm environment
    - food-food production facility
    - food-animal and animal feed
    - food-human foods
    - symbiont-associated
    - water
    - wastewater_sludge
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - built environment
    - air
    - core
    required: false
  soil_type:
    name: soil_type
    domain_of:
    - agriculture
    - food-farm environment
    - soil
    required: false
  soil_type_meth:
    name: soil_type_meth
    domain_of:
    - agriculture
    - food-farm environment
    - soil
    required: false
  slope_gradient:
    name: slope_gradient
    domain_of:
    - agriculture
    - soil
    required: false
  slope_aspect:
    name: slope_aspect
    domain_of:
    - agriculture
    - soil
    required: false
  profile_position:
    name: profile_position
    domain_of:
    - agriculture
    - soil
    required: false
  drainage_class:
    name: drainage_class
    domain_of:
    - agriculture
    - soil
    required: false
  soil_text_measure:
    name: soil_text_measure
    domain_of:
    - soil
    required: false
  soil_texture_meth:
    name: soil_texture_meth
    domain_of:
    - food-farm environment
    - soil
    required: false
  ph:
    name: ph
    domain_of:
    - food-farm environment
    - water
    - wastewater_sludge
    - soil
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    required: false
  ph_meth:
    name: ph_meth
    domain_of:
    - agriculture
    - food-farm environment
    - soil
    required: false
  org_matter:
    name: org_matter
    domain_of:
    - water
    - soil
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    required: false
  tot_org_carb:
    name: tot_org_carb
    domain_of:
    - agriculture
    - food-farm environment
    - soil
    - sediment
    - microbial mat_biofilm
    required: false
  tot_org_c_meth:
    name: tot_org_c_meth
    domain_of:
    - agriculture
    - food-farm environment
    - soil
    required: false
  tot_nitro_content:
    name: tot_nitro_content
    domain_of:
    - food-farm environment
    - soil
    - sediment
    - microbial mat_biofilm
    required: false
  tot_nitro_cont_meth:
    name: tot_nitro_cont_meth
    domain_of:
    - food-farm environment
    - soil
    required: false
  microbial_biomass:
    name: microbial_biomass
    domain_of:
    - agriculture
    - soil
    required: false
  micro_biomass_meth:
    name: micro_biomass_meth
    domain_of:
    - soil
    required: false
  link_addit_analys:
    name: link_addit_analys
    domain_of:
    - soil
    required: false
  salinity_meth:
    name: salinity_meth
    domain_of:
    - food-farm environment
    - soil
    required: false
  heavy_metals:
    name: heavy_metals
    domain_of:
    - soil
    required: false
  heavy_metals_meth:
    name: heavy_metals_meth
    domain_of:
    - agriculture
    - soil
    required: false
  al_sat:
    name: al_sat
    domain_of:
    - soil
    required: false
  al_sat_meth:
    name: al_sat_meth
    domain_of:
    - soil
    required: false
  misc_param:
    name: misc_param
    domain_of:
    - agriculture
    - food-farm environment
    - food-food production facility
    - food-animal and animal feed
    - food-human foods
    - symbiont-associated
    - water
    - wastewater_sludge
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    required: false
attributes:
  lat_lon:
    name: lat_lon
    annotations:
      expected_value:
        tag: expected_value
        value: decimal degrees,  limit to 8 decimal points
    description: The geographical origin of the sample as defined by latitude and
      longitude. The values should be reported in decimal degrees and in WGS84 system
    title: geographic location (latitude and longitude)
    examples:
    - value: 50.586825 6.408977
    from_schema: http://w3id.org/mixs
    aliases:
    - geographic location (latitude and longitude)
    is_a: environment field
    string_serialization: '{float} {float}'
    slot_uri: MIXS:0000009
    multivalued: false
    alias: lat_lon
    owner: soil
    domain_of:
    - agriculture
    - food-farm environment
    - food-food production facility
    - food-animal and animal feed
    - food-human foods
    - symbiont-associated
    - water
    - wastewater_sludge
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - built environment
    - air
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    range: string
  depth:
    name: depth
    description: The vertical distance below local surface, e.g. for sediment or soil
      samples depth is measured from sediment or soil surface, respectively. Depth
      can be reported as an interval for subsurface samples.
    title: depth
    from_schema: http://w3id.org/mixs
    is_a: environment field
    slot_uri: MIXS:0000018
    multivalued: false
    alias: depth
    owner: soil
    domain_of:
    - agriculture
    - food-farm environment
    - food-food production facility
    - food-animal and animal feed
    - food-human foods
    - symbiont-associated
    - water
    - wastewater_sludge
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - built environment
    - air
    - core
    range: quantity value
    required: true
  alt:
    name: alt
    annotations:
      expected_value:
        tag: expected_value
        value: measurement value
    description: Altitude is a term used to identify heights of objects such as airplanes,
      space shuttles, rockets, atmospheric balloons and heights of places such as
      atmospheric layers and clouds. It is used to measure the height of an object
      which is above the earth's surface. In this context, the altitude measurement
      is the vertical distance between the earth's surface above sea level and the
      sampled position in the air
    title: altitude
    examples:
    - value: 100 meter
    from_schema: http://w3id.org/mixs
    aliases:
    - altitude
    is_a: environment field
    slot_uri: MIXS:0000094
    multivalued: false
    alias: alt
    owner: soil
    domain_of:
    - agriculture
    - food-farm environment
    - food-food production facility
    - food-animal and animal feed
    - food-human foods
    - symbiont-associated
    - water
    - wastewater_sludge
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - built environment
    - air
    - core
    range: quantity value
  elev:
    name: elev
    description: Elevation of the sampling site is its height above a fixed reference
      point, most commonly the mean sea level. Elevation is mainly used when referring
      to points on the earth's surface, while altitude is used for points above the
      surface, such as an aircraft in flight or a spacecraft in orbit.
    title: elevation
    from_schema: http://w3id.org/mixs
    is_a: environment field
    slot_uri: MIXS:0000093
    multivalued: false
    alias: elev
    owner: soil
    domain_of:
    - agriculture
    - food-farm environment
    - food-food production facility
    - food-animal and animal feed
    - food-human foods
    - symbiont-associated
    - water
    - wastewater_sludge
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - built environment
    - air
    - core
    range: quantity value
    required: true
  temp:
    name: temp
    description: Temperature of the sample at the time of sampling.
    title: temperature
    from_schema: http://w3id.org/mixs
    is_a: environment field
    slot_uri: MIXS:0000113
    multivalued: false
    alias: temp
    owner: soil
    domain_of:
    - agriculture
    - food-farm environment
    - food-food production facility
    - food-animal and animal feed
    - food-human foods
    - symbiont-associated
    - water
    - wastewater_sludge
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - built environment
    - air
    - core
    range: quantity value
    required: false
  geo_loc_name:
    name: geo_loc_name
    annotations:
      expected_value:
        tag: expected_value
        value: 'country or sea name (INSDC or GAZ): region(GAZ), specific location
          name'
    description: The geographical origin of the sample as defined by the country or
      sea name followed by specific region name. Country or sea names should be chosen
      from the INSDC country list (http://insdc.org/country.html), or the GAZ ontology
      (http://purl.bioontology.org/ontology/GAZ)
    title: geographic location (country and/or sea,region)
    examples:
    - value: 'USA: Maryland, Bethesda'
    from_schema: http://w3id.org/mixs
    aliases:
    - geographic location (country and/or sea,region)
    is_a: environment field
    string_serialization: '{term}: {term}, {text}'
    slot_uri: MIXS:0000010
    multivalued: false
    alias: geo_loc_name
    owner: soil
    domain_of:
    - agriculture
    - food-farm environment
    - food-food production facility
    - food-animal and animal feed
    - food-human foods
    - symbiont-associated
    - water
    - wastewater_sludge
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - built environment
    - air
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    range: string
  collection_date:
    name: collection_date
    annotations:
      expected_value:
        tag: expected_value
        value: date and time
    description: 'The time of sampling, either as an instance (single point in time)
      or interval. In case no exact time is available, the date/time can be right
      truncated i.e. all of these are valid times: 2008-01-23T19:23:10+00:00; 2008-01-23T19:23:10;
      2008-01-23; 2008-01; 2008; Except: 2008-01; 2008 all are ISO8601 compliant'
    title: collection date
    examples:
    - value: 2018-05-11T10:00:00+01:00; 2018-05-11
    from_schema: http://w3id.org/mixs
    aliases:
    - collection date
    is_a: environment field
    slot_uri: MIXS:0000011
    multivalued: false
    alias: collection_date
    owner: soil
    domain_of:
    - agriculture
    - food-farm environment
    - food-food production facility
    - food-animal and animal feed
    - food-human foods
    - symbiont-associated
    - water
    - wastewater_sludge
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - built environment
    - air
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    range: date
  env_broad_scale:
    name: env_broad_scale
    annotations:
      expected_value:
        tag: expected_value
        value: The major environment type(s) where the sample was collected. Recommend
          subclasses of biome [ENVO:00000428]. Multiple terms can be separated by
          one or more pipes.
    description: 'Report the major environmental system the sample or specimen came
      from. The system(s) identified should have a coarse spatial grain, to provide
      the general environmental context of where the sampling was done (e.g. in the
      desert or a rainforest). We recommend using subclasses of EnvO’s biome class:  http://purl.obolibrary.org/obo/ENVO_00000428.
      EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS'
    title: broad-scale environmental context
    examples:
    - value: oceanic epipelagic zone biome [ENVO:01000033] for annotating a water
        sample from the photic zone in middle of the Atlantic Ocean
    from_schema: http://w3id.org/mixs
    aliases:
    - broad-scale environmental context
    is_a: environment field
    string_serialization: '{termLabel} {[termID]}'
    slot_uri: MIXS:0000012
    multivalued: false
    alias: env_broad_scale
    owner: soil
    domain_of:
    - agriculture
    - food-farm environment
    - food-food production facility
    - food-animal and animal feed
    - food-human foods
    - symbiont-associated
    - water
    - wastewater_sludge
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - built environment
    - air
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    range: string
  env_local_scale:
    name: env_local_scale
    annotations:
      expected_value:
        tag: expected_value
        value: Environmental entities having causal influences upon the entity at
          time of sampling.
    description: 'Report the entity or entities which are in the sample or specimen’s
      local vicinity and which you believe have significant causal influences on your
      sample or specimen. We recommend using EnvO terms which are of smaller spatial
      grain than your entry for env_broad_scale. Terms, such as anatomical sites,
      from other OBO Library ontologies which interoperate with EnvO (e.g. UBERON)
      are accepted in this field. EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS.'
    title: local environmental context
    examples:
    - value: 'litter layer [ENVO:01000338]; Annotating a pooled sample taken from
        various vegetation layers in a forest consider: canopy [ENVO:00000047]|herb
        and fern layer [ENVO:01000337]|litter layer [ENVO:01000338]|understory [01000335]|shrub
        layer [ENVO:01000336].'
    from_schema: http://w3id.org/mixs
    aliases:
    - local environmental context
    is_a: environment field
    string_serialization: '{termLabel} {[termID]}'
    slot_uri: MIXS:0000013
    multivalued: false
    alias: env_local_scale
    owner: soil
    domain_of:
    - agriculture
    - food-farm environment
    - food-food production facility
    - food-animal and animal feed
    - food-human foods
    - symbiont-associated
    - water
    - wastewater_sludge
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - built environment
    - air
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    range: string
  env_medium:
    name: env_medium
    annotations:
      expected_value:
        tag: expected_value
        value: The material displaced by the entity at time of sampling. Recommend
          subclasses of environmental material [ENVO:00010483].
    description: 'Report the environmental material(s) immediately surrounding the
      sample or specimen at the time of sampling. We recommend using subclasses of
      ''environmental material'' (http://purl.obolibrary.org/obo/ENVO_00010483). EnvO
      documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS
      . Terms from other OBO ontologies are permissible as long as they reference
      mass/volume nouns (e.g. air, water, blood) and not discrete, countable entities
      (e.g. a tree, a leaf, a table top).'
    title: environmental medium
    examples:
    - value: 'soil [ENVO:00001998]; Annotating a fish swimming in the upper 100 m
        of the Atlantic Ocean, consider: ocean water [ENVO:00002151]. Example: Annotating
        a duck on a pond consider: pond water [ENVO:00002228]|air [ENVO_00002005]'
    from_schema: http://w3id.org/mixs
    aliases:
    - environmental medium
    is_a: environment field
    string_serialization: '{termLabel} {[termID]}'
    slot_uri: MIXS:0000014
    multivalued: false
    alias: env_medium
    owner: soil
    domain_of:
    - agriculture
    - food-farm environment
    - food-food production facility
    - food-animal and animal feed
    - food-human foods
    - symbiont-associated
    - water
    - wastewater_sludge
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - built environment
    - air
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    range: string
  cur_land_use:
    name: cur_land_use
    description: Present state of sample site
    title: current land use
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0001080
    multivalued: false
    alias: cur_land_use
    owner: soil
    domain_of:
    - agriculture
    - soil
    range: cur_land_use_enum
    required: false
  cur_vegetation:
    name: cur_vegetation
    description: Vegetation classification from one or more standard classification
      systems, or agricultural crop
    title: current vegetation
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0000312
    multivalued: false
    alias: cur_vegetation
    owner: soil
    domain_of:
    - agriculture
    - soil
    range: string
    required: false
  cur_vegetation_meth:
    name: cur_vegetation_meth
    description: Reference or method used in vegetation classification
    title: current vegetation method
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{PMID}|{DOI}|{URL}'
    slot_uri: MIXS:0000314
    multivalued: false
    alias: cur_vegetation_meth
    owner: soil
    domain_of:
    - agriculture
    - soil
    range: string
    required: false
  previous_land_use:
    name: previous_land_use
    description: Previous land use and dates
    title: history/previous land use
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text};{timestamp}'
    slot_uri: MIXS:0000315
    multivalued: false
    alias: previous_land_use
    owner: soil
    domain_of:
    - agriculture
    - food-farm environment
    - soil
    range: string
    required: false
  prev_land_use_meth:
    name: prev_land_use_meth
    description: Reference or method used in determining previous land use and dates
    title: history/previous land use method
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{PMID}|{DOI}|{URL}'
    slot_uri: MIXS:0000316
    multivalued: false
    alias: prev_land_use_meth
    owner: soil
    domain_of:
    - soil
    range: string
    required: false
  crop_rotation:
    name: crop_rotation
    description: Whether or not crop is rotated, and if yes, rotation schedule
    title: history/crop rotation
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{boolean};{Rn/start_time/end_time/duration}'
    slot_uri: MIXS:0000318
    multivalued: false
    alias: crop_rotation
    owner: soil
    domain_of:
    - agriculture
    - food-farm environment
    - soil
    range: string
    required: false
  agrochem_addition:
    name: agrochem_addition
    description: Addition of fertilizers, pesticides, etc. - amount and time of applications
    title: history/agrochemical additions
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text};{float} {unit};{timestamp}'
    slot_uri: MIXS:0000639
    multivalued: true
    alias: agrochem_addition
    owner: soil
    domain_of:
    - agriculture
    - soil
    range: string
    required: false
  tillage:
    name: tillage
    description: Note method(s) used for tilling
    title: history/tillage
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0001081
    multivalued: true
    alias: tillage
    owner: soil
    domain_of:
    - agriculture
    - food-farm environment
    - soil
    range: tillage_enum
    required: false
  fire:
    name: fire
    description: Historical and/or physical evidence of fire
    title: history/fire
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0001086
    multivalued: false
    alias: fire
    owner: soil
    domain_of:
    - agriculture
    - soil
    range: date
    required: false
  flooding:
    name: flooding
    description: Historical and/or physical evidence of flooding
    title: history/flooding
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000319
    multivalued: false
    alias: flooding
    owner: soil
    domain_of:
    - agriculture
    - soil
    range: date
    required: false
  extreme_event:
    name: extreme_event
    description: Unusual physical events that may have affected microbial populations
    title: history/extreme events
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000320
    multivalued: false
    alias: extreme_event
    owner: soil
    domain_of:
    - agriculture
    - soil
    range: date
    required: false
  soil_horizon:
    name: soil_horizon
    description: Specific layer in the land area which measures parallel to the soil
      surface and possesses physical characteristics which differ from the layers
      above and beneath
    title: soil horizon
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0001082
    multivalued: false
    alias: soil_horizon
    owner: soil
    domain_of:
    - agriculture
    - soil
    range: soil_horizon_enum
    required: false
  horizon_meth:
    name: horizon_meth
    description: Reference or method used in determining the horizon
    title: soil horizon method
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{PMID}|{DOI}|{URL}'
    slot_uri: MIXS:0000321
    multivalued: false
    alias: horizon_meth
    owner: soil
    domain_of:
    - agriculture
    - soil
    range: string
    required: false
  sieving:
    name: sieving
    description: Collection design of pooled samples and/or sieve size and amount
      of sample sieved
    title: composite design/sieving
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{{text}|{float} {unit}};{float} {unit}'
    slot_uri: MIXS:0000322
    multivalued: false
    alias: sieving
    owner: soil
    domain_of:
    - agriculture
    - soil
    range: string
    required: false
  water_content:
    name: water_content
    description: Water content measurement
    title: water content
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000185
    multivalued: false
    alias: water_content
    owner: soil
    domain_of:
    - soil
    - sediment
    - microbial mat_biofilm
    range: quantity value
    required: false
  water_cont_soil_meth:
    name: water_cont_soil_meth
    description: Reference or method used in determining the water content of soil
    title: water content method
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{PMID}|{DOI}|{URL}'
    slot_uri: MIXS:0000323
    multivalued: false
    alias: water_cont_soil_meth
    owner: soil
    domain_of:
    - soil
    range: string
    required: false
  pool_dna_extracts:
    name: pool_dna_extracts
    description: Indicate whether multiple DNA extractions were mixed. If the answer
      yes, the number of extracts that were pooled should be given
    title: pooling of DNA extracts (if done)
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{boolean};{integer}'
    slot_uri: MIXS:0000325
    multivalued: false
    alias: pool_dna_extracts
    owner: soil
    domain_of:
    - agriculture
    - food-food production facility
    - food-animal and animal feed
    - food-human foods
    - soil
    range: string
    required: false
  store_cond:
    name: store_cond
    description: Explain how and for how long the soil sample was stored before DNA
      extraction (fresh/frozen/other).
    title: storage conditions
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text};{duration}'
    slot_uri: MIXS:0000327
    multivalued: false
    alias: store_cond
    owner: soil
    domain_of:
    - agriculture
    - soil
    range: string
    required: false
  link_climate_info:
    name: link_climate_info
    description: Link to climate resource
    title: link to climate information
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{PMID}|{DOI}|{URL}'
    slot_uri: MIXS:0000328
    multivalued: false
    alias: link_climate_info
    owner: soil
    domain_of:
    - agriculture
    - soil
    range: string
    required: false
  annual_temp:
    name: annual_temp
    description: Mean annual temperature
    title: mean annual temperature
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000642
    multivalued: false
    alias: annual_temp
    owner: soil
    domain_of:
    - agriculture
    - soil
    range: quantity value
    required: false
  season_temp:
    name: season_temp
    description: Mean seasonal temperature
    title: mean seasonal temperature
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000643
    multivalued: false
    alias: season_temp
    owner: soil
    domain_of:
    - agriculture
    - food-farm environment
    - soil
    range: quantity value
    required: false
  annual_precpt:
    name: annual_precpt
    description: The average of all annual precipitation values known, or an estimated
      equivalent value derived by such methods as regional indexes or Isohyetal maps.
    title: mean annual precipitation
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000644
    multivalued: false
    alias: annual_precpt
    owner: soil
    domain_of:
    - agriculture
    - soil
    range: quantity value
    required: false
  season_precpt:
    name: season_precpt
    description: The average of all seasonal precipitation values known, or an estimated
      equivalent value derived by such methods as regional indexes or Isohyetal maps.
    title: mean seasonal precipitation
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000645
    multivalued: false
    alias: season_precpt
    owner: soil
    domain_of:
    - agriculture
    - food-farm environment
    - soil
    range: quantity value
    required: false
  link_class_info:
    name: link_class_info
    description: Link to digitized soil maps or other soil classification information
    title: link to classification information
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{PMID}|{DOI}|{URL}'
    slot_uri: MIXS:0000329
    multivalued: false
    alias: link_class_info
    owner: soil
    domain_of:
    - agriculture
    - soil
    range: string
    required: false
  fao_class:
    name: fao_class
    description: Soil classification from the FAO World Reference Database for Soil
      Resources. The list can be found at http://www.fao.org/nr/land/sols/soil/wrb-soil-maps/reference-groups
    title: soil_taxonomic/FAO classification
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0001083
    multivalued: false
    alias: fao_class
    owner: soil
    domain_of:
    - agriculture
    - soil
    range: fao_class_enum
    required: false
  local_class:
    name: local_class
    description: Soil classification based on local soil classification system
    title: soil_taxonomic/local classification
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0000330
    multivalued: false
    alias: local_class
    owner: soil
    domain_of:
    - agriculture
    - soil
    range: string
    required: false
  local_class_meth:
    name: local_class_meth
    description: Reference or method used in determining the local soil classification
    title: soil_taxonomic/local classification method
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{PMID}|{DOI}|{URL}'
    slot_uri: MIXS:0000331
    multivalued: false
    alias: local_class_meth
    owner: soil
    domain_of:
    - agriculture
    - soil
    range: string
    required: false
  org_nitro:
    name: org_nitro
    description: Concentration of organic nitrogen
    title: organic nitrogen
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000205
    multivalued: false
    alias: org_nitro
    owner: soil
    domain_of:
    - water
    - soil
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    range: quantity value
    required: false
  soil_type:
    name: soil_type
    description: Description of the soil type or classification. This field accepts
      terms under soil (http://purl.obolibrary.org/obo/ENVO_00001998).  Multiple terms
      can be separated by pipes.
    title: soil type
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{termLabel} {[termID]}'
    slot_uri: MIXS:0000332
    multivalued: false
    alias: soil_type
    owner: soil
    domain_of:
    - agriculture
    - food-farm environment
    - soil
    range: string
    required: false
  soil_type_meth:
    name: soil_type_meth
    description: Reference or method used in determining soil series name or other
      lower-level classification
    title: soil type method
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{PMID}|{DOI}|{URL}'
    slot_uri: MIXS:0000334
    multivalued: false
    alias: soil_type_meth
    owner: soil
    domain_of:
    - agriculture
    - food-farm environment
    - soil
    range: string
    required: false
  slope_gradient:
    name: slope_gradient
    description: Commonly called 'slope'. The angle between ground surface and a horizontal
      line (in percent). This is the direction that overland water would flow. This
      measure is usually taken with a hand level meter or clinometer
    title: slope gradient
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000646
    multivalued: false
    alias: slope_gradient
    owner: soil
    domain_of:
    - agriculture
    - soil
    range: quantity value
    required: false
  slope_aspect:
    name: slope_aspect
    description: The direction a slope faces. While looking down a slope use a compass
      to record the direction you are facing (direction or degrees); e.g., nw or 315
      degrees. This measure provides an indication of sun and wind exposure that will
      influence soil temperature and evapotranspiration.
    title: slope aspect
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000647
    multivalued: false
    alias: slope_aspect
    owner: soil
    domain_of:
    - agriculture
    - soil
    range: quantity value
    required: false
  profile_position:
    name: profile_position
    description: Cross-sectional position in the hillslope where sample was collected.sample
      area position in relation to surrounding areas
    title: profile position
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0001084
    multivalued: false
    alias: profile_position
    owner: soil
    domain_of:
    - agriculture
    - soil
    range: profile_position_enum
    required: false
  drainage_class:
    name: drainage_class
    description: Drainage classification from a standard system such as the USDA system
    title: drainage classification
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0001085
    multivalued: false
    alias: drainage_class
    owner: soil
    domain_of:
    - agriculture
    - soil
    range: drainage_class_enum
    required: false
  soil_text_measure:
    name: soil_text_measure
    description: The relative proportion of different grain sizes of mineral particles
      in a soil, as described using a standard system; express as % sand (50 um to
      2 mm), silt (2 um to 50 um), and clay (<2 um) with textural name (e.g., silty
      clay loam) optional.
    title: soil texture measurement
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000335
    multivalued: false
    alias: soil_text_measure
    owner: soil
    domain_of:
    - soil
    range: quantity value
    required: false
  soil_texture_meth:
    name: soil_texture_meth
    description: Reference or method used in determining soil texture
    title: soil texture method
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{PMID}|{DOI}|{URL}'
    slot_uri: MIXS:0000336
    multivalued: false
    alias: soil_texture_meth
    owner: soil
    domain_of:
    - food-farm environment
    - soil
    range: string
    required: false
  ph:
    name: ph
    description: Ph measurement of the sample, or liquid portion of sample, or aqueous
      phase of the fluid
    title: pH
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0001001
    multivalued: false
    alias: ph
    owner: soil
    domain_of:
    - food-farm environment
    - water
    - wastewater_sludge
    - soil
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: double
    required: false
  ph_meth:
    name: ph_meth
    description: Reference or method used in determining ph
    title: pH method
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{PMID}|{DOI}|{URL}'
    slot_uri: MIXS:0001106
    multivalued: false
    alias: ph_meth
    owner: soil
    domain_of:
    - agriculture
    - food-farm environment
    - soil
    range: string
    required: false
  org_matter:
    name: org_matter
    description: Concentration of organic matter
    title: organic matter
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000204
    multivalued: false
    alias: org_matter
    owner: soil
    domain_of:
    - water
    - soil
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    range: quantity value
    required: false
  tot_org_carb:
    name: tot_org_carb
    description: 'Definition for soil: total organic carbon content of the soil, definition
      otherwise: total organic carbon content'
    title: total organic carbon
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000533
    multivalued: false
    alias: tot_org_carb
    owner: soil
    domain_of:
    - agriculture
    - food-farm environment
    - soil
    - sediment
    - microbial mat_biofilm
    range: quantity value
    required: false
  tot_org_c_meth:
    name: tot_org_c_meth
    description: Reference or method used in determining total organic carbon
    title: total organic carbon method
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{PMID}|{DOI}|{URL}'
    slot_uri: MIXS:0000337
    multivalued: false
    alias: tot_org_c_meth
    owner: soil
    domain_of:
    - agriculture
    - food-farm environment
    - soil
    range: string
    required: false
  tot_nitro_content:
    name: tot_nitro_content
    description: Total nitrogen content of the sample
    title: total nitrogen content
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000530
    multivalued: false
    alias: tot_nitro_content
    owner: soil
    domain_of:
    - food-farm environment
    - soil
    - sediment
    - microbial mat_biofilm
    range: quantity value
    required: false
  tot_nitro_cont_meth:
    name: tot_nitro_cont_meth
    description: Reference or method used in determining the total nitrogen
    title: total nitrogen content method
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{PMID}|{DOI}|{URL}'
    slot_uri: MIXS:0000338
    multivalued: false
    alias: tot_nitro_cont_meth
    owner: soil
    domain_of:
    - food-farm environment
    - soil
    range: string
    required: false
  microbial_biomass:
    name: microbial_biomass
    description: The part of the organic matter in the soil that constitutes living
      microorganisms smaller than 5-10 micrometer. If you keep this, you would need
      to have correction factors used for conversion to the final units
    title: microbial biomass
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000650
    multivalued: false
    alias: microbial_biomass
    owner: soil
    domain_of:
    - agriculture
    - soil
    range: quantity value
    required: false
  micro_biomass_meth:
    name: micro_biomass_meth
    description: Reference or method used in determining microbial biomass
    title: microbial biomass method
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{PMID}|{DOI}|{URL}'
    slot_uri: MIXS:0000339
    multivalued: false
    alias: micro_biomass_meth
    owner: soil
    domain_of:
    - soil
    range: string
    required: false
  link_addit_analys:
    name: link_addit_analys
    description: Link to additional analysis results performed on the sample
    title: links to additional analysis
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{PMID}|{DOI}|{URL}'
    slot_uri: MIXS:0000340
    multivalued: false
    alias: link_addit_analys
    owner: soil
    domain_of:
    - soil
    range: string
    required: false
  salinity_meth:
    name: salinity_meth
    description: Reference or method used in determining salinity
    title: salinity method
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{PMID}|{DOI}|{URL}'
    slot_uri: MIXS:0000341
    multivalued: false
    alias: salinity_meth
    owner: soil
    domain_of:
    - food-farm environment
    - soil
    range: string
    required: false
  heavy_metals:
    name: heavy_metals
    description: Heavy metals present in the sequenced sample and their concentrations.
      For multiple heavy metals and concentrations, add multiple copies of this field.
    title: extreme_unusual_properties/heavy metals
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text};{float} {unit}'
    slot_uri: MIXS:0000652
    multivalued: true
    alias: heavy_metals
    owner: soil
    domain_of:
    - soil
    range: string
    required: false
  heavy_metals_meth:
    name: heavy_metals_meth
    description: Reference or method used in determining heavy metals
    title: extreme_unusual_properties/heavy metals method
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{PMID}|{DOI}|{URL}'
    slot_uri: MIXS:0000343
    multivalued: false
    alias: heavy_metals_meth
    owner: soil
    domain_of:
    - agriculture
    - soil
    range: string
    required: false
  al_sat:
    name: al_sat
    description: Aluminum saturation (esp. For tropical soils)
    title: extreme_unusual_properties/Al saturation
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000607
    multivalued: false
    alias: al_sat
    owner: soil
    domain_of:
    - soil
    range: quantity value
    required: false
  al_sat_meth:
    name: al_sat_meth
    description: Reference or method used in determining Al saturation
    title: extreme_unusual_properties/Al saturation method
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{PMID}|{DOI}|{URL}'
    slot_uri: MIXS:0000324
    multivalued: false
    alias: al_sat_meth
    owner: soil
    domain_of:
    - soil
    range: string
    required: false
  misc_param:
    name: misc_param
    description: Any other measurement performed or parameter collected, that is not
      listed here
    title: miscellaneous parameter
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text};{float} {unit}'
    slot_uri: MIXS:0000752
    multivalued: true
    alias: misc_param
    owner: soil
    domain_of:
    - agriculture
    - food-farm environment
    - food-food production facility
    - food-animal and animal feed
    - food-human foods
    - symbiont-associated
    - water
    - wastewater_sludge
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    range: string
    required: false