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Class: Human-vaginal

human-vaginal

URI: MIXS:Human-vaginal

Inheritance

Slots

Name Cardinality and Range Description Inheritance
lat_lon 0..1
String		 The geographical origin of the sample as defined by latitude and longitude direct
depth 0..1
QuantityValue		 The vertical distance below local surface, e direct
alt 0..1
QuantityValue		 Altitude is a term used to identify heights of objects such as airplanes, spa... direct
elev 0..1
QuantityValue		 Elevation of the sampling site is its height above a fixed reference point, m... direct
temp 0..1
QuantityValue		 Temperature of the sample at the time of sampling direct
geo_loc_name 0..1
String		 The geographical origin of the sample as defined by the country or sea name f... direct
collection_date 0..1
Date		 The time of sampling, either as an instance (single point in time) or interva... direct
env_broad_scale 0..1
String		 Report the major environmental system the sample or specimen came from direct
env_local_scale 0..1
String		 Report the entity or entities which are in the sample or specimen’s local vic... direct
env_medium 0..1
String		 Report the environmental material(s) immediately surrounding the sample or sp... direct
menarche 0..1
Date		 Date of most recent menstruation direct
sexual_act 0..1
String		 Current sexual partner and frequency of sex direct
pregnancy 0..1
Date		 Date due of pregnancy direct
douche 0..1
Date		 Date of most recent douche direct
birth_control 0..1
String		 Specification of birth control medication used direct
menopause 0..1
Date		 Date of onset of menopause direct
hrt 0..1
Date		 Whether subject had hormone replacement theraphy, and if yes start date direct
hysterectomy 0..1
String		 Specification of whether hysterectomy was performed direct
gynecologic_disord 0..*
String		 History of gynecological disorders; can include multiple disorders direct
urogenit_disord 0..*
String		 History of urogenital disorders, can include multiple disorders direct
host_subject_id 0..1
String		 A unique identifier by which each subject can be referred to, de-identified direct
host_age 0..1
QuantityValue		 Age of host at the time of sampling; relevant scale depends on species and st... direct
host_sex 0..1
HostSexEnum		 Gender or physical sex of the host direct
ihmc_medication_code 0..*
Integer		 Can include multiple medication codes direct
chem_administration 0..*
String		 List of chemical compounds administered to the host or site where sampling oc... direct
host_body_site 0..1
String		 Name of body site where the sample was obtained from, such as a specific orga... direct
host_body_product 0..1
String		 Substance produced by the body, e direct
host_tot_mass 0..1
QuantityValue		 Total mass of the host at collection, the unit depends on host direct
host_height 0..1
QuantityValue		 The height of subject direct
host_diet 0..*
String		 Type of diet depending on the host, for animals omnivore, herbivore etc direct
host_last_meal 0..*
String		 Content of last meal and time since feeding; can include multiple values direct
host_family_relation 0..*
String		 Familial relationships to other hosts in the same study; can include multiple... direct
host_genotype 0..1
String		 Observed genotype direct
host_phenotype 0..1
String		 Phenotype of human or other host direct
host_body_temp 0..1
QuantityValue		 Core body temperature of the host when sample was collected direct
host_body_mass_index 0..1
QuantityValue		 Body mass index, calculated as weight/(height)squared direct
ethnicity 0..*
String		 A category of people who identify with each other, usually on the basis of pr... direct
host_occupation 0..1
Integer		 Most frequent job performed by subject direct
medic_hist_perform 0..1
String		 Whether full medical history was collected direct
host_pulse 0..1
QuantityValue		 Resting pulse, measured as beats per minute direct
perturbation 0..*
String		 Type of perturbation, e direct
samp_salinity 0..1
QuantityValue		 Salinity is the total concentration of all dissolved salts in a liquid or sol... direct
salinity 0..1
QuantityValue		 The total concentration of all dissolved salts in a liquid or solid sample direct
oxy_stat_samp 0..1
OxyStatSampEnum		 Oxygenation status of sample direct
organism_count 0..*
OrganismCountEnum		 Total cell count of any organism (or group of organisms) per gram, volume or ... direct
samp_store_temp 0..1
QuantityValue		 Temperature at which sample was stored, e direct
samp_store_loc 0..1
String		 Location at which sample was stored, usually name of a specific freezer/room direct
samp_store_dur 0..1
String		 Duration for which the sample was stored direct
host_symbiont 0..*
String		 The taxonomic name of the organism(s) found living in mutualistic, commensali... direct
misc_param 0..*
String		 Any other measurement performed or parameter collected, that is not listed he... direct

Identifier and Mapping Information

Schema Source

  • from schema: http://w3id.org/mixs

Mappings

Mapping Type Mapped Value
self MIXS:Human-vaginal
native MIXS:Human-vaginal

LinkML Source

Direct

name: human-vaginal
description: human-vaginal
from_schema: http://w3id.org/mixs
slots:
- lat_lon
- depth
- alt
- elev
- temp
- geo_loc_name
- collection_date
- env_broad_scale
- env_local_scale
- env_medium
- menarche
- sexual_act
- pregnancy
- douche
- birth_control
- menopause
- hrt
- hysterectomy
- gynecologic_disord
- urogenit_disord
- host_subject_id
- host_age
- host_sex
- ihmc_medication_code
- chem_administration
- host_body_site
- host_body_product
- host_tot_mass
- host_height
- host_diet
- host_last_meal
- host_family_relation
- host_genotype
- host_phenotype
- host_body_temp
- host_body_mass_index
- ethnicity
- host_occupation
- medic_hist_perform
- host_pulse
- perturbation
- samp_salinity
- salinity
- oxy_stat_samp
- organism_count
- samp_store_temp
- samp_store_loc
- samp_store_dur
- host_symbiont
- misc_param
slot_usage:
  samp_name:
    name: samp_name
    required: true
  project_name:
    name: project_name
    required: true
  menarche:
    name: menarche
    domain_of:
    - human-vaginal
    required: false
  sexual_act:
    name: sexual_act
    domain_of:
    - human-vaginal
    required: false
  pregnancy:
    name: pregnancy
    domain_of:
    - human-vaginal
    required: false
  douche:
    name: douche
    domain_of:
    - human-vaginal
    required: false
  birth_control:
    name: birth_control
    domain_of:
    - human-vaginal
    required: false
  menopause:
    name: menopause
    domain_of:
    - human-vaginal
    required: false
  hrt:
    name: hrt
    domain_of:
    - human-vaginal
    required: false
  hysterectomy:
    name: hysterectomy
    domain_of:
    - human-vaginal
    required: false
  gynecologic_disord:
    name: gynecologic_disord
    domain_of:
    - human-vaginal
    required: false
  urogenit_disord:
    name: urogenit_disord
    domain_of:
    - human-vaginal
    required: false
  host_subject_id:
    name: host_subject_id
    domain_of:
    - symbiont-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    required: false
  host_age:
    name: host_age
    domain_of:
    - agriculture
    - food-farm environment
    - symbiont-associated
    - plant-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    required: false
  host_sex:
    name: host_sex
    domain_of:
    - symbiont-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    required: false
  host_disease_stat:
    name: host_disease_stat
    required: false
  ihmc_medication_code:
    name: ihmc_medication_code
    domain_of:
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    required: false
  chem_administration:
    name: chem_administration
    domain_of:
    - agriculture
    - food-farm environment
    - symbiont-associated
    - water
    - wastewater_sludge
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    required: false
  host_body_site:
    name: host_body_site
    domain_of:
    - symbiont-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    required: false
  host_body_product:
    name: host_body_product
    domain_of:
    - symbiont-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    required: false
  host_tot_mass:
    name: host_tot_mass
    domain_of:
    - agriculture
    - food-farm environment
    - symbiont-associated
    - plant-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    required: false
  host_height:
    name: host_height
    domain_of:
    - agriculture
    - food-farm environment
    - symbiont-associated
    - plant-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    required: false
  host_diet:
    name: host_diet
    domain_of:
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    required: false
  host_last_meal:
    name: host_last_meal
    domain_of:
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    required: false
  host_family_relation:
    name: host_family_relation
    domain_of:
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    required: false
  host_genotype:
    name: host_genotype
    domain_of:
    - agriculture
    - food-farm environment
    - symbiont-associated
    - plant-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    required: false
  host_phenotype:
    name: host_phenotype
    domain_of:
    - agriculture
    - food-farm environment
    - symbiont-associated
    - plant-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    required: false
  host_body_temp:
    name: host_body_temp
    domain_of:
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    required: false
  host_body_mass_index:
    name: host_body_mass_index
    domain_of:
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    required: false
  ethnicity:
    name: ethnicity
    domain_of:
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    required: false
  host_occupation:
    name: host_occupation
    domain_of:
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    required: false
  medic_hist_perform:
    name: medic_hist_perform
    domain_of:
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    required: false
  host_pulse:
    name: host_pulse
    domain_of:
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    required: false
  perturbation:
    name: perturbation
    domain_of:
    - agriculture
    - food-farm environment
    - food-animal and animal feed
    - food-human foods
    - symbiont-associated
    - water
    - wastewater_sludge
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    required: false
  samp_salinity:
    name: samp_salinity
    domain_of:
    - symbiont-associated
    - human-vaginal
    required: false
  salinity:
    name: salinity
    domain_of:
    - food-farm environment
    - water
    - wastewater_sludge
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    required: false
  oxy_stat_samp:
    name: oxy_stat_samp
    domain_of:
    - agriculture
    - symbiont-associated
    - water
    - wastewater_sludge
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    required: false
  temp:
    name: temp
    domain_of:
    - agriculture
    - food-farm environment
    - food-food production facility
    - food-animal and animal feed
    - food-human foods
    - symbiont-associated
    - water
    - wastewater_sludge
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - built environment
    - air
    - core
    required: false
  organism_count:
    name: organism_count
    domain_of:
    - agriculture
    - food-farm environment
    - food-food production facility
    - food-animal and animal feed
    - food-human foods
    - symbiont-associated
    - water
    - wastewater_sludge
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - built environment
    - air
    required: false
  samp_vol_we_dna_ext:
    name: samp_vol_we_dna_ext
    required: false
  samp_store_temp:
    name: samp_store_temp
    domain_of:
    - symbiont-associated
    - water
    - wastewater_sludge
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    required: false
  samp_store_loc:
    name: samp_store_loc
    domain_of:
    - agriculture
    - symbiont-associated
    - water
    - wastewater_sludge
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    required: false
  samp_store_dur:
    name: samp_store_dur
    domain_of:
    - agriculture
    - symbiont-associated
    - water
    - wastewater_sludge
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    required: false
  host_symbiont:
    name: host_symbiont
    domain_of:
    - agriculture
    - symbiont-associated
    - plant-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    required: false
  misc_param:
    name: misc_param
    domain_of:
    - agriculture
    - food-farm environment
    - food-food production facility
    - food-animal and animal feed
    - food-human foods
    - symbiont-associated
    - water
    - wastewater_sludge
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    required: false

Induced

name: human-vaginal
description: human-vaginal
from_schema: http://w3id.org/mixs
slot_usage:
  samp_name:
    name: samp_name
    required: true
  project_name:
    name: project_name
    required: true
  menarche:
    name: menarche
    domain_of:
    - human-vaginal
    required: false
  sexual_act:
    name: sexual_act
    domain_of:
    - human-vaginal
    required: false
  pregnancy:
    name: pregnancy
    domain_of:
    - human-vaginal
    required: false
  douche:
    name: douche
    domain_of:
    - human-vaginal
    required: false
  birth_control:
    name: birth_control
    domain_of:
    - human-vaginal
    required: false
  menopause:
    name: menopause
    domain_of:
    - human-vaginal
    required: false
  hrt:
    name: hrt
    domain_of:
    - human-vaginal
    required: false
  hysterectomy:
    name: hysterectomy
    domain_of:
    - human-vaginal
    required: false
  gynecologic_disord:
    name: gynecologic_disord
    domain_of:
    - human-vaginal
    required: false
  urogenit_disord:
    name: urogenit_disord
    domain_of:
    - human-vaginal
    required: false
  host_subject_id:
    name: host_subject_id
    domain_of:
    - symbiont-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    required: false
  host_age:
    name: host_age
    domain_of:
    - agriculture
    - food-farm environment
    - symbiont-associated
    - plant-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    required: false
  host_sex:
    name: host_sex
    domain_of:
    - symbiont-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    required: false
  host_disease_stat:
    name: host_disease_stat
    required: false
  ihmc_medication_code:
    name: ihmc_medication_code
    domain_of:
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    required: false
  chem_administration:
    name: chem_administration
    domain_of:
    - agriculture
    - food-farm environment
    - symbiont-associated
    - water
    - wastewater_sludge
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    required: false
  host_body_site:
    name: host_body_site
    domain_of:
    - symbiont-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    required: false
  host_body_product:
    name: host_body_product
    domain_of:
    - symbiont-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    required: false
  host_tot_mass:
    name: host_tot_mass
    domain_of:
    - agriculture
    - food-farm environment
    - symbiont-associated
    - plant-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    required: false
  host_height:
    name: host_height
    domain_of:
    - agriculture
    - food-farm environment
    - symbiont-associated
    - plant-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    required: false
  host_diet:
    name: host_diet
    domain_of:
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    required: false
  host_last_meal:
    name: host_last_meal
    domain_of:
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    required: false
  host_family_relation:
    name: host_family_relation
    domain_of:
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    required: false
  host_genotype:
    name: host_genotype
    domain_of:
    - agriculture
    - food-farm environment
    - symbiont-associated
    - plant-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    required: false
  host_phenotype:
    name: host_phenotype
    domain_of:
    - agriculture
    - food-farm environment
    - symbiont-associated
    - plant-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    required: false
  host_body_temp:
    name: host_body_temp
    domain_of:
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    required: false
  host_body_mass_index:
    name: host_body_mass_index
    domain_of:
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    required: false
  ethnicity:
    name: ethnicity
    domain_of:
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    required: false
  host_occupation:
    name: host_occupation
    domain_of:
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    required: false
  medic_hist_perform:
    name: medic_hist_perform
    domain_of:
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    required: false
  host_pulse:
    name: host_pulse
    domain_of:
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    required: false
  perturbation:
    name: perturbation
    domain_of:
    - agriculture
    - food-farm environment
    - food-animal and animal feed
    - food-human foods
    - symbiont-associated
    - water
    - wastewater_sludge
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    required: false
  samp_salinity:
    name: samp_salinity
    domain_of:
    - symbiont-associated
    - human-vaginal
    required: false
  salinity:
    name: salinity
    domain_of:
    - food-farm environment
    - water
    - wastewater_sludge
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    required: false
  oxy_stat_samp:
    name: oxy_stat_samp
    domain_of:
    - agriculture
    - symbiont-associated
    - water
    - wastewater_sludge
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    required: false
  temp:
    name: temp
    domain_of:
    - agriculture
    - food-farm environment
    - food-food production facility
    - food-animal and animal feed
    - food-human foods
    - symbiont-associated
    - water
    - wastewater_sludge
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - built environment
    - air
    - core
    required: false
  organism_count:
    name: organism_count
    domain_of:
    - agriculture
    - food-farm environment
    - food-food production facility
    - food-animal and animal feed
    - food-human foods
    - symbiont-associated
    - water
    - wastewater_sludge
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - built environment
    - air
    required: false
  samp_vol_we_dna_ext:
    name: samp_vol_we_dna_ext
    required: false
  samp_store_temp:
    name: samp_store_temp
    domain_of:
    - symbiont-associated
    - water
    - wastewater_sludge
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    required: false
  samp_store_loc:
    name: samp_store_loc
    domain_of:
    - agriculture
    - symbiont-associated
    - water
    - wastewater_sludge
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    required: false
  samp_store_dur:
    name: samp_store_dur
    domain_of:
    - agriculture
    - symbiont-associated
    - water
    - wastewater_sludge
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    required: false
  host_symbiont:
    name: host_symbiont
    domain_of:
    - agriculture
    - symbiont-associated
    - plant-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    required: false
  misc_param:
    name: misc_param
    domain_of:
    - agriculture
    - food-farm environment
    - food-food production facility
    - food-animal and animal feed
    - food-human foods
    - symbiont-associated
    - water
    - wastewater_sludge
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    required: false
attributes:
  lat_lon:
    name: lat_lon
    annotations:
      expected_value:
        tag: expected_value
        value: decimal degrees,  limit to 8 decimal points
    description: The geographical origin of the sample as defined by latitude and
      longitude. The values should be reported in decimal degrees and in WGS84 system
    title: geographic location (latitude and longitude)
    examples:
    - value: 50.586825 6.408977
    from_schema: http://w3id.org/mixs
    aliases:
    - geographic location (latitude and longitude)
    is_a: environment field
    string_serialization: '{float} {float}'
    slot_uri: MIXS:0000009
    multivalued: false
    alias: lat_lon
    owner: human-vaginal
    domain_of:
    - agriculture
    - food-farm environment
    - food-food production facility
    - food-animal and animal feed
    - food-human foods
    - symbiont-associated
    - water
    - wastewater_sludge
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - built environment
    - air
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    range: string
  depth:
    name: depth
    annotations:
      expected_value:
        tag: expected_value
        value: measurement value
    description: The vertical distance below local surface, e.g. for sediment or soil
      samples depth is measured from sediment or soil surface, respectively. Depth
      can be reported as an interval for subsurface samples.
    title: depth
    examples:
    - value: 10 meter
    from_schema: http://w3id.org/mixs
    aliases:
    - depth
    is_a: environment field
    slot_uri: MIXS:0000018
    multivalued: false
    alias: depth
    owner: human-vaginal
    domain_of:
    - agriculture
    - food-farm environment
    - food-food production facility
    - food-animal and animal feed
    - food-human foods
    - symbiont-associated
    - water
    - wastewater_sludge
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - built environment
    - air
    - core
    range: quantity value
  alt:
    name: alt
    annotations:
      expected_value:
        tag: expected_value
        value: measurement value
    description: Altitude is a term used to identify heights of objects such as airplanes,
      space shuttles, rockets, atmospheric balloons and heights of places such as
      atmospheric layers and clouds. It is used to measure the height of an object
      which is above the earth's surface. In this context, the altitude measurement
      is the vertical distance between the earth's surface above sea level and the
      sampled position in the air
    title: altitude
    examples:
    - value: 100 meter
    from_schema: http://w3id.org/mixs
    aliases:
    - altitude
    is_a: environment field
    slot_uri: MIXS:0000094
    multivalued: false
    alias: alt
    owner: human-vaginal
    domain_of:
    - agriculture
    - food-farm environment
    - food-food production facility
    - food-animal and animal feed
    - food-human foods
    - symbiont-associated
    - water
    - wastewater_sludge
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - built environment
    - air
    - core
    range: quantity value
  elev:
    name: elev
    annotations:
      expected_value:
        tag: expected_value
        value: measurement value
    description: Elevation of the sampling site is its height above a fixed reference
      point, most commonly the mean sea level. Elevation is mainly used when referring
      to points on the earth's surface, while altitude is used for points above the
      surface, such as an aircraft in flight or a spacecraft in orbit.
    title: elevation
    examples:
    - value: 100 meter
    from_schema: http://w3id.org/mixs
    aliases:
    - elevation
    is_a: environment field
    slot_uri: MIXS:0000093
    multivalued: false
    alias: elev
    owner: human-vaginal
    domain_of:
    - agriculture
    - food-farm environment
    - food-food production facility
    - food-animal and animal feed
    - food-human foods
    - symbiont-associated
    - water
    - wastewater_sludge
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - built environment
    - air
    - core
    range: quantity value
  temp:
    name: temp
    description: Temperature of the sample at the time of sampling.
    title: temperature
    from_schema: http://w3id.org/mixs
    is_a: environment field
    slot_uri: MIXS:0000113
    multivalued: false
    alias: temp
    owner: human-vaginal
    domain_of:
    - agriculture
    - food-farm environment
    - food-food production facility
    - food-animal and animal feed
    - food-human foods
    - symbiont-associated
    - water
    - wastewater_sludge
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - built environment
    - air
    - core
    range: quantity value
    required: false
  geo_loc_name:
    name: geo_loc_name
    annotations:
      expected_value:
        tag: expected_value
        value: 'country or sea name (INSDC or GAZ): region(GAZ), specific location
          name'
    description: The geographical origin of the sample as defined by the country or
      sea name followed by specific region name. Country or sea names should be chosen
      from the INSDC country list (http://insdc.org/country.html), or the GAZ ontology
      (http://purl.bioontology.org/ontology/GAZ)
    title: geographic location (country and/or sea,region)
    examples:
    - value: 'USA: Maryland, Bethesda'
    from_schema: http://w3id.org/mixs
    aliases:
    - geographic location (country and/or sea,region)
    is_a: environment field
    string_serialization: '{term}: {term}, {text}'
    slot_uri: MIXS:0000010
    multivalued: false
    alias: geo_loc_name
    owner: human-vaginal
    domain_of:
    - agriculture
    - food-farm environment
    - food-food production facility
    - food-animal and animal feed
    - food-human foods
    - symbiont-associated
    - water
    - wastewater_sludge
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - built environment
    - air
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    range: string
  collection_date:
    name: collection_date
    annotations:
      expected_value:
        tag: expected_value
        value: date and time
    description: 'The time of sampling, either as an instance (single point in time)
      or interval. In case no exact time is available, the date/time can be right
      truncated i.e. all of these are valid times: 2008-01-23T19:23:10+00:00; 2008-01-23T19:23:10;
      2008-01-23; 2008-01; 2008; Except: 2008-01; 2008 all are ISO8601 compliant'
    title: collection date
    examples:
    - value: 2018-05-11T10:00:00+01:00; 2018-05-11
    from_schema: http://w3id.org/mixs
    aliases:
    - collection date
    is_a: environment field
    slot_uri: MIXS:0000011
    multivalued: false
    alias: collection_date
    owner: human-vaginal
    domain_of:
    - agriculture
    - food-farm environment
    - food-food production facility
    - food-animal and animal feed
    - food-human foods
    - symbiont-associated
    - water
    - wastewater_sludge
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - built environment
    - air
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    range: date
  env_broad_scale:
    name: env_broad_scale
    annotations:
      expected_value:
        tag: expected_value
        value: The major environment type(s) where the sample was collected. Recommend
          subclasses of biome [ENVO:00000428]. Multiple terms can be separated by
          one or more pipes.
    description: 'Report the major environmental system the sample or specimen came
      from. The system(s) identified should have a coarse spatial grain, to provide
      the general environmental context of where the sampling was done (e.g. in the
      desert or a rainforest). We recommend using subclasses of EnvO’s biome class:  http://purl.obolibrary.org/obo/ENVO_00000428.
      EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS'
    title: broad-scale environmental context
    examples:
    - value: oceanic epipelagic zone biome [ENVO:01000033] for annotating a water
        sample from the photic zone in middle of the Atlantic Ocean
    from_schema: http://w3id.org/mixs
    aliases:
    - broad-scale environmental context
    is_a: environment field
    string_serialization: '{termLabel} {[termID]}'
    slot_uri: MIXS:0000012
    multivalued: false
    alias: env_broad_scale
    owner: human-vaginal
    domain_of:
    - agriculture
    - food-farm environment
    - food-food production facility
    - food-animal and animal feed
    - food-human foods
    - symbiont-associated
    - water
    - wastewater_sludge
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - built environment
    - air
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    range: string
  env_local_scale:
    name: env_local_scale
    annotations:
      expected_value:
        tag: expected_value
        value: Environmental entities having causal influences upon the entity at
          time of sampling.
    description: 'Report the entity or entities which are in the sample or specimen’s
      local vicinity and which you believe have significant causal influences on your
      sample or specimen. We recommend using EnvO terms which are of smaller spatial
      grain than your entry for env_broad_scale. Terms, such as anatomical sites,
      from other OBO Library ontologies which interoperate with EnvO (e.g. UBERON)
      are accepted in this field. EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS.'
    title: local environmental context
    examples:
    - value: 'litter layer [ENVO:01000338]; Annotating a pooled sample taken from
        various vegetation layers in a forest consider: canopy [ENVO:00000047]|herb
        and fern layer [ENVO:01000337]|litter layer [ENVO:01000338]|understory [01000335]|shrub
        layer [ENVO:01000336].'
    from_schema: http://w3id.org/mixs
    aliases:
    - local environmental context
    is_a: environment field
    string_serialization: '{termLabel} {[termID]}'
    slot_uri: MIXS:0000013
    multivalued: false
    alias: env_local_scale
    owner: human-vaginal
    domain_of:
    - agriculture
    - food-farm environment
    - food-food production facility
    - food-animal and animal feed
    - food-human foods
    - symbiont-associated
    - water
    - wastewater_sludge
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - built environment
    - air
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    range: string
  env_medium:
    name: env_medium
    annotations:
      expected_value:
        tag: expected_value
        value: The material displaced by the entity at time of sampling. Recommend
          subclasses of environmental material [ENVO:00010483].
    description: 'Report the environmental material(s) immediately surrounding the
      sample or specimen at the time of sampling. We recommend using subclasses of
      ''environmental material'' (http://purl.obolibrary.org/obo/ENVO_00010483). EnvO
      documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS
      . Terms from other OBO ontologies are permissible as long as they reference
      mass/volume nouns (e.g. air, water, blood) and not discrete, countable entities
      (e.g. a tree, a leaf, a table top).'
    title: environmental medium
    examples:
    - value: 'soil [ENVO:00001998]; Annotating a fish swimming in the upper 100 m
        of the Atlantic Ocean, consider: ocean water [ENVO:00002151]. Example: Annotating
        a duck on a pond consider: pond water [ENVO:00002228]|air [ENVO_00002005]'
    from_schema: http://w3id.org/mixs
    aliases:
    - environmental medium
    is_a: environment field
    string_serialization: '{termLabel} {[termID]}'
    slot_uri: MIXS:0000014
    multivalued: false
    alias: env_medium
    owner: human-vaginal
    domain_of:
    - agriculture
    - food-farm environment
    - food-food production facility
    - food-animal and animal feed
    - food-human foods
    - symbiont-associated
    - water
    - wastewater_sludge
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - built environment
    - air
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    range: string
  menarche:
    name: menarche
    description: Date of most recent menstruation
    title: menarche
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000965
    multivalued: false
    alias: menarche
    owner: human-vaginal
    domain_of:
    - human-vaginal
    range: date
    required: false
  sexual_act:
    name: sexual_act
    description: Current sexual partner and frequency of sex
    title: sexual activity
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0000285
    multivalued: false
    alias: sexual_act
    owner: human-vaginal
    domain_of:
    - human-vaginal
    range: string
    required: false
  pregnancy:
    name: pregnancy
    description: Date due of pregnancy
    title: pregnancy
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000966
    multivalued: false
    alias: pregnancy
    owner: human-vaginal
    domain_of:
    - human-vaginal
    range: date
    required: false
  douche:
    name: douche
    description: Date of most recent douche
    title: douche
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000967
    multivalued: false
    alias: douche
    owner: human-vaginal
    domain_of:
    - human-vaginal
    range: date
    required: false
  birth_control:
    name: birth_control
    description: Specification of birth control medication used
    title: birth control
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0000286
    multivalued: false
    alias: birth_control
    owner: human-vaginal
    domain_of:
    - human-vaginal
    range: string
    required: false
  menopause:
    name: menopause
    description: Date of onset of menopause
    title: menopause
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000968
    multivalued: false
    alias: menopause
    owner: human-vaginal
    domain_of:
    - human-vaginal
    range: date
    required: false
  hrt:
    name: hrt
    description: Whether subject had hormone replacement theraphy, and if yes start
      date
    title: HRT
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000969
    multivalued: false
    alias: hrt
    owner: human-vaginal
    domain_of:
    - human-vaginal
    range: date
    required: false
  hysterectomy:
    name: hysterectomy
    description: Specification of whether hysterectomy was performed
    title: hysterectomy
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{boolean}'
    slot_uri: MIXS:0000287
    multivalued: false
    alias: hysterectomy
    owner: human-vaginal
    domain_of:
    - human-vaginal
    range: string
    required: false
  gynecologic_disord:
    name: gynecologic_disord
    description: History of gynecological disorders; can include multiple disorders.
      The terms should be chosen from the DO (Human Disease Ontology) at http://www.disease-ontology.org,
      female reproductive system disease (https://disease-ontology.org/?id=DOID:229).
    title: gynecological disorder
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0000288
    multivalued: true
    alias: gynecologic_disord
    owner: human-vaginal
    domain_of:
    - human-vaginal
    range: string
    required: false
  urogenit_disord:
    name: urogenit_disord
    description: History of urogenital disorders, can include multiple disorders.
      The terms should be chosen from the DO (Human Disease Ontology) at http://www.disease-ontology.org,
      reproductive system disease (https://disease-ontology.org/?id=DOID:15) or urinary
      system disease (https://disease-ontology.org/?id=DOID:18).
    title: urogenital disorder
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0000289
    multivalued: true
    alias: urogenit_disord
    owner: human-vaginal
    domain_of:
    - human-vaginal
    range: string
    required: false
  host_subject_id:
    name: host_subject_id
    description: A unique identifier by which each subject can be referred to, de-identified.
    title: host subject id
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0000861
    multivalued: false
    alias: host_subject_id
    owner: human-vaginal
    domain_of:
    - symbiont-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    range: string
    required: false
  host_age:
    name: host_age
    description: Age of host at the time of sampling; relevant scale depends on species
      and study, e.g. Could be seconds for amoebae or centuries for trees
    title: host age
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000255
    multivalued: false
    alias: host_age
    owner: human-vaginal
    domain_of:
    - agriculture
    - food-farm environment
    - symbiont-associated
    - plant-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    range: quantity value
    required: false
  host_sex:
    name: host_sex
    description: Gender or physical sex of the host.
    title: host sex
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000811
    multivalued: false
    alias: host_sex
    owner: human-vaginal
    domain_of:
    - symbiont-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    range: host_sex_enum
    required: false
  ihmc_medication_code:
    name: ihmc_medication_code
    description: Can include multiple medication codes
    title: IHMC medication code
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000884
    multivalued: true
    alias: ihmc_medication_code
    owner: human-vaginal
    domain_of:
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    range: integer
    required: false
  chem_administration:
    name: chem_administration
    description: List of chemical compounds administered to the host or site where
      sampling occurred, and when (e.g. Antibiotics, n fertilizer, air filter); can
      include multiple compounds. For chemical entities of biological interest ontology
      (chebi) (v 163), http://purl.bioontology.org/ontology/chebi
    title: chemical administration
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{termLabel} {[termID]};{timestamp}'
    slot_uri: MIXS:0000751
    multivalued: true
    alias: chem_administration
    owner: human-vaginal
    domain_of:
    - agriculture
    - food-farm environment
    - symbiont-associated
    - water
    - wastewater_sludge
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    range: string
    required: false
  host_body_site:
    name: host_body_site
    description: Name of body site where the sample was obtained from, such as a specific
      organ or tissue (tongue, lung etc...). For foundational model of anatomy ontology
      (fma) (v 4.11.0) or Uber-anatomy ontology (UBERON) (v releases/2014-06-15) terms,
      please see http://purl.bioontology.org/ontology/FMA or http://purl.bioontology.org/ontology/UBERON
    title: host body site
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{termLabel} {[termID]}'
    slot_uri: MIXS:0000867
    multivalued: false
    alias: host_body_site
    owner: human-vaginal
    domain_of:
    - symbiont-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    range: string
    required: false
  host_body_product:
    name: host_body_product
    description: Substance produced by the body, e.g. Stool, mucus, where the sample
      was obtained from. For foundational model of anatomy ontology (fma) or Uber-anatomy
      ontology (UBERON) terms, please see https://www.ebi.ac.uk/ols/ontologies/fma
      or https://www.ebi.ac.uk/ols/ontologies/uberon
    title: host body product
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{termLabel} {[termID]}'
    slot_uri: MIXS:0000888
    multivalued: false
    alias: host_body_product
    owner: human-vaginal
    domain_of:
    - symbiont-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    range: string
    required: false
  host_tot_mass:
    name: host_tot_mass
    description: Total mass of the host at collection, the unit depends on host
    title: host total mass
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000263
    multivalued: false
    alias: host_tot_mass
    owner: human-vaginal
    domain_of:
    - agriculture
    - food-farm environment
    - symbiont-associated
    - plant-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    range: quantity value
    required: false
  host_height:
    name: host_height
    description: The height of subject
    title: host height
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000264
    multivalued: false
    alias: host_height
    owner: human-vaginal
    domain_of:
    - agriculture
    - food-farm environment
    - symbiont-associated
    - plant-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    range: quantity value
    required: false
  host_diet:
    name: host_diet
    description: Type of diet depending on the host, for animals omnivore, herbivore
      etc., for humans high-fat, meditteranean etc.; can include multiple diet types
    title: host diet
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0000869
    multivalued: true
    alias: host_diet
    owner: human-vaginal
    domain_of:
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    range: string
    required: false
  host_last_meal:
    name: host_last_meal
    description: Content of last meal and time since feeding; can include multiple
      values
    title: host last meal
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text};{duration}'
    slot_uri: MIXS:0000870
    multivalued: true
    alias: host_last_meal
    owner: human-vaginal
    domain_of:
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    range: string
    required: false
  host_family_relation:
    name: host_family_relation
    description: Familial relationships to other hosts in the same study; can include
      multiple relationships
    title: host family relationship
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text};{text}'
    slot_uri: MIXS:0000872
    multivalued: true
    alias: host_family_relation
    owner: human-vaginal
    domain_of:
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    range: string
    required: false
  host_genotype:
    name: host_genotype
    description: Observed genotype
    title: host genotype
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0000365
    multivalued: false
    alias: host_genotype
    owner: human-vaginal
    domain_of:
    - agriculture
    - food-farm environment
    - symbiont-associated
    - plant-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    range: string
    required: false
  host_phenotype:
    name: host_phenotype
    description: Phenotype of human or other host. For phenotypic quality ontology
      (pato) (v 2018-03-27) terms, please see http://purl.bioontology.org/ontology/pato.
      For Human Phenotype Ontology (HP) (v 2018-06-13) please see http://purl.bioontology.org/ontology/HP
    title: host phenotype
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{termLabel} {[termID]}'
    slot_uri: MIXS:0000874
    multivalued: false
    alias: host_phenotype
    owner: human-vaginal
    domain_of:
    - agriculture
    - food-farm environment
    - symbiont-associated
    - plant-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    range: string
    required: false
  host_body_temp:
    name: host_body_temp
    description: Core body temperature of the host when sample was collected
    title: host body temperature
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000274
    multivalued: false
    alias: host_body_temp
    owner: human-vaginal
    domain_of:
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    range: quantity value
    required: false
  host_body_mass_index:
    name: host_body_mass_index
    description: Body mass index, calculated as weight/(height)squared
    title: host body-mass index
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000317
    multivalued: false
    alias: host_body_mass_index
    owner: human-vaginal
    domain_of:
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    range: quantity value
    required: false
  ethnicity:
    name: ethnicity
    description: A category of people who identify with each other, usually on the
      basis of presumed similarities such as a common language, ancestry, history,
      society, culture, nation or social treatment within their residing area. https://en.wikipedia.org/wiki/List_of_contemporary_ethnic_groups
    title: ethnicity
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0000895
    multivalued: true
    alias: ethnicity
    owner: human-vaginal
    domain_of:
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    range: string
    required: false
  host_occupation:
    name: host_occupation
    description: Most frequent job performed by subject
    title: host occupation
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000896
    multivalued: false
    alias: host_occupation
    owner: human-vaginal
    domain_of:
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    range: integer
    required: false
  medic_hist_perform:
    name: medic_hist_perform
    description: Whether full medical history was collected
    title: medical history performed
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{boolean}'
    slot_uri: MIXS:0000897
    multivalued: false
    alias: medic_hist_perform
    owner: human-vaginal
    domain_of:
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    range: string
    required: false
  host_pulse:
    name: host_pulse
    description: Resting pulse, measured as beats per minute
    title: host pulse
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000333
    multivalued: false
    alias: host_pulse
    owner: human-vaginal
    domain_of:
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    range: quantity value
    required: false
  perturbation:
    name: perturbation
    description: Type of perturbation, e.g. chemical administration, physical disturbance,
      etc., coupled with perturbation regimen including how many times the perturbation
      was repeated, how long each perturbation lasted, and the start and end time
      of the entire perturbation period; can include multiple perturbation types
    title: perturbation
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text};{Rn/start_time/end_time/duration}'
    slot_uri: MIXS:0000754
    multivalued: true
    alias: perturbation
    owner: human-vaginal
    domain_of:
    - agriculture
    - food-farm environment
    - food-animal and animal feed
    - food-human foods
    - symbiont-associated
    - water
    - wastewater_sludge
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    range: string
    required: false
  samp_salinity:
    name: samp_salinity
    description: Salinity is the total concentration of all dissolved salts in a liquid
      or solid (in the form of an extract obtained by centrifugation) sample. While
      salinity can be measured by a complete chemical analysis, this method is difficult
      and time consuming. More often, it is instead derived from the conductivity
      measurement. This is known as practical salinity. These derivations compare
      the specific conductance of the sample to a salinity standard such as seawater
    title: sample salinity
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000109
    multivalued: false
    alias: samp_salinity
    owner: human-vaginal
    domain_of:
    - symbiont-associated
    - human-vaginal
    range: quantity value
    required: false
  salinity:
    name: salinity
    description: The total concentration of all dissolved salts in a liquid or solid
      sample. While salinity can be measured by a complete chemical analysis, this
      method is difficult and time consuming. More often, it is instead derived from
      the conductivity measurement. This is known as practical salinity. These derivations
      compare the specific conductance of the sample to a salinity standard such as
      seawater.
    title: salinity
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000183
    multivalued: false
    alias: salinity
    owner: human-vaginal
    domain_of:
    - food-farm environment
    - water
    - wastewater_sludge
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    range: quantity value
    required: false
  oxy_stat_samp:
    name: oxy_stat_samp
    description: Oxygenation status of sample
    title: oxygenation status of sample
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000753
    multivalued: false
    alias: oxy_stat_samp
    owner: human-vaginal
    domain_of:
    - agriculture
    - symbiont-associated
    - water
    - wastewater_sludge
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    range: oxy_stat_samp_enum
    required: false
  organism_count:
    name: organism_count
    description: 'Total cell count of any organism (or group of organisms) per gram,
      volume or area of sample, should include name of organism followed by count.
      The method that was used for the enumeration (e.g. qPCR, atp, mpn, etc.) Should
      also be provided. (example: total prokaryotes; 3.5e7 cells per ml; qpcr)'
    title: organism count
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000103
    multivalued: true
    alias: organism_count
    owner: human-vaginal
    domain_of:
    - agriculture
    - food-farm environment
    - food-food production facility
    - food-animal and animal feed
    - food-human foods
    - symbiont-associated
    - water
    - wastewater_sludge
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - built environment
    - air
    range: organism_count_enum
    required: false
  samp_store_temp:
    name: samp_store_temp
    description: Temperature at which sample was stored, e.g. -80 degree Celsius
    title: sample storage temperature
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000110
    multivalued: false
    alias: samp_store_temp
    owner: human-vaginal
    domain_of:
    - symbiont-associated
    - water
    - wastewater_sludge
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    range: quantity value
    required: false
  samp_store_loc:
    name: samp_store_loc
    description: Location at which sample was stored, usually name of a specific freezer/room
    title: sample storage location
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0000755
    multivalued: false
    alias: samp_store_loc
    owner: human-vaginal
    domain_of:
    - agriculture
    - symbiont-associated
    - water
    - wastewater_sludge
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    range: string
    required: false
  samp_store_dur:
    name: samp_store_dur
    description: Duration for which the sample was stored
    title: sample storage duration
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{duration}'
    slot_uri: MIXS:0000116
    multivalued: false
    alias: samp_store_dur
    owner: human-vaginal
    domain_of:
    - agriculture
    - symbiont-associated
    - water
    - wastewater_sludge
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    range: string
    required: false
  host_symbiont:
    name: host_symbiont
    description: The taxonomic name of the organism(s) found living in mutualistic,
      commensalistic, or parasitic symbiosis with the specific host.
    title: observed host symbionts
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0001298
    multivalued: true
    alias: host_symbiont
    owner: human-vaginal
    domain_of:
    - agriculture
    - symbiont-associated
    - plant-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    range: string
    required: false
  misc_param:
    name: misc_param
    description: Any other measurement performed or parameter collected, that is not
      listed here
    title: miscellaneous parameter
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text};{float} {unit}'
    slot_uri: MIXS:0000752
    multivalued: true
    alias: misc_param
    owner: human-vaginal
    domain_of:
    - agriculture
    - food-farm environment
    - food-food production facility
    - food-animal and animal feed
    - food-human foods
    - symbiont-associated
    - water
    - wastewater_sludge
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    range: string
    required: false