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Food-farmEnvironment

food-farm environment

URI: mixs.vocab:Food-farmEnvironment

Combinations

Slots

MIxS ID Name Multiplicity Description Pattern Info
MIXS:0000009 lat_lon 1..1 The geographical origin of the sample as defined by latitude and longitude. The values should be reported in decimal degrees and in WGS84 system None .
MIXS:0000018 depth 1..1 The vertical distance below local surface, e.g. for sediment or soil samples depth is measured from sediment or soil surface, respectively. Depth can be reported as an interval for subsurface samples. None .
MIXS:0000094 alt 0..1 Altitude is a term used to identify heights of objects such as airplanes, space shuttles, rockets, atmospheric balloons and heights of places such as atmospheric layers and clouds. It is used to measure the height of an object which is above the earth's surface. In this context, the altitude measurement is the vertical distance between the earth's surface above sea level and the sampled position in the air None .
MIXS:0000093 elev 0..1 Elevation of the sampling site is its height above a fixed reference point, most commonly the mean sea level. Elevation is mainly used when referring to points on the earth's surface, while altitude is used for points above the surface, such as an aircraft in flight or a spacecraft in orbit. None .
MIXS:0000113 temp 0..1 Temperature of the sample at the time of sampling. None .
MIXS:0000010 geo_loc_name 1..1 The geographical origin of the sample as defined by the country or sea name followed by specific region name. Country or sea names should be chosen from the INSDC country list (http://insdc.org/country.html), or the GAZ ontology (http://purl.bioontology.org/ontology/GAZ) None .
MIXS:0000011 collection_date 1..1 The time of sampling, either as an instance (single point in time) or interval. In case no exact time is available, the date/time can be right truncated i.e. all of these are valid times: 2008-01-23T19:23:10+00:00; 2008-01-23T19:23:10; 2008-01-23; 2008-01; 2008; Except: 2008-01; 2008 all are ISO8601 compliant None .
MIXS:0000012 env_broad_scale 1..1 Report the major environmental system the sample or specimen came from. The system(s) identified should have a coarse spatial grain, to provide the general environmental context of where the sampling was done (e.g. in the desert or a rainforest). We recommend using subclasses of EnvO’s biome class: http://purl.obolibrary.org/obo/ENVO_00000428. EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS None .
MIXS:0000013 env_local_scale 1..1 Report the entity or entities which are in the sample or specimen’s local vicinity and which you believe have significant causal influences on your sample or specimen. We recommend using EnvO terms which are of smaller spatial grain than your entry for env_broad_scale. Terms, such as anatomical sites, from other OBO Library ontologies which interoperate with EnvO (e.g. UBERON) are accepted in this field. EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS. None .
MIXS:0000014 env_medium 1..1 Report the environmental material(s) immediately surrounding the sample or specimen at the time of sampling. We recommend using subclasses of 'environmental material' (http://purl.obolibrary.org/obo/ENVO_00010483). EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS . Terms from other OBO ontologies are permissible as long as they reference mass/volume nouns (e.g. air, water, blood) and not discrete, countable entities (e.g. a tree, a leaf, a table top). None .
MIXS:0001117 cult_result 0..1 Any result of a bacterial culture experiment reported as a binary assessment such as positive/negative, active/inactive. None .
MIXS:0001151 samp_purpose 0..1 The reason that the sample was collected. None .
MIXS:0001178 food_quality_date 0..1 The date recommended for the use of the product while at peak quality, this date is not a reflection of safety unless used on infant formula this date is not a reflection of safety and is typically labeled on a food product as "best if used by," best by," "use by," or "freeze by." None .
MIXS:0001164 soil_texture_class 0..1 One of the 12 soil texture classes use to describe soil texture based on the relative proportion of different grain sizes of mineral particles [sand (50 um to 2 mm), silt (2 um to 50 um), and clay (<2 um)] in a soil. None .
MIXS:0001081 tillage 0..* Note method(s) used for tilling None .
MIXS:0001141 extr_weather_event 0..* Unusual weather events that may have affected microbial populations. Multiple terms can be separated by pipes, listed in reverse chronological order. None .
MIXS:0001182 food_clean_proc 0..* The process of cleaning food to separate other environmental materials from the food source. Multiple terms can be separated by pipes. None .
MIXS:0001044 growth_habit 0..1 Characteristic shape, appearance or growth form of a plant species None .
MIXS:0001110 farm_water_source 0..* Source of water used on the farm for irrigation of crops or watering of livestock. None .
MIXS:0001176 water_source_shared 0..* Other users sharing access to the same water source. Multiple terms can be separated by one or more pipes. None .
MIXS:0001146 air_flow_impede 0..* Presence of objects in the area that would influence or impede air flow through the air filter. None .
MIXS:0001150 plant_reprod_crop 0..* Plant reproductive part used in the field during planting to start the crop. None .
MIXS:0000318 crop_rotation 0..1 Whether or not crop is rotated, and if yes, rotation schedule None .
MIXS:0000116 samp_stor_dur 0..1 Duration for which the sample was stored. Indicate the duration for which the sample was stored written in ISO 8601 format. None .
MIXS:0001001 ph 0..1 Ph measurement of the sample, or liquid portion of sample, or aqueous phase of the fluid None .
MIXS:0001062 root_med_ph 0..1 pH measurement of the culture rooting medium; e.g. 5.5. None .
MIXS:0001160 soil_pH 0..1 The pH of soil at time of sampling. None .
MIXS:0001173 timepoint 0..1 Time point at which a sample or observation is made or taken from a biomaterial as measured from some reference point. Indicate the timepoint written in ISO 8601 format. None .
MIXS:0001175 water_pH 0..1 pH measurement of the sample, or liquid portion of sample, or aqueous phase of the fluid. None .
MIXS:0000692 conduc 0..1 Electrical conductivity of water None .
MIXS:0000255 host_age 0..1 Age of host at the time of sampling; relevant scale depends on species and study, e.g. Could be seconds for amoebae or centuries for trees None .
MIXS:0000257 host_dry_mass 0..1 Measurement of dry mass None .
MIXS:0000264 host_height 0..1 The height of subject None .
MIXS:0000256 host_length 0..1 The length of subject None .
MIXS:0000263 host_tot_mass 0..1 Total mass of the host at collection, the unit depends on host None .
MIXS:0000100 humidity 0..1 Amount of water vapour in the air, at the time of sampling None .
MIXS:0000183 salinity 0..1 The total concentration of all dissolved salts in a liquid or solid sample. While salinity can be measured by a complete chemical analysis, this method is difficult and time consuming. More often, it is instead derived from the conductivity measurement. This is known as practical salinity. These derivations compare the specific conductance of the sample to a salinity standard such as seawater. None .
MIXS:0000110 samp_stor_temp 0..1 Temperature at which sample was stored, e.g. -80 degree Celsius. None .
MIXS:0001148 season_humidity 0..1 Average humidity of the region throughout the growing season. None .
MIXS:0000645 season_precpt 0..1 The average of all seasonal precipitation values known, or an estimated equivalent value derived by such methods as regional indexes or Isohyetal maps. None .
MIXS:0000643 season_temp 0..1 Mean seasonal temperature None .
MIXS:0000735 size_frac_low 0..1 Refers to the mesh/pore size used to pre-filter/pre-sort the sample. Materials larger than the size threshold are excluded from the sample None .
MIXS:0000736 size_frac_up 0..1 Refers to the mesh/pore size used to retain the sample. Materials smaller than the size threshold are excluded from the sample None .
MIXS:0001158 soil_conductivity 0..1 Conductivity of soil at time of sampling. None .
MIXS:0000112 solar_irradiance 0..1 The amount of solar energy that arrives at a specific area of a surface during a specific time interval None .
MIXS:0000530 tot_nitro_content 0..1 Total nitrogen content of the sample None .
MIXS:0000191 turbidity 0..1 Measure of the amount of cloudiness or haziness in water caused by individual particles None .
MIXS:0000114 ventilation_rate 0..1 Ventilation rate of the system in the sampled premises None .
MIXS:0000118 wind_speed 0..1 Speed of wind measured at the time of sampling None .
MIXS:0001116 crop_yield 0..1 Amount of crop produced per unit or area of land. None .
MIXS:0001163 soil_temp 0..* Temperature of soil at the time of sampling. None .
MIXS:0001174 water_frequency 0..1 Number of water delivery events within a given period of time. None .
MIXS:0001129 animal_group_size 0..1 The number of food animals of the same species that are maintained together as a unit, i.e. a herd or flock. None .
MIXS:0001147 lot_number 0..* A distinctive alpha-numeric identification code assigned by the manufacturer or distributor to a specific quantity of manufactured material or product within a batch. Synonym: Batch Number. The submitter should provide lot number of the item followed by the item name for which the lot number was provided. None .
MIXS:0001144 intended_consumer 0..* Food consumer type, human or animal, for which the food product is produced and marketed. This field accepts terms listed under food consumer group (http://purl.obolibrary.org/obo/FOODON_03510136) or NCBI taxid. None .
MIXS:0000250 host_taxid 0..1 NCBI taxon id of the host. None .
MIXS:0001162 soil_porosity 0..1 Porosity of soil or deposited sediment is volume of voids divided by the total volume of sample. None .
MIXS:0000533 tot_org_carb 0..1 Definition for soil: total organic carbon content of the soil, definition otherwise: total organic carbon content None .
MIXS:0000859 genetic_mod 0..1 Genetic modifications of the genome of an organism, which may occur naturally by spontaneous mutation, or be introduced by some experimental means, e.g. specification of a transgene or the gene knocked-out or details of transient transfection. None .
MIXS:0001106 ph_meth 0..1 Reference or method used in determining ph None .
MIXS:0000341 salinity_meth 0..1 Reference or method used in determining salinity None .
MIXS:0000336 soil_texture_meth 0..1 Reference or method used in determining soil texture None .
MIXS:0000334 soil_type_meth 0..1 Reference or method used in determining soil series name or other lower-level classification None .
MIXS:0000338 tot_nitro_cont_meth 0..1 Reference or method used in determining the total nitrogen None .
MIXS:0000337 tot_org_c_meth 0..1 Reference or method used in determining total organic carbon None .
MIXS:0001177 enrichment_protocol 0..1 The microbiological workflow or protocol followed to test for the presence or enumeration of the target microbial analyte(s). Please provide a PubMed or DOI reference for published protocols. None .
MIXS:0001061 root_cond 0..1 Relevant rooting conditions such as field plot size, sowing density, container dimensions, number of plants per container. None .
MIXS:0001318 host_subspecf_genlin 0..* Information about the genetic distinctness of the host organism below the subspecies level e.g., serovar, serotype, biotype, ecotype, variety, cultivar, or any relevant genetic typing schemes like Group I plasmid. Subspecies should not be recorded in this term, but in the NCBI taxonomy. Supply both the lineage name and the lineage rank separated by a colon, e.g., biovar:abc123. None .
MIXS:0001120 plant_part_maturity 0..1 A description of the stage of development of a plant or plant part based on maturity or ripeness. This field accepts terms listed under degree of plant maturity (http://purl.obolibrary.org/obo/FOODON_03530050). None .
MIXS:0001115 anim_water_method 0..* Description of the equipment or method used to distribute water to livestock. This field accepts termed listed under water delivery equipment (http://opendata.inra.fr/EOL/EOL_0001653). Multiple terms can be separated by pipes. None .
MIXS:0001180 animal_housing 0..* Description of the housing system of the livestock. This field accepts terms listed under terrestrial management housing system (http://opendata.inra.fr/EOL/EOL_0001605). None .
MIXS:0001126 farm_equip 0..* List of equipment used for planting, fertilization, harvesting, irrigation, land levelling, residue management, weeding or transplanting during the growing season. This field accepts terms listed under agricultural implement (http://purl.obolibrary.org/obo/AGRO_00000416). Multiple terms can be separated by pipes. None .
MIXS:0001123 farm_equip_shared 0..* List of planting, growing or harvesting equipment shared with other farms. This field accepts terms listed under agricultural implement (http://purl.obolibrary.org/obo/AGRO_00000416). Multiple terms can be separated by pipes. None .
MIXS:0001127 fertilizer_admin 0..1 Type of fertilizer or amendment added to the soil or water for the purpose of improving substrate health and quality for plant growth. This field accepts terms listed under agronomic fertilizer (http://purl.obolibrary.org/obo/AGRO_00002062). Multiple terms may apply and can be separated by pipes, listing in reverse chronological order. None .
MIXS:0001139 food_source 0..1 Type of plant or animal from which the food product or its major ingredient is derived or a chemical food source [FDA CFSAN 1995]. None .
MIXS:0001137 food_trav_mode 0..* A descriptor for the method of movement of food commodity along the food distribution system. This field accepts terms listed under travel mode (http://purl.obolibrary.org/obo/GENEPIO_0001064). If the proper descrptor is not listed please use text to describe the mode of travel. Multiple terms can be separated by one or more pipes. None .
MIXS:0001111 plant_water_method 0..1 Description of the equipment or method used to distribute water to crops. This field accepts termed listed under irrigation process (http://purl.obolibrary.org/obo/AGRO_00000006). Multiple terms can be separated by pipes. None .
MIXS:0001154 samp_source_mat_cat 0..1 This is the scientific role or category that the subject organism or material has with respect to an investigation. This field accepts terms listed under specimen source material category (http://purl.obolibrary.org/obo/GENEPIO_0001237 or http://purl.obolibrary.org/obo/OBI_0100051). None .
MIXS:0000998 samp_type 1..1 The type of material from which the sample was obtained. For the Hydrocarbon package, samples include types like core, rock trimmings, drill cuttings, piping section, coupon, pigging debris, solid deposit, produced fluid, produced water, injected water, swabs, etc. For the Food Package, samples are usually categorized as food, body products or tissues, or environmental material. This field accepts terms listed under environmental specimen (http://purl.obolibrary.org/obo/GENEPIO_0001246). None .
MIXS:0000829 season 0..1 The season when sampling occurred. Any of the four periods into which the year is divided by the equinoxes and solstices. This field accepts terms listed under season (http://purl.obolibrary.org/obo/NCIT_C94729). None .
MIXS:0001159 soil_cover 0..1 Description of the material covering the sampled soil. This field accepts terms under ENVO:00010483, environmental material. None .
MIXS:0000332 soil_type 0..* Description of the soil type or classification. This field accepts terms under soil (http://purl.obolibrary.org/obo/ENVO_00001998). Multiple terms can be separated by pipes. None .
MIXS:0001057 plant_growth_med 0..1 Specification of the media for growing the plants or tissue cultured samples, e.g. soil, aeroponic, hydroponic, in vitro solid culture medium, in vitro liquid culture medium. Recommended value is a specific value from EO:plant growth medium (follow this link for terms http://purl.obolibrary.org/obo/EO_0007147) or other controlled vocabulary None .
MIXS:0000751 chem_administration 1..* List of chemical compounds administered to the host or site where sampling occurred, and when (e.g. Antibiotics, n fertilizer, air filter); can include multiple compounds. For chemical entities of biological interest ontology (chebi) (v 163), http://purl.bioontology.org/ontology/chebi None .
MIXS:0001114 animal_intrusion 0..* Identification of animals intruding on the sample or sample site including invertebrates (such as pests or pollinators) and vertebrates (such as wildlife or domesticated animals). This field accepts terms under organism (http://purl.obolibrary.org/obo/NCIT_C14250). This field also accepts identification numbers from NCBI under https://www.ncbi.nlm.nih.gov/taxonomy. Multiple terms can be separated by pipes. None .
MIXS:0001118 cult_result_org 0..* Taxonomic information about the cultured organism(s). None .
MIXS:0001119 cult_target 0..* The target microbial analyte in terms of investigation scope. This field accepts terms under organism (http://purl.obolibrary.org/obo/NCIT_C14250). This field also accepts identification numbers from NCBI under https://www.ncbi.nlm.nih.gov/taxonomy. None .
MIXS:0001157 serovar_or_serotype 0..* A characterization of a cell or microorganism based on the antigenic properties of the molecules on its surface. Indicate the name of a serovar or serotype of interest. This field accepts terms under organism (http://purl.obolibrary.org/obo/NCIT_C14250). This field also accepts identification numbers from NCBI under https://www.ncbi.nlm.nih.gov/taxonomy. None .
MIXS:0001167 spikein_org 0..* Taxonomic information about the spike-in organism(s). This field accepts terms under organism (http://purl.obolibrary.org/obo/NCIT_C14250). This field also accepts identification numbers from NCBI under https://www.ncbi.nlm.nih.gov/taxonomy. Multiple terms can be separated by pipes. None .
MIXS:0001168 spikein_serovar 0..* Taxonomic information about the spike-in organism(s) at the serovar or serotype level. This field accepts terms under organism (http://purl.obolibrary.org/obo/NCIT_C14250). This field also accepts identification numbers from NCBI under https://www.ncbi.nlm.nih.gov/taxonomy. Multiple terms can be separated by pipes. None .
MIXS:0001170 spikein_strain 0..* Taxonomic information about the spike-in organism(s) at the strain level. This field accepts terms under organism (http://purl.obolibrary.org/obo/NCIT_C14250). This field also accepts identification numbers from NCBI under https://www.ncbi.nlm.nih.gov/taxonomy. Multiple terms can be separated by pipes. None .
MIXS:0000002 samp_collect_device 0..1 The device used to collect an environmental sample. This field accepts terms listed under environmental sampling device (http://purl.obolibrary.org/obo/ENVO). This field also accepts terms listed under specimen collection device (http://purl.obolibrary.org/obo/GENEPIO_0002094). None .
MIXS:0001121 adjacent_environment 0..* Description of the environmental system or features that are adjacent to the sampling site. This field accepts terms under ecosystem (http://purl.obolibrary.org/obo/ENVO_01001110) and human construction (http://purl.obolibrary.org/obo/ENVO_00000070). Multiple terms can be separated by pipes. None .
MIXS:0001113 animal_feed_equip 0..* Description of the feeding equipment used for livestock. This field accepts terms listed under feed delivery (http://opendata.inra.fr/EOL/EOL_0001757). Multiple terms can be separated by one or more pipes. None .
MIXS:0000247 ances_data 0..1 Information about either pedigree or other ancestral information description (e.g. parental variety in case of mutant or selection), e.g. A/3*B (meaning [(A x B) x B] x B) None .
MIXS:0001130 animal_diet 0..* If the isolate is from a food animal, the type of diet eaten by the food animal. Please list the main food staple and the setting, if appropriate. For a list of acceptable animal feed terms or categories, please see http://www.feedipedia.org. Multiple terms may apply and can be separated by pipes Food product for animal covers foods intended for consumption by domesticated animals. Consult http://purl.obolibrary.org/obo/FOODON_03309997. If the proper descriptor is not listed please use text to describe the food type. Multiple terms can be separated by one or more pipes. If the proper descriptor is not listed please use text to describe the food product type. None
MIXS:0001038 biotic_regm 1..1 Information about treatment(s) involving use of biotic factors, such as bacteria, viruses or fungi. None .
MIXS:0001125 farm_equip_san_freq 0..1 The number of times farm equipment is cleaned. Frequency of cleaning might be on a Daily basis, Weekly, Monthly, Quarterly or Annually. None .
MIXS:0001133 food_harvest_proc 0..* A harvesting process is a process which takes in some food material from an individual or community of plant or animal organisms in a given context and time, and outputs a precursor or consumable food product. This may include a part of an organism or the whole, and may involve killing the organism. None .
MIXS:0001136 food_prod_char 0..* Descriptors of the food production system such as wild caught, free-range, organic, free-range, industrial, dairy, beef. None .
MIXS:0001108 growth_medium 0..1 A liquid or gel containing nutrients, salts, and other factors formulated to support the growth of microorganisms, cells, or plants (National Cancer Institute Thesaurus). The name of the medium used to grow the microorganism. None .
MIXS:0000365 host_genotype 0..1 Observed genotype None .
MIXS:0001179 IFSAC_category 1..* The IFSAC food categorization scheme has five distinct levels to which foods can be assigned, depending upon the type of food. First, foods are assigned to one of four food groups (aquatic animals, land animals, plants, and other). Food groups include increasingly specific food categories; dairy, eggs, meat and poultry, and game are in the land animal food group, and the category meat and poultry is further subdivided into more specific categories of meat (beef, pork, other meat) and poultry (chicken, turkey, other poultry). Finally, foods are differentiated by differences in food processing (such as pasteurized fluid dairy products, unpasteurized fluid dairy products, pasteurized solid and semi-solid dairy products, and unpasteurized solid and semi-solid dairy products. An IFSAC food category chart is available from https://www.cdc.gov/foodsafety/ifsac/projects/food-categorization-scheme.html PMID: 28926300. None .
MIXS:0001145 library_prep_kit 0..1 Packaged kits (containing adapters, indexes, enzymes, buffers etc.), tailored for specific sequencing workflows, which allow the simplified preparation of sequencing-ready libraries for small genomes, amplicons, and plasmids. None .
MIXS:0001337 prod_label_claims 0..* Labeling claims containing descriptors such as wild caught, free-range, organic, free-range, industrial, hormone-free, antibiotic free, cage free. Can include more than one term, separated by ";" None .
MIXS:0001161 rel_location 0..1 Location of sampled soil to other parts of the farm e.g. under crop plant, near irrigation ditch, from the dirt road. None .
MIXS:0001152 repository_name 0..* The name of the institution where the sample or DNA extract is held or "sample not available" if the sample was used in its entirety for analysis or otherwise not retained. None .
MIXS:0001153 samp_pooling 0..* Physical combination of several instances of like material, e.g. RNA extracted from samples or dishes of cell cultures into one big aliquot of cells. Please provide a short description of the samples that were pooled. None .
MIXS:0001155 sequencing_kit 0..1 Pre-filled, ready-to-use reagent cartridges. Used to produce improved chemistry, cluster density and read length as well as improve quality (Q) scores. Reagent components are encoded to interact with the sequencing system to validate compatibility with user-defined applications. Indicate name of the sequencing kit. None .
MIXS:0001156 sequencing_location 0..1 The location the sequencing run was performed. Indicate the name of the lab or core facility where samples were sequenced. None .
MIXS:0000756 ventilation_type 0..1 Ventilation system used in the sampled premises None .
MIXS:0001122 water_source_adjac 0..* Description of the environmental features that are adjacent to the farm water source. This field accepts terms under ecosystem (http://purl.obolibrary.org/obo/ENVO_01001110) and human construction (http://purl.obolibrary.org/obo/ENVO_00000070). Multiple terms can be separated by pipes. None .
MIXS:0000757 wind_direction 0..1 Wind direction is the direction from which a wind originates None .
MIXS:0001124 farm_equip_san 0..* Method used to sanitize growing and harvesting equipment. This can including type and concentration of sanitizing solution. Multiple terms can be separated by one or more pipes. None .
MIXS:0001171 spikein_antibiotic 0..* Antimicrobials used in research study to assess effects of exposure on microbiome of a specific site. Please list antimicrobial, common name and/or class and concentration used for spike-in. None .
MIXS:0001172 spikein_metal 0..* Heavy metals used in research study to assess effects of exposure on microbiome of a specific site. Please list heavy metals and concentration used for spike-in. None .
MIXS:0000108 air_PM_concen 0..* Concentration of substances that remain suspended in the air, and comprise mixtures of organic and inorganic substances (PM10 and PM2.5); can report multiple PM's by entering numeric values preceded by name of PM None .
MIXS:0000752 misc_param 0..* Any other measurement performed or parameter collected, that is not listed here None .
MIXS:0000577 root_med_carbon 0..1 Source of organic carbon in the culture rooting medium; e.g. sucrose. None .
MIXS:0000578 root_med_macronutr 0..1 Measurement of the culture rooting medium macronutrients (N,P, K, Ca, Mg, S); e.g. KH2PO4 (170 mg/L). None .
MIXS:0000579 root_med_micronutr 0..1 Measurement of the culture rooting medium micronutrients (Fe, Mn, Zn, B, Cu, Mo); e.g. H3BO3 (6.2 mg/L). None .
MIXS:0000103 organism_count 0..* Total cell count of any organism (or group of organisms) per gram, volume or area of sample, should include name of organism followed by count. The method that was used for the enumeration (e.g. qPCR, atp, mpn, etc.) Should also be provided. (example: total prokaryotes; 3.5e7 cells per ml; qpcr). None .
MIXS:0000103 spikein_count 0..1 Total cell count of any organism (or group of organisms) per gram, volume or area of sample, should include name of organism followed by count. The method that was used for the enumeration (e.g. qPCR, atp, mpn, etc.) should also be provided (example: total prokaryotes; 3.5e7 cells per ml; qPCR). None .
MIXS:0000754 perturbation 0..* Type of perturbation, e.g. chemical administration, physical disturbance, etc., coupled with perturbation regimen including how many times the perturbation was repeated, how long each perturbation lasted, and the start and end time of the entire perturbation period; can include multiple perturbation types None .
MIXS:0000874 host_phenotype 0..1 Phenotype of human or other host. For phenotypic quality ontology (pato) (v 2018-03-27) terms, please see http://purl.bioontology.org/ontology/pato. For Human Phenotype Ontology (HP) (v 2018-06-13) please see http://purl.bioontology.org/ontology/HP. None .
MIXS:0001052 mechanical_damage 0..* Information about any mechanical damage exerted on the plant; can include multiple damages and sites None .
MIXS:0000315 previous_land_use 0..1 Previous land use and dates None .
MIXS:0001131 food_contact_surf 0..* The specific container or coating materials in direct contact with the food. Multiple values can be assigned. This field accepts terms listed under food contact surface (http://purl.obolibrary.org/obo/FOODON_03500010). None .
MIXS:0001132 food_contain_wrap 0..1 Type of container or wrapping defined by the main container material, the container form, and the material of the liner lids or ends. Also type of container or wrapping by form; prefer description by material first, then by form. This field accepts terms listed under food container or wrapping (http://purl.obolibrary.org/obo/FOODON_03490100). None .
MIXS:0001134 food_pack_medium 0..* The medium in which the food is packed for preservation and handling or the medium surrounding homemade foods, e.g., peaches cooked in sugar syrup. The packing medium may provide a controlled environment for the food. It may also serve to improve palatability and consumer appeal. This includes edible packing media (e.g. fruit juice), gas other than air (e.g. carbon dioxide), vacuum packed, or packed with aerosol propellant. This field accepts terms under food packing medium (http://purl.obolibrary.org/obo/FOODON_03480020). Multiple terms may apply and can be separated by pipes. None .
MIXS:0001135 food_preserv_proc 0..* The methods contributing to the prevention or retardation of microbial, enzymatic or oxidative spoilage and thus to the extension of shelf life. This field accepts terms listed under food preservation process (http://purl.obolibrary.org/obo/FOODON_03470107). None .
MIXS:0001184 food_product_type 1..* A food product type is a class of food products that is differentiated by its food composition (e.g., single- or multi-ingredient), processing and/or consumption characteristics. This does not include brand name products but it may include generic food dish categories. This field accepts terms under food product type (http://purl.obolibrary.org/obo/FOODON:03400361). For terms related to food product for an animal, consult food product for animal (http://purl.obolibrary.org/obo/FOODON_03309997). If the proper descriptor is not listed please use text to describe the food type. Multiple terms can be separated by one or more pipes. None .
MIXS:0001138 food_trav_vehic 0..* A descriptor for the mobile machine which is used to transport food commodities along the food distribution system. This field accepts terms listed under vehicle (http://purl.obolibrary.org/obo/ENVO_01000604). If the proper descrptor is not listed please use text to describe the mode of travel. Multiple terms can be separated by one or more pipes. None .
MIXS:0001140 food_treat_proc 0..* Used to specifically characterize a food product based on the treatment or processes applied to the product or any indexed ingredient. The processes include adding, substituting or removing components or modifying the food or component, e.g., through fermentation. Multiple values can be assigned. This fields accepts terms listed under food treatment process (http://purl.obolibrary.org/obo/FOODON_03460111). None .
MIXS:0001149 part_plant_animal 0..* The anatomical part of the organism being involved in food production or consumption; e.g., a carrot is the root of the plant (root vegetable). This field accepts terms listed under part of plant or animal (http://purl.obolibrary.org/obo/FOODON_03420116). None .
MIXS:0001169 spikein_growth_med 0..* A liquid or gel containing nutrients, salts, and other factors formulated to support the growth of microorganisms, cells, or plants (National Cancer Institute Thesaurus). A growth medium is a culture medium which has the disposition to encourage growth of particular bacteria to the exclusion of others in the same growth environment. In this case, list the culture medium used to propagate the spike-in bacteria during preparation of spike-in inoculum. This field accepts terms listed under microbiological culture medium (http://purl.obolibrary.org/obo/MICRO_0000067). If the proper descriptor is not listed please use text to describe the spike in growth media. None .
MIXS:0001181 cult_isol_date 0..1 A culture isolation date is a date-time entity marking the end of a process in which a sample yields a positive result for the target microbial analyte(s) in the form of an isolated colony or colonies. None .
MIXS:0001142 date_extr_weath 0..* Date of unusual weather events that may have affected microbial populations. Multiple terms can be separated by pipes, listed in reverse chronological order. None .
MIXS:0001128 fertilizer_date 0..1 Date of administration of soil amendment or fertilizer. Multiple terms may apply and can be separated by pipes, listing in reverse chronological order. None .

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Identifier and Mapping Information