Extension: hydrocarbon resources-fluids/swabs (HydrocarbonResourcesFluidsSwabs)
A collection of terms appropriate when collecting samples and sequencing samples obtained from environments pertaining to hydrocarbon resources, specifically run-off liquids samples and swabs.
Terms
MIXS ID | Name | Cardinality and Range | Description |
---|---|---|---|
MIXS:0001107 | samp_name | 1 String |
A local identifier or name that for the material sample used for extracting n... |
MIXS:0000092 | project_name | 1 String |
Name of the project within which the sequencing was organized |
MIXS:0000988 | hcr | 1 HcrEnum |
Main Hydrocarbon Resource type |
MIXS:0000989 | hc_produced | 1 HcProducedEnum |
Main hydrocarbon type produced from resource (i |
MIXS:0000290 | basin | 1 String |
Name of the basin (e |
MIXS:0000291 | field | 0..1 recommended String |
Name of the hydrocarbon field (e |
MIXS:0000303 | reservoir | 0..1 recommended String |
Name of the reservoir (e |
MIXS:0000393 | hcr_temp | 0..1 recommended String |
Original temperature of the hydrocarbon resource |
MIXS:0000394 | tvdss_of_hcr_temp | 0..1 String |
True vertical depth subsea (TVDSS) of the hydrocarbon resource where the orig... |
MIXS:0000395 | hcr_pressure | 0..1 String |
Original pressure of the hydrocarbon resource |
MIXS:0000397 | tvdss_of_hcr_press | 0..1 String |
True vertical depth subsea (TVDSS) of the hydrocarbon resource where the orig... |
MIXS:0000990 | lithology | 0..1 recommended LithologyEnum |
Hydrocarbon resource main lithology (Additional information: http://petrowiki |
MIXS:0000992 | depos_env | 0..1 recommended DeposEnvEnum |
Main depositional environment (https://en |
MIXS:0000993 | hcr_geol_age | 0..1 recommended GeolAgeEnum |
Geological age of hydrocarbon resource (Additional info: https://en |
MIXS:0000406 | hcr_fw_salinity | 0..1 recommended String |
Original formation water salinity (prior to secondary recovery e |
MIXS:0000407 | sulfate_fw | 0..1 recommended String |
Original sulfate concentration in the hydrocarbon resource |
MIXS:0000408 | vfa_fw | 0..1 recommended String |
Original volatile fatty acid concentration in the hydrocarbon resource |
MIXS:0001008 | prod_start_date | 0..1 recommended Datetime |
Date of field's first production |
MIXS:0000452 | prod_rate | 0..1 recommended String |
Oil and/or gas production rates per well (e |
MIXS:0000453 | water_prod_rate | 0..1 recommended String |
Water production rates per well (e |
MIXS:0000454 | water_cut | 1 String |
Current amount of water (%) in a produced fluid stream; or the average of the... |
MIXS:0000455 | iwf | 1 Float |
Proportion of the produced fluids derived from injected water at the time of ... |
MIXS:0001009 | add_recov_method | 1 String |
Additional (i |
MIXS:0001010 | iw_bt_date_well | 0..1 Datetime |
Injection water breakthrough date per well following a secondary and/or terti... |
MIXS:0001011 | biocide | 0..1 recommended String |
List of biocides (commercial name of product and supplier) and date of admini... |
MIXS:0000456 | biocide_admin_method | 0..1 recommended String |
Method of biocide administration (dose, frequency, duration, time elapsed bet... |
MIXS:0001012 | chem_treatment | 0..1 String |
List of chemical compounds administered upstream the sampling location where ... |
MIXS:0000457 | chem_treat_method | 0..1 String |
Method of chemical administration(dose, frequency, duration, time elapsed bet... |
MIXS:0000136 | samp_loc_corr_rate | 0..1 recommended String |
Metal corrosion rate is the speed of metal deterioration due to environmental... |
MIXS:0000296 | samp_well_name | 0..1 recommended String |
Name of the well (e |
MIXS:0000297 | win | 0..1 recommended String |
A unique identifier of a well or wellbore |
MIXS:0000998 | samp_type | 1 String |
The type of material from which the sample was obtained |
MIXS:0000999 | samp_subtype | 0..1 recommended SampSubtypeEnum |
Name of sample sub-type |
MIXS:0001015 | samp_collect_point | 1 SampCollectPointEnum |
Sampling point on the asset were sample was collected (e |
MIXS:0000113 | temp | 1 String |
Temperature of the sample at the time of sampling |
MIXS:0000412 | pressure | 0..1 String |
Pressure to which the sample is subject to, in atmospheres |
MIXS:0000753 | oxy_stat_samp | 0..1 OxyStatSampEnum |
Oxygenation status of sample |
MIXS:0000463 | samp_preserv | 0..1 String |
Preservative added to the sample (e |
MIXS:0000410 | samp_transport_cond | 0..1 String |
Sample transport duration (in days or hrs) and temperature the sample was exp... |
MIXS:0000110 | samp_store_temp | 0..1 String |
Temperature at which sample was stored, e |
MIXS:0000116 | samp_store_dur | 0..1 String |
Duration for which the sample was stored |
MIXS:0000755 | samp_store_loc | 0..1 String |
Location at which sample was stored, usually name of a specific freezer/room |
MIXS:0000111 | samp_vol_we_dna_ext | 0..1 recommended String |
Volume (ml) or mass (g) of total collected sample processed for DNA extractio... |
MIXS:0000103 | organism_count | * recommended String |
Total cell count of any organism (or group of organisms) per gram, volume or ... |
MIXS:0000099 | org_count_qpcr_info | 0..1 String |
If qpcr was used for the cell count, the target gene name, the primer sequenc... |
MIXS:0001001 | ph | 0..1 recommended Float |
Ph measurement of the sample, or liquid portion of sample, or aqueous phase o... |
MIXS:0000183 | salinity | 0..1 String |
The total concentration of all dissolved salts in a liquid or solid sample |
MIXS:0000421 | alkalinity | 0..1 String |
Alkalinity, the ability of a solution to neutralize acids to the equivalence ... |
MIXS:0000298 | alkalinity_method | 0..1 String |
Method used for alkalinity measurement |
MIXS:0000423 | sulfate | 1 String |
Concentration of sulfate in the sample |
MIXS:0000424 | sulfide | 1 String |
Concentration of sulfide in the sample |
MIXS:0000419 | tot_sulfur | 0..1 recommended String |
Concentration of total sulfur in the sample |
MIXS:0000425 | nitrate | 1 String |
Concentration of nitrate in the sample |
MIXS:0000426 | nitrite | 0..1 recommended String |
Concentration of nitrite in the sample |
MIXS:0000427 | ammonium | 0..1 recommended String |
Concentration of ammonium in the sample |
MIXS:0000102 | tot_nitro | 0..1 String |
Total nitrogen concentration of water samples, calculated by: total nitrogen ... |
MIXS:0000139 | diss_iron | 0..1 recommended String |
Concentration of dissolved iron in the sample |
MIXS:0000428 | sodium | 0..1 String |
Sodium concentration in the sample |
MIXS:0000429 | chloride | 0..1 String |
Concentration of chloride in the sample |
MIXS:0000430 | potassium | 0..1 String |
Concentration of potassium in the sample |
MIXS:0000431 | magnesium | 0..1 String |
Concentration of magnesium in the sample |
MIXS:0000432 | calcium | 0..1 String |
Concentration of calcium in the sample |
MIXS:0000105 | tot_iron | 0..1 recommended String |
Concentration of total iron in the sample |
MIXS:0000433 | diss_org_carb | 0..1 String |
Concentration of dissolved organic carbon in the sample, liquid portion of th... |
MIXS:0000434 | diss_inorg_carb | 0..1 String |
Dissolved inorganic carbon concentration in the sample, typically measured af... |
MIXS:0000106 | diss_inorg_phosp | 0..1 recommended String |
Concentration of dissolved inorganic phosphorus in the sample |
MIXS:0000117 | tot_phosp | 0..1 String |
Total phosphorus concentration in the sample, calculated by: total phosphorus... |
MIXS:0000150 | suspend_solids | * String |
Concentration of substances including a wide variety of material, such as sil... |
MIXS:0000435 | density | 0..1 String |
Density of the sample, which is its mass per unit volume (aka volumetric mass... |
MIXS:0000436 | diss_carb_dioxide | 0..1 String |
Concentration of dissolved carbon dioxide in the sample or liquid portion of ... |
MIXS:0000438 | diss_oxygen_fluid | 0..1 String |
Concentration of dissolved oxygen in the oil field produced fluids as it cont... |
MIXS:0000152 | vfa | 0..1 recommended String |
Concentration of Volatile Fatty Acids in the sample |
MIXS:0000153 | benzene | 0..1 recommended String |
Concentration of benzene in the sample |
MIXS:0000154 | toluene | 0..1 recommended String |
Concentration of toluene in the sample |
MIXS:0000155 | ethylbenzene | 0..1 recommended String |
Concentration of ethylbenzene in the sample |
MIXS:0000156 | xylene | 0..1 recommended String |
Concentration of xylene in the sample |
MIXS:0000157 | api | 1 String |
API gravity is a measure of how heavy or light a petroleum liquid is compared... |
MIXS:0000120 | tan | 0..1 recommended String |
Total Acid Number (TAN) is a measurement of acidity that is determined by th... |
MIXS:0000126 | viscosity | 0..1 String |
A measure of oil's resistance to gradual deformation by shear stress or t... |
MIXS:0000127 | pour_point | 0..1 String |
Temperature at which a liquid becomes semi solid and loses its flow character... |
MIXS:0000131 | saturates_pc | 0..1 recommended String |
Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis method that d... |
MIXS:0000133 | aromatics_pc | 0..1 recommended String |
Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis method that d... |
MIXS:0000134 | resins_pc | 0..1 recommended String |
Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis method that d... |
MIXS:0000135 | asphaltenes_pc | 0..1 recommended String |
Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis method that d... |
MIXS:0000752 | misc_param | * String |
Any other measurement performed or parameter collected, that is not listed he... |
MIXS:0000300 | additional_info | 0..1 String |
Information that doesn't fit anywhere else |
Aliases
- MIxS-HCR (hydrocarbon resources-fluids/swabs)
Annotations
- use_cases: The microbial characterization of hydrocarbon occurrences, defined as the natural and artificial environmental features that are rich in hydrocarbons, from hydrocarbon resource fluids.
LinkML Source
Direct
name: HydrocarbonResourcesFluidsSwabs
annotations:
use_cases:
tag: use_cases
value: The microbial characterization of hydrocarbon occurrences, defined as
the natural and artificial environmental features that are rich in hydrocarbons,
from hydrocarbon resource fluids.
description: A collection of terms appropriate when collecting samples and sequencing
samples obtained from environments pertaining to hydrocarbon resources, specifically
run-off liquids samples and swabs.
title: hydrocarbon resources-fluids/swabs
from_schema: https://w3id.org/mixs
aliases:
- MIxS-HCR (hydrocarbon resources-fluids/swabs)
is_a: Extension
slots:
- samp_name
- project_name
- hcr
- hc_produced
- basin
- field
- reservoir
- hcr_temp
- tvdss_of_hcr_temp
- hcr_pressure
- tvdss_of_hcr_press
- lithology
- depos_env
- hcr_geol_age
- hcr_fw_salinity
- sulfate_fw
- vfa_fw
- prod_start_date
- prod_rate
- water_prod_rate
- water_cut
- iwf
- add_recov_method
- iw_bt_date_well
- biocide
- biocide_admin_method
- chem_treatment
- chem_treat_method
- samp_loc_corr_rate
- samp_well_name
- win
- samp_type
- samp_subtype
- samp_collect_point
- temp
- pressure
- oxy_stat_samp
- samp_preserv
- samp_transport_cond
- samp_store_temp
- samp_store_dur
- samp_store_loc
- samp_vol_we_dna_ext
- organism_count
- org_count_qpcr_info
- ph
- salinity
- alkalinity
- alkalinity_method
- sulfate
- sulfide
- tot_sulfur
- nitrate
- nitrite
- ammonium
- tot_nitro
- diss_iron
- sodium
- chloride
- potassium
- magnesium
- calcium
- tot_iron
- diss_org_carb
- diss_inorg_carb
- diss_inorg_phosp
- tot_phosp
- suspend_solids
- density
- diss_carb_dioxide
- diss_oxygen_fluid
- vfa
- benzene
- toluene
- ethylbenzene
- xylene
- api
- tan
- viscosity
- pour_point
- saturates_pc
- aromatics_pc
- resins_pc
- asphaltenes_pc
- misc_param
- additional_info
slot_usage:
ammonium:
name: ammonium
recommended: true
depos_env:
name: depos_env
examples:
- value: Marine - Reef
diss_inorg_phosp:
name: diss_inorg_phosp
recommended: true
hcr_temp:
name: hcr_temp
recommended: true
nitrate:
name: nitrate
required: true
nitrite:
name: nitrite
recommended: true
organism_count:
name: organism_count
examples:
- value: total prokaryotes;3.5e7 cells per milliliter;qPCR
recommended: true
ph:
name: ph
recommended: true
samp_vol_we_dna_ext:
name: samp_vol_we_dna_ext
recommended: true
sulfate:
name: sulfate
required: true
sulfate_fw:
name: sulfate_fw
recommended: true
sulfide:
name: sulfide
required: true
temp:
name: temp
required: true
vfa_fw:
name: vfa_fw
recommended: true
class_uri: MIXS:0016016
Induced
name: HydrocarbonResourcesFluidsSwabs
annotations:
use_cases:
tag: use_cases
value: The microbial characterization of hydrocarbon occurrences, defined as
the natural and artificial environmental features that are rich in hydrocarbons,
from hydrocarbon resource fluids.
description: A collection of terms appropriate when collecting samples and sequencing
samples obtained from environments pertaining to hydrocarbon resources, specifically
run-off liquids samples and swabs.
title: hydrocarbon resources-fluids/swabs
from_schema: https://w3id.org/mixs
aliases:
- MIxS-HCR (hydrocarbon resources-fluids/swabs)
is_a: Extension
slot_usage:
ammonium:
name: ammonium
recommended: true
depos_env:
name: depos_env
examples:
- value: Marine - Reef
diss_inorg_phosp:
name: diss_inorg_phosp
recommended: true
hcr_temp:
name: hcr_temp
recommended: true
nitrate:
name: nitrate
required: true
nitrite:
name: nitrite
recommended: true
organism_count:
name: organism_count
examples:
- value: total prokaryotes;3.5e7 cells per milliliter;qPCR
recommended: true
ph:
name: ph
recommended: true
samp_vol_we_dna_ext:
name: samp_vol_we_dna_ext
recommended: true
sulfate:
name: sulfate
required: true
sulfate_fw:
name: sulfate_fw
recommended: true
sulfide:
name: sulfide
required: true
temp:
name: temp
required: true
vfa_fw:
name: vfa_fw
recommended: true
attributes:
samp_name:
name: samp_name
annotations:
Preferred_unit:
tag: Preferred_unit
value: ''
description: A local identifier or name that for the material sample used for
extracting nucleic acids, and subsequent sequencing. It can refer either to
the original material collected or to any derived sub-samples. It can have any
format, but we suggest that you make it concise, unique and consistent within
your lab, and as informative as possible. INSDC requires every sample name from
a single Submitter to be unique. Use of a globally unique identifier for the
field source_mat_id is recommended in addition to sample_name
title: sample name
examples:
- value: ISDsoil1
in_subset:
- investigation
from_schema: https://w3id.org/mixs
keywords:
- sample
slot_uri: MIXS:0001107
alias: samp_name
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- Air
- BuiltEnvironment
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- WastewaterSludge
- Water
range: string
required: true
project_name:
name: project_name
description: Name of the project within which the sequencing was organized
title: project name
examples:
- value: Forest soil metagenome
in_subset:
- investigation
from_schema: https://w3id.org/mixs
keywords:
- project
slot_uri: MIXS:0000092
alias: project_name
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- Air
- BuiltEnvironment
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- WastewaterSludge
- Water
range: string
required: true
hcr:
name: hcr
description: Main Hydrocarbon Resource type. The term "Hydrocarbon Resource" HCR
defined as a natural environmental feature containing large amounts of hydrocarbons
at high concentrations potentially suitable for commercial exploitation. This
term should not be confused with the Hydrocarbon Occurrence term which also
includes hydrocarbon-rich environments with currently limited commercial interest
such as seeps, outcrops, gas hydrates etc. If "other" is specified, please propose
entry in "additional info" field
title: hydrocarbon resource type
examples:
- value: Oil Sand
from_schema: https://w3id.org/mixs
keywords:
- hydrocarbon
- resource
- type
slot_uri: MIXS:0000988
alias: hcr
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
range: HcrEnum
required: true
hc_produced:
name: hc_produced
description: Main hydrocarbon type produced from resource (i.e. Oil, gas, condensate,
etc). If "other" is specified, please propose entry in "additional info" field
title: hydrocarbon type produced
examples:
- value: Gas
from_schema: https://w3id.org/mixs
keywords:
- hydrocarbon
- type
slot_uri: MIXS:0000989
alias: hc_produced
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
range: HcProducedEnum
required: true
basin:
name: basin
description: Name of the basin (e.g. Campos)
title: basin name
examples:
- value: Campos
from_schema: https://w3id.org/mixs
slot_uri: MIXS:0000290
alias: basin
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
range: string
required: true
field:
name: field
description: Name of the hydrocarbon field (e.g. Albacora)
title: field name
from_schema: https://w3id.org/mixs
slot_uri: MIXS:0000291
alias: field
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
range: string
recommended: true
reservoir:
name: reservoir
description: Name of the reservoir (e.g. Carapebus)
title: reservoir name
from_schema: https://w3id.org/mixs
slot_uri: MIXS:0000303
alias: reservoir
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
range: string
recommended: true
hcr_temp:
name: hcr_temp
annotations:
Preferred_unit:
tag: Preferred_unit
value: degree Celsius
description: Original temperature of the hydrocarbon resource
title: hydrocarbon resource original temperature
examples:
- value: 150-295 degree Celsius
from_schema: https://w3id.org/mixs
keywords:
- hydrocarbon
- resource
- temperature
slot_uri: MIXS:0000393
alias: hcr_temp
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
range: string
recommended: true
pattern: ^[-+]?[0-9]*\.?[0-9]+ *- *[-+]?[0-9]*\.?[0-9]+ ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{float} *- *{float} {unit}$
interpolated: true
partial_match: true
tvdss_of_hcr_temp:
name: tvdss_of_hcr_temp
annotations:
Preferred_unit:
tag: Preferred_unit
value: meter
description: True vertical depth subsea (TVDSS) of the hydrocarbon resource where
the original temperature was measured (e.g. 1345 m)
title: depth (TVDSS) of hydrocarbon resource temperature
from_schema: https://w3id.org/mixs
keywords:
- depth
- hydrocarbon
- resource
- temperature
slot_uri: MIXS:0000394
alias: tvdss_of_hcr_temp
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
hcr_pressure:
name: hcr_pressure
annotations:
Preferred_unit:
tag: Preferred_unit
value: atmosphere, kilopascal
description: Original pressure of the hydrocarbon resource
title: hydrocarbon resource original pressure
from_schema: https://w3id.org/mixs
keywords:
- hydrocarbon
- pressure
- resource
slot_uri: MIXS:0000395
alias: hcr_pressure
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ *- *[-+]?[0-9]*\.?[0-9]+ ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{float} *- *{float} {unit}$
interpolated: true
partial_match: true
tvdss_of_hcr_press:
name: tvdss_of_hcr_press
annotations:
Preferred_unit:
tag: Preferred_unit
value: meter
description: True vertical depth subsea (TVDSS) of the hydrocarbon resource where
the original pressure was measured (e.g. 1578 m)
title: depth (TVDSS) of hydrocarbon resource pressure
from_schema: https://w3id.org/mixs
keywords:
- depth
- hydrocarbon
- pressure
- resource
slot_uri: MIXS:0000397
alias: tvdss_of_hcr_press
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
lithology:
name: lithology
description: 'Hydrocarbon resource main lithology (Additional information: http://petrowiki.org/Lithology_and_rock_type_determination).
If "other" is specified, please propose entry in "additional info" field'
title: lithology
examples:
- value: Volcanic
from_schema: https://w3id.org/mixs
keywords:
- lithology
slot_uri: MIXS:0000990
alias: lithology
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
range: LithologyEnum
recommended: true
depos_env:
name: depos_env
description: Main depositional environment (https://en.wikipedia.org/wiki/Depositional_environment).
If "other" is specified, please propose entry in "additional info" field
title: depositional environment
examples:
- value: Marine - Reef
from_schema: https://w3id.org/mixs
keywords:
- environment
slot_uri: MIXS:0000992
alias: depos_env
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
range: DeposEnvEnum
recommended: true
hcr_geol_age:
name: hcr_geol_age
description: 'Geological age of hydrocarbon resource (Additional info: https://en.wikipedia.org/wiki/Period_(geology)).
If "other" is specified, please propose entry in "additional info" field'
title: hydrocarbon resource geological age
examples:
- value: Silurian
from_schema: https://w3id.org/mixs
keywords:
- age
- hydrocarbon
- resource
slot_uri: MIXS:0000993
alias: hcr_geol_age
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
range: GeolAgeEnum
recommended: true
hcr_fw_salinity:
name: hcr_fw_salinity
annotations:
Preferred_unit:
tag: Preferred_unit
value: milligram per liter
description: Original formation water salinity (prior to secondary recovery e.g.
Waterflooding) expressed as TDS
title: formation water salinity
from_schema: https://w3id.org/mixs
keywords:
- salinity
- water
slot_uri: MIXS:0000406
alias: hcr_fw_salinity
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
range: string
recommended: true
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
sulfate_fw:
name: sulfate_fw
annotations:
Preferred_unit:
tag: Preferred_unit
value: milligram per liter
description: Original sulfate concentration in the hydrocarbon resource
title: sulfate in formation water
from_schema: https://w3id.org/mixs
keywords:
- sulfate
- water
slot_uri: MIXS:0000407
alias: sulfate_fw
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
range: string
recommended: true
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
vfa_fw:
name: vfa_fw
annotations:
Preferred_unit:
tag: Preferred_unit
value: milligram per liter
description: Original volatile fatty acid concentration in the hydrocarbon resource
title: vfa in formation water
from_schema: https://w3id.org/mixs
keywords:
- water
slot_uri: MIXS:0000408
alias: vfa_fw
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
range: string
recommended: true
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
prod_start_date:
name: prod_start_date
description: Date of field's first production
title: production start date
examples:
- value: '2013-03-25T12:42:31+01:00'
from_schema: https://w3id.org/mixs
keywords:
- date
- production
- start
slot_uri: MIXS:0001008
alias: prod_start_date
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- HydrocarbonResourcesFluidsSwabs
range: datetime
recommended: true
prod_rate:
name: prod_rate
annotations:
Preferred_unit:
tag: Preferred_unit
value: cubic meter per day
description: Oil and/or gas production rates per well (e.g. 524 m3 / day)
title: production rate
from_schema: https://w3id.org/mixs
keywords:
- production
- rate
slot_uri: MIXS:0000452
alias: prod_rate
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- HydrocarbonResourcesFluidsSwabs
range: string
recommended: true
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
water_prod_rate:
name: water_prod_rate
annotations:
Preferred_unit:
tag: Preferred_unit
value: cubic meter per day
description: Water production rates per well (e.g. 987 m3 / day)
title: water production rate
from_schema: https://w3id.org/mixs
keywords:
- production
- rate
- water
slot_uri: MIXS:0000453
alias: water_prod_rate
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- HydrocarbonResourcesFluidsSwabs
range: string
recommended: true
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
water_cut:
name: water_cut
annotations:
Preferred_unit:
tag: Preferred_unit
value: percent
description: Current amount of water (%) in a produced fluid stream; or the average
of the combined streams
title: water cut
comments:
- percent or float?
examples:
- value: 45%
from_schema: https://w3id.org/mixs
keywords:
- water
slot_uri: MIXS:0000454
alias: water_cut
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- HydrocarbonResourcesFluidsSwabs
range: string
required: true
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
iwf:
name: iwf
annotations:
Preferred_unit:
tag: Preferred_unit
value: percent
description: Proportion of the produced fluids derived from injected water at
the time of sampling. (e.g. 87%)
title: injection water fraction
comments:
- pattern was "[0-9]*\\.?[0-9]+ ?%"
- percent or float?
examples:
- value: '0.79'
from_schema: https://w3id.org/mixs
keywords:
- fraction
- water
slot_uri: MIXS:0000455
alias: iwf
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- HydrocarbonResourcesFluidsSwabs
range: float
required: true
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
add_recov_method:
name: add_recov_method
description: Additional (i.e. Secondary, tertiary, etc.) recovery methods deployed
for increase of hydrocarbon recovery from resource and start date for each one
of them. If "other" is specified, please propose entry in "additional info"
field
title: secondary and tertiary recovery methods and start date
examples:
- value: Polymer Addition;2018-06-21T14:30Z
from_schema: https://w3id.org/mixs
keywords:
- date
- method
- recover
- secondary
- start
slot_uri: MIXS:0001009
alias: add_recov_method
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- HydrocarbonResourcesFluidsSwabs
range: string
required: true
structured_pattern:
syntax: ^({add_recov_methods});{date_time_stamp}$
interpolated: true
partial_match: true
iw_bt_date_well:
name: iw_bt_date_well
description: Injection water breakthrough date per well following a secondary
and/or tertiary recovery
title: injection water breakthrough date of specific well
examples:
- value: '2013-03-25T12:42:31+01:00'
from_schema: https://w3id.org/mixs
keywords:
- date
- water
slot_uri: MIXS:0001010
alias: iw_bt_date_well
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- HydrocarbonResourcesFluidsSwabs
range: datetime
biocide:
name: biocide
annotations:
Expected_value:
tag: Expected_value
value: name;name;timestamp
description: List of biocides (commercial name of product and supplier) and date
of administration
title: biocide administration
examples:
- value: ALPHA 1427;Baker Hughes;2008-01-23
from_schema: https://w3id.org/mixs
keywords:
- administration
string_serialization: '{text};{text};{timestamp}'
slot_uri: MIXS:0001011
alias: biocide
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- HydrocarbonResourcesFluidsSwabs
range: string
recommended: true
biocide_admin_method:
name: biocide_admin_method
annotations:
Expected_value:
tag: Expected_value
value: measurement value;frequency;duration;duration
Preferred_unit:
tag: Preferred_unit
value: milligram per liter
description: Method of biocide administration (dose, frequency, duration, time
elapsed between last biociding and sampling) (e.g. 150 mg/l; weekly; 4 hr; 3
days)
title: biocide administration method
from_schema: https://w3id.org/mixs
keywords:
- administration
- method
string_serialization: '{float} {unit};{Rn/start_time/end_time/duration};{duration}'
slot_uri: MIXS:0000456
alias: biocide_admin_method
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- HydrocarbonResourcesFluidsSwabs
range: string
recommended: true
chem_treatment:
name: chem_treatment
annotations:
Expected_value:
tag: Expected_value
value: name;name;timestamp
description: List of chemical compounds administered upstream the sampling location
where sampling occurred (e.g. Glycols, H2S scavenger, corrosion and scale inhibitors,
demulsifiers, and other production chemicals etc.). The commercial name of the
product and name of the supplier should be provided. The date of administration
should also be included
title: chemical treatment
examples:
- value: ACCENT 1125;DOW;2010-11-17
from_schema: https://w3id.org/mixs
keywords:
- treatment
string_serialization: '{text};{text};{timestamp}'
slot_uri: MIXS:0001012
alias: chem_treatment
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- HydrocarbonResourcesFluidsSwabs
range: string
chem_treat_method:
name: chem_treat_method
annotations:
Expected_value:
tag: Expected_value
value: measurement value;frequency;duration;duration
Preferred_unit:
tag: Preferred_unit
value: milligram per liter
description: Method of chemical administration(dose, frequency, duration, time
elapsed between administration and sampling) (e.g. 50 mg/l; twice a week; 1
hr; 0 days)
title: chemical treatment method
from_schema: https://w3id.org/mixs
keywords:
- method
- treatment
string_serialization: '{float} {unit};{Rn/start_time/end_time/duration};{duration};{duration}'
slot_uri: MIXS:0000457
alias: chem_treat_method
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- HydrocarbonResourcesFluidsSwabs
range: string
samp_loc_corr_rate:
name: samp_loc_corr_rate
annotations:
Preferred_unit:
tag: Preferred_unit
value: millimeter per year
description: Metal corrosion rate is the speed of metal deterioration due to environmental
conditions. As environmental conditions change corrosion rates change accordingly.
Therefore, long term corrosion rates are generally more informative than short
term rates and for that reason they are preferred during reporting. In the case
of suspected MIC, corrosion rate measurements at the time of sampling might
provide insights into the involvement of certain microbial community members
in MIC as well as potential microbial interplays
title: corrosion rate at sample location
from_schema: https://w3id.org/mixs
keywords:
- location
- rate
- sample
slot_uri: MIXS:0000136
alias: samp_loc_corr_rate
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- HydrocarbonResourcesFluidsSwabs
range: string
recommended: true
pattern: ^[-+]?[0-9]*\.?[0-9]+ *- *[-+]?[0-9]*\.?[0-9]+ ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{float} *- *{float} {unit}$
interpolated: true
partial_match: true
samp_well_name:
name: samp_well_name
description: Name of the well (e.g. BXA1123) where sample was taken
title: sample well name
from_schema: https://w3id.org/mixs
keywords:
- sample
slot_uri: MIXS:0000296
alias: samp_well_name
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
range: string
recommended: true
win:
name: win
description: 'A unique identifier of a well or wellbore. This is part of the Global
Framework for Well Identification initiative which is compiled by the Professional
Petroleum Data Management Association (PPDM) in an effort to improve well identification
systems. (Supporting information: https://ppdm.org/ and http://dl.ppdm.org/dl/690)'
title: well identification number
from_schema: https://w3id.org/mixs
keywords:
- identifier
- number
slot_uri: MIXS:0000297
alias: win
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
range: string
recommended: true
samp_type:
name: samp_type
description: The type of material from which the sample was obtained. For the
Hydrocarbon package, samples include types like core, rock trimmings, drill
cuttings, piping section, coupon, pigging debris, solid deposit, produced fluid,
produced water, injected water, swabs, etc. For the Food Package, samples are
usually categorized as food, body products or tissues, or environmental material.
This field accepts terms listed under environmental specimen (http://purl.obolibrary.org/obo/GENEPIO_0001246)
title: sample type
examples:
- value: built environment sample [GENEPIO:0001248]
from_schema: https://w3id.org/mixs
keywords:
- sample
- type
slot_uri: MIXS:0000998
alias: samp_type
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- FoodFarmEnvironment
- FoodFoodProductionFacility
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
range: string
required: true
pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$
structured_pattern:
syntax: ^{termLabel} \[{termID}\]$
interpolated: true
partial_match: true
samp_subtype:
name: samp_subtype
description: Name of sample sub-type. For example if "sample type" is "Produced
Water" then subtype could be "Oil Phase" or "Water Phase". If "other" is specified,
please propose entry in "additional info" field
title: sample subtype
examples:
- value: biofilm
from_schema: https://w3id.org/mixs
keywords:
- sample
slot_uri: MIXS:0000999
alias: samp_subtype
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
range: SampSubtypeEnum
recommended: true
samp_collect_point:
name: samp_collect_point
description: Sampling point on the asset were sample was collected (e.g. Wellhead,
storage tank, separator, etc). If "other" is specified, please propose entry
in "additional info" field
title: sample collection point
examples:
- value: well
from_schema: https://w3id.org/mixs
keywords:
- sample
slot_uri: MIXS:0001015
alias: samp_collect_point
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- HydrocarbonResourcesFluidsSwabs
range: SampCollectPointEnum
required: true
temp:
name: temp
annotations:
Preferred_unit:
tag: Preferred_unit
value: degree Celsius
description: Temperature of the sample at the time of sampling
title: temperature
examples:
- value: 25 degree Celsius
in_subset:
- environment
from_schema: https://w3id.org/mixs
keywords:
- temperature
slot_uri: MIXS:0000113
alias: temp
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- Agriculture
- Air
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- WastewaterSludge
- Water
range: string
required: true
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
pressure:
name: pressure
annotations:
Preferred_unit:
tag: Preferred_unit
value: atmosphere
description: Pressure to which the sample is subject to, in atmospheres
title: pressure
examples:
- value: 50 atmosphere
from_schema: https://w3id.org/mixs
keywords:
- pressure
slot_uri: MIXS:0000412
alias: pressure
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
oxy_stat_samp:
name: oxy_stat_samp
description: Oxygenation status of sample
title: oxygenation status of sample
examples:
- value: aerobic
from_schema: https://w3id.org/mixs
keywords:
- oxygen
- sample
- status
slot_uri: MIXS:0000753
alias: oxy_stat_samp
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- Agriculture
- Air
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
range: OxyStatSampEnum
samp_preserv:
name: samp_preserv
annotations:
Preferred_unit:
tag: Preferred_unit
value: milliliter
description: Preservative added to the sample (e.g. Rnalater, alcohol, formaldehyde,
etc.). Where appropriate include volume added (e.g. Rnalater; 2 ml)
title: preservative added to sample
from_schema: https://w3id.org/mixs
keywords:
- sample
slot_uri: MIXS:0000463
alias: samp_preserv
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- HydrocarbonResourcesFluidsSwabs
range: string
pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);[-+]?[0-9]*\.?[0-9]+ ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{name};{float} {unit}$
interpolated: true
partial_match: true
samp_transport_cond:
name: samp_transport_cond
annotations:
Expected_value:
tag: Expected_value
value: measurement value;measurement value
Preferred_unit:
tag: Preferred_unit
value: days;degree Celsius
description: Sample transport duration (in days or hrs) and temperature the sample
was exposed to (e.g. 5.5 days; 20 C)
title: sample transport conditions
examples:
- value: 5 days;-20 degree Celsius
from_schema: https://w3id.org/mixs
keywords:
- condition
- sample
- transport
string_serialization: '{float} {unit};{float} {unit}'
slot_uri: MIXS:0000410
alias: samp_transport_cond
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
range: string
samp_store_temp:
name: samp_store_temp
annotations:
Preferred_unit:
tag: Preferred_unit
value: degree Celsius
description: Temperature at which sample was stored, e.g. -80 degree Celsius
title: sample storage temperature
examples:
- value: -80 degree Celsius
from_schema: https://w3id.org/mixs
keywords:
- sample
- storage
- temperature
slot_uri: MIXS:0000110
alias: samp_store_temp
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- Agriculture
- Air
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
samp_store_dur:
name: samp_store_dur
description: Duration for which the sample was stored. Indicate the duration for
which the sample was stored written in ISO 8601 format
title: sample storage duration
examples:
- value: P1Y6M
from_schema: https://w3id.org/mixs
keywords:
- duration
- period
- sample
- storage
slot_uri: MIXS:0000116
alias: samp_store_dur
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- Agriculture
- Air
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
range: string
pattern: ^P(?:(?:\d+D|\d+M(?:\d+D)?|\d+Y(?:\d+M(?:\d+D)?)?)(?:T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S))?|T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S)|\d+W)$
structured_pattern:
syntax: ^{duration}$
interpolated: true
partial_match: true
samp_store_loc:
name: samp_store_loc
annotations:
Expected_value:
tag: Expected_value
value: location name
description: Location at which sample was stored, usually name of a specific freezer/room
title: sample storage location
examples:
- value: Freezer no:5
from_schema: https://w3id.org/mixs
keywords:
- location
- sample
- storage
slot_uri: MIXS:0000755
alias: samp_store_loc
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- Agriculture
- Air
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
range: string
samp_vol_we_dna_ext:
name: samp_vol_we_dna_ext
annotations:
Preferred_unit:
tag: Preferred_unit
value: milliliter, gram, milligram, square centimeter
description: 'Volume (ml) or mass (g) of total collected sample processed for
DNA extraction. Note: total sample collected should be entered under the term
Sample Size (MIXS:0000001)'
title: sample volume or weight for DNA extraction
examples:
- value: 1500 milliliter
in_subset:
- nucleic acid sequence source
from_schema: https://w3id.org/mixs
keywords:
- dna
- sample
- volume
- weight
slot_uri: MIXS:0000111
alias: samp_vol_we_dna_ext
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- Agriculture
- Air
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- WastewaterSludge
- Water
range: string
recommended: true
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
organism_count:
name: organism_count
annotations:
Expected_value:
tag: Expected_value
value: organism name;measurement value;enumeration
description: 'Total cell count of any organism (or group of organisms) per gram,
volume or area of sample, should include name of organism followed by count.
The method that was used for the enumeration (e.g. qPCR, atp, mpn, etc.) Should
also be provided. (example: total prokaryotes; 3.5e7 cells per ml; qpcr)'
title: organism count
examples:
- value: total prokaryotes;3.5e7 cells per milliliter;qPCR
from_schema: https://w3id.org/mixs
keywords:
- count
- organism
string_serialization: '{text};{float} {unit};[ATP|MPN|qPCR|other]'
slot_uri: MIXS:0000103
alias: organism_count
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- Agriculture
- Air
- BuiltEnvironment
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
range: string
recommended: true
multivalued: true
org_count_qpcr_info:
name: org_count_qpcr_info
annotations:
Expected_value:
tag: Expected_value
value: gene name;FWD:forward primer sequence;REV:reverse primer sequence;initial
denaturation:degrees_minutes;denaturation:degrees_minutes;annealing:degrees_minutes;elongation:degrees_minutes;final
elongation:degrees_minutes; total cycles
Preferred_unit:
tag: Preferred_unit
value: number of cells per gram (or ml or cm^2)
description: 'If qpcr was used for the cell count, the target gene name, the primer
sequence and the cycling conditions should also be provided. (Example: 16S rrna;
FWD:ACGTAGCTATGACGT REV:GTGCTAGTCGAGTAC; initial denaturation:90C_5min; denaturation:90C_2min;
annealing:52C_30 sec; elongation:72C_30 sec; 90 C for 1 min; final elongation:72C_5min;
30 cycles)'
title: organism count qPCR information
from_schema: https://w3id.org/mixs
keywords:
- count
- information
- organism
string_serialization: '{text};FWD:{dna};REV:{dna};initial denaturation:degrees_minutes;denaturation:degrees_minutes;annealing:degrees_minutes;elongation:degrees_minutes;final
elongation:degrees_minutes; total cycles'
slot_uri: MIXS:0000099
alias: org_count_qpcr_info
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
range: string
ph:
name: ph
description: Ph measurement of the sample, or liquid portion of sample, or aqueous
phase of the fluid
title: pH
examples:
- value: '7.2'
from_schema: https://w3id.org/mixs
keywords:
- ph
slot_uri: MIXS:0001001
alias: ph
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- FoodFarmEnvironment
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Soil
- WastewaterSludge
- Water
range: float
recommended: true
salinity:
name: salinity
annotations:
Preferred_unit:
tag: Preferred_unit
value: practical salinity unit, percentage
description: The total concentration of all dissolved salts in a liquid or solid
sample. While salinity can be measured by a complete chemical analysis, this
method is difficult and time consuming. More often, it is instead derived from
the conductivity measurement. This is known as practical salinity. These derivations
compare the specific conductance of the sample to a salinity standard such as
seawater
title: salinity
examples:
- value: 25 practical salinity unit
from_schema: https://w3id.org/mixs
keywords:
- salinity
slot_uri: MIXS:0000183
alias: salinity
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- Air
- FoodFarmEnvironment
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
alkalinity:
name: alkalinity
annotations:
Preferred_unit:
tag: Preferred_unit
value: milliequivalent per liter, milligram per liter
description: Alkalinity, the ability of a solution to neutralize acids to the
equivalence point of carbonate or bicarbonate
title: alkalinity
examples:
- value: 50 milligram per liter
from_schema: https://w3id.org/mixs
keywords:
- alkalinity
slot_uri: MIXS:0000421
alias: alkalinity
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- WastewaterSludge
- Water
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
alkalinity_method:
name: alkalinity_method
description: Method used for alkalinity measurement
title: alkalinity method
examples:
- value: titration
from_schema: https://w3id.org/mixs
keywords:
- alkalinity
- method
slot_uri: MIXS:0000298
alias: alkalinity_method
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- Water
range: string
sulfate:
name: sulfate
annotations:
Preferred_unit:
tag: Preferred_unit
value: micromole per liter, milligram per liter, parts per million
description: Concentration of sulfate in the sample
title: sulfate
examples:
- value: 5 micromole per liter
from_schema: https://w3id.org/mixs
keywords:
- sulfate
slot_uri: MIXS:0000423
alias: sulfate
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
range: string
required: true
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
sulfide:
name: sulfide
annotations:
Preferred_unit:
tag: Preferred_unit
value: micromole per liter, milligram per liter, parts per million
description: Concentration of sulfide in the sample
title: sulfide
examples:
- value: 2 micromole per liter
from_schema: https://w3id.org/mixs
keywords:
- sulfide
slot_uri: MIXS:0000424
alias: sulfide
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
range: string
required: true
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
tot_sulfur:
name: tot_sulfur
annotations:
Preferred_unit:
tag: Preferred_unit
value: milligram per liter, parts per million
description: Concentration of total sulfur in the sample
title: total sulfur
from_schema: https://w3id.org/mixs
keywords:
- sulfur
- total
slot_uri: MIXS:0000419
alias: tot_sulfur
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
range: string
recommended: true
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
nitrate:
name: nitrate
annotations:
Preferred_unit:
tag: Preferred_unit
value: micromole per liter, milligram per liter, parts per million
description: Concentration of nitrate in the sample
title: nitrate
examples:
- value: 65 micromole per liter
from_schema: https://w3id.org/mixs
keywords:
- nitrate
slot_uri: MIXS:0000425
alias: nitrate
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- WastewaterSludge
- Water
range: string
required: true
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
nitrite:
name: nitrite
annotations:
Preferred_unit:
tag: Preferred_unit
value: micromole per liter, milligram per liter, parts per million
description: Concentration of nitrite in the sample
title: nitrite
examples:
- value: 0.5 micromole per liter
from_schema: https://w3id.org/mixs
keywords:
- nitrite
slot_uri: MIXS:0000426
alias: nitrite
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
range: string
recommended: true
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
ammonium:
name: ammonium
annotations:
Preferred_unit:
tag: Preferred_unit
value: micromole per liter, milligram per liter, parts per million
description: Concentration of ammonium in the sample
title: ammonium
examples:
- value: 1.5 milligram per liter
from_schema: https://w3id.org/mixs
slot_uri: MIXS:0000427
alias: ammonium
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
range: string
recommended: true
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
tot_nitro:
name: tot_nitro
annotations:
Preferred_unit:
tag: Preferred_unit
value: microgram per liter, micromole per liter, milligram per liter
description: 'Total nitrogen concentration of water samples, calculated by: total
nitrogen = total dissolved nitrogen + particulate nitrogen. Can also be measured
without filtering, reported as nitrogen'
title: total nitrogen concentration
examples:
- value: 50 micromole per liter
from_schema: https://w3id.org/mixs
keywords:
- concentration
- nitrogen
- total
slot_uri: MIXS:0000102
alias: tot_nitro
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- WastewaterSludge
- Water
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
diss_iron:
name: diss_iron
annotations:
Preferred_unit:
tag: Preferred_unit
value: milligram per liter
description: Concentration of dissolved iron in the sample
title: dissolved iron
from_schema: https://w3id.org/mixs
keywords:
- dissolved
slot_uri: MIXS:0000139
alias: diss_iron
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
range: string
recommended: true
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
sodium:
name: sodium
annotations:
Preferred_unit:
tag: Preferred_unit
value: milligram per liter, parts per million
description: Sodium concentration in the sample
title: sodium
examples:
- value: 10.5 milligram per liter
from_schema: https://w3id.org/mixs
slot_uri: MIXS:0000428
alias: sodium
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- WastewaterSludge
- Water
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
chloride:
name: chloride
annotations:
Preferred_unit:
tag: Preferred_unit
value: milligram per liter, parts per million
description: Concentration of chloride in the sample
title: chloride
examples:
- value: 5000 milligram per liter
from_schema: https://w3id.org/mixs
slot_uri: MIXS:0000429
alias: chloride
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
potassium:
name: potassium
annotations:
Preferred_unit:
tag: Preferred_unit
value: milligram per liter, parts per million
description: Concentration of potassium in the sample
title: potassium
examples:
- value: 463 milligram per liter
from_schema: https://w3id.org/mixs
slot_uri: MIXS:0000430
alias: potassium
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
magnesium:
name: magnesium
annotations:
Preferred_unit:
tag: Preferred_unit
value: mole per liter, milligram per liter, parts per million, micromole per
kilogram
description: Concentration of magnesium in the sample
title: magnesium
examples:
- value: 52.8 micromole per kilogram
from_schema: https://w3id.org/mixs
slot_uri: MIXS:0000431
alias: magnesium
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- Sediment
- Water
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
calcium:
name: calcium
annotations:
Preferred_unit:
tag: Preferred_unit
value: milligram per liter, micromole per liter, parts per million
description: Concentration of calcium in the sample
title: calcium
examples:
- value: 0.2 micromole per liter
from_schema: https://w3id.org/mixs
slot_uri: MIXS:0000432
alias: calcium
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
tot_iron:
name: tot_iron
annotations:
Preferred_unit:
tag: Preferred_unit
value: milligram per liter, milligram per kilogram
description: Concentration of total iron in the sample
title: total iron
from_schema: https://w3id.org/mixs
keywords:
- total
slot_uri: MIXS:0000105
alias: tot_iron
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
range: string
recommended: true
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
diss_org_carb:
name: diss_org_carb
annotations:
Preferred_unit:
tag: Preferred_unit
value: micromole per liter, milligram per liter
description: Concentration of dissolved organic carbon in the sample, liquid portion
of the sample, or aqueous phase of the fluid
title: dissolved organic carbon
examples:
- value: 197 micromole per liter
from_schema: https://w3id.org/mixs
keywords:
- carbon
- dissolved
- organic
slot_uri: MIXS:0000433
alias: diss_org_carb
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- Sediment
- Water
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
diss_inorg_carb:
name: diss_inorg_carb
annotations:
Preferred_unit:
tag: Preferred_unit
value: microgram per liter, milligram per liter, parts per million
description: Dissolved inorganic carbon concentration in the sample, typically
measured after filtering the sample using a 0.45 micrometer filter
title: dissolved inorganic carbon
examples:
- value: 2059 micromole per kilogram
from_schema: https://w3id.org/mixs
keywords:
- carbon
- dissolved
- inorganic
slot_uri: MIXS:0000434
alias: diss_inorg_carb
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
diss_inorg_phosp:
name: diss_inorg_phosp
description: Concentration of dissolved inorganic phosphorus in the sample
title: dissolved inorganic phosphorus
examples:
- value: 56.5 micromole per liter
from_schema: https://w3id.org/mixs
keywords:
- dissolved
- inorganic
- phosphorus
slot_uri: MIXS:0000106
alias: diss_inorg_phosp
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- Water
range: string
recommended: true
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
tot_phosp:
name: tot_phosp
annotations:
Preferred_unit:
tag: Preferred_unit
value: micromole per liter, milligram per liter, parts per million
description: 'Total phosphorus concentration in the sample, calculated by: total
phosphorus = total dissolved phosphorus + particulate phosphorus'
title: total phosphorus
examples:
- value: 0.03 milligram per liter
from_schema: https://w3id.org/mixs
keywords:
- phosphorus
- total
slot_uri: MIXS:0000117
alias: tot_phosp
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- Water
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
suspend_solids:
name: suspend_solids
annotations:
Expected_value:
tag: Expected_value
value: suspended solid name;measurement value
Preferred_unit:
tag: Preferred_unit
value: gram, microgram, milligram per liter, mole per liter, gram per liter,
part per million
description: Concentration of substances including a wide variety of material,
such as silt, decaying plant and animal matter; can include multiple substances
title: suspended solids
from_schema: https://w3id.org/mixs
keywords:
- solids
- suspended
string_serialization: '{text};{float} {unit}'
slot_uri: MIXS:0000150
alias: suspend_solids
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- WastewaterSludge
range: string
multivalued: true
density:
name: density
annotations:
Preferred_unit:
tag: Preferred_unit
value: gram per cubic meter, gram per cubic centimeter
description: Density of the sample, which is its mass per unit volume (aka volumetric
mass density)
title: density
examples:
- value: 1000 kilogram per cubic meter
from_schema: https://w3id.org/mixs
keywords:
- density
slot_uri: MIXS:0000435
alias: density
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
diss_carb_dioxide:
name: diss_carb_dioxide
annotations:
Preferred_unit:
tag: Preferred_unit
value: micromole per liter, milligram per liter
description: Concentration of dissolved carbon dioxide in the sample or liquid
portion of the sample
title: dissolved carbon dioxide
examples:
- value: 5 milligram per liter
from_schema: https://w3id.org/mixs
keywords:
- carbon
- dissolved
slot_uri: MIXS:0000436
alias: diss_carb_dioxide
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
diss_oxygen_fluid:
name: diss_oxygen_fluid
annotations:
Preferred_unit:
tag: Preferred_unit
value: micromole per kilogram, milligram per liter
description: Concentration of dissolved oxygen in the oil field produced fluids
as it contributes to oxgen-corrosion and microbial activity (e.g. Mic)
title: dissolved oxygen in fluids
from_schema: https://w3id.org/mixs
keywords:
- dissolved
- oxygen
slot_uri: MIXS:0000438
alias: diss_oxygen_fluid
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
vfa:
name: vfa
annotations:
Preferred_unit:
tag: Preferred_unit
value: milligram per liter, parts per million
description: Concentration of Volatile Fatty Acids in the sample
title: volatile fatty acids
from_schema: https://w3id.org/mixs
slot_uri: MIXS:0000152
alias: vfa
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
range: string
recommended: true
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
benzene:
name: benzene
annotations:
Preferred_unit:
tag: Preferred_unit
value: milligram per liter, parts per million
description: Concentration of benzene in the sample
title: benzene
from_schema: https://w3id.org/mixs
slot_uri: MIXS:0000153
alias: benzene
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
range: string
recommended: true
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
toluene:
name: toluene
annotations:
Preferred_unit:
tag: Preferred_unit
value: milligram per liter, parts per million
description: Concentration of toluene in the sample
title: toluene
from_schema: https://w3id.org/mixs
slot_uri: MIXS:0000154
alias: toluene
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
range: string
recommended: true
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
ethylbenzene:
name: ethylbenzene
annotations:
Preferred_unit:
tag: Preferred_unit
value: milligram per liter, parts per million
description: Concentration of ethylbenzene in the sample
title: ethylbenzene
from_schema: https://w3id.org/mixs
slot_uri: MIXS:0000155
alias: ethylbenzene
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
range: string
recommended: true
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
xylene:
name: xylene
annotations:
Preferred_unit:
tag: Preferred_unit
value: milligram per liter, parts per million
description: Concentration of xylene in the sample
title: xylene
from_schema: https://w3id.org/mixs
slot_uri: MIXS:0000156
alias: xylene
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
range: string
recommended: true
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
api:
name: api
annotations:
Preferred_unit:
tag: Preferred_unit
value: degrees API
description: 'API gravity is a measure of how heavy or light a petroleum liquid
is compared to water (source: https://en.wikipedia.org/wiki/API_gravity) (e.g.
31.1 API)'
title: API gravity
examples:
- value: 31.1 API
from_schema: https://w3id.org/mixs
slot_uri: MIXS:0000157
alias: api
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
range: string
required: true
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
tan:
name: tan
annotations:
Preferred_unit:
tag: Preferred_unit
value: milligram per liter
description: 'Total Acid Number (TAN) is a measurement of acidity that is determined
by the amount of potassium hydroxide in milligrams that is needed to neutralize
the acids in one gram of oil. It is an important quality measurement of crude
oil. (source: https://en.wikipedia.org/wiki/Total_acid_number)'
title: total acid number
from_schema: https://w3id.org/mixs
keywords:
- number
- total
slot_uri: MIXS:0000120
alias: tan
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
range: string
recommended: true
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
viscosity:
name: viscosity
annotations:
Expected_value:
tag: Expected_value
value: measurement value;measurement value
Preferred_unit:
tag: Preferred_unit
value: cP at degree Celsius
description: A measure of oil's resistance to gradual deformation by shear stress or tensile
stress (e.g. 3.5 cp; 100 C)
title: viscosity
from_schema: https://w3id.org/mixs
string_serialization: '{float} {unit};{float} {unit}'
slot_uri: MIXS:0000126
alias: viscosity
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
range: string
pour_point:
name: pour_point
annotations:
Preferred_unit:
tag: Preferred_unit
value: degree Celsius
description: 'Temperature at which a liquid becomes semi solid and loses its flow
characteristics. In crude oil a high pour point is generally associated with
a high paraffin content, typically found in crude deriving from a larger proportion
of plant material. (soure: https://en.wikipedia.org/wiki/pour_point)'
title: pour point
from_schema: https://w3id.org/mixs
slot_uri: MIXS:0000127
alias: pour_point
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
saturates_pc:
name: saturates_pc
annotations:
Preferred_unit:
tag: Preferred_unit
value: percent
description: 'Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis
method that divides crude oil components according to their polarizability
and polarity. There are three main methods to obtain SARA results. The most
popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source:
https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)'
title: saturates wt%
from_schema: https://w3id.org/mixs
slot_uri: MIXS:0000131
alias: saturates_pc
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
range: string
recommended: true
pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);[-+]?[0-9]*\.?[0-9]+ ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{name};{float} {unit}$
interpolated: true
partial_match: true
aromatics_pc:
name: aromatics_pc
annotations:
Preferred_unit:
tag: Preferred_unit
value: percent
description: 'Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis
method that divides crude oil components according to their polarizability
and polarity. There are three main methods to obtain SARA results. The most
popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source:
https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)'
title: aromatics wt%
from_schema: https://w3id.org/mixs
slot_uri: MIXS:0000133
alias: aromatics_pc
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
range: string
recommended: true
pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);[-+]?[0-9]*\.?[0-9]+ ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{name};{float} {unit}$
interpolated: true
partial_match: true
resins_pc:
name: resins_pc
annotations:
Preferred_unit:
tag: Preferred_unit
value: percent
description: 'Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis
method that divides crude oil components according to their polarizability
and polarity. There are three main methods to obtain SARA results. The most
popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source:
https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)'
title: resins wt%
from_schema: https://w3id.org/mixs
slot_uri: MIXS:0000134
alias: resins_pc
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
range: string
recommended: true
pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);[-+]?[0-9]*\.?[0-9]+ ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{name};{float} {unit}$
interpolated: true
partial_match: true
asphaltenes_pc:
name: asphaltenes_pc
annotations:
Preferred_unit:
tag: Preferred_unit
value: percent
description: 'Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis
method that divides crude oil components according to their polarizability
and polarity. There are three main methods to obtain SARA results. The most
popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source:
https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)'
title: asphaltenes wt%
from_schema: https://w3id.org/mixs
slot_uri: MIXS:0000135
alias: asphaltenes_pc
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
range: string
recommended: true
pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);[-+]?[0-9]*\.?[0-9]+ ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{name};{float} {unit}$
interpolated: true
partial_match: true
misc_param:
name: misc_param
annotations:
Expected_value:
tag: Expected_value
value: parameter name;measurement value
description: Any other measurement performed or parameter collected, that is not
listed here
title: miscellaneous parameter
examples:
- value: Bicarbonate ion concentration;2075 micromole per kilogram
from_schema: https://w3id.org/mixs
keywords:
- parameter
string_serialization: '{text};{float} {unit}'
slot_uri: MIXS:0000752
alias: misc_param
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- Agriculture
- Air
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- WastewaterSludge
- Water
range: string
multivalued: true
additional_info:
name: additional_info
description: Information that doesn't fit anywhere else. Can also be used to propose
new entries for fields with controlled vocabulary
title: additional info
from_schema: https://w3id.org/mixs
keywords:
- information
slot_uri: MIXS:0000300
alias: additional_info
owner: HydrocarbonResourcesFluidsSwabs
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
range: string
class_uri: MIXS:0016016