Combination: MimarksC combined with BuiltEnvironment (MimarksCBuiltEnvironment)
MIxS Data that comply with the MimarksC checklist and the BuiltEnvironment Extension
Composition
MimarksC [Checklist] + BuiltEnvironment [Extension]
Terms
MIXS ID | Name | Cardinality and Range | Description |
---|---|---|---|
MIXS:0001107 | samp_name | 1 String |
A local identifier or name that for the material sample used for extracting n... |
MIXS:0000046 | pcr_primers | 0..1 recommended String |
PCR primers that were used to amplify the sequence of the targeted gene, locu... |
MIXS:0000038 | nucl_acid_amp | 0..1 recommended String |
A link to a literature reference, electronic resource or a standard operating... |
MIXS:0000045 | target_subfragment | 0..1 recommended String |
Name of subfragment of a gene or locus |
MIXS:0000113 | temp | 0..1 recommended String |
Temperature of the sample at the time of sampling |
MIXS:0000049 | pcr_cond | 0..1 recommended String |
Description of reaction conditions and components of polymerase chain reactio... |
MIXS:0000037 | nucl_acid_ext | 0..1 recommended String |
A link to a literature reference, electronic resource or a standard operating... |
MIXS:0000001 | samp_size | 0..1 String |
The total amount or size (volume (ml), mass (g) or area (m2) ) of sample coll... |
MIXS:0000003 | isol_growth_condt | 1 String |
Publication reference in the form of pubmed ID (pmid), digital object identif... |
MIXS:0000094 | alt | 0..1 recommended String |
Heights of objects such as airplanes, space shuttles, rockets, atmospheric ba... |
MIXS:0000026 | source_mat_id | * recommended String |
A unique identifier assigned to a material sample (as defined by http://rs |
MIXS:0000023 | extrachrom_elements | 0..1 Integer |
Do plasmids exist of significant phenotypic consequence (e |
MIXS:0000111 | samp_vol_we_dna_ext | 0..1 String |
Volume (ml) or mass (g) of total collected sample processed for DNA extractio... |
MIXS:0000015 | rel_to_oxygen | 0..1 recommended RelToOxygenEnum |
Is this organism an aerobe, anaerobe? Please note that aerobic and anaerobic ... |
MIXS:0000002 | samp_collect_device | 0..1 String |
The device used to collect an environmental sample |
MIXS:0000028 | biotic_relationship | 0..1 recommended BioticRelationshipEnum |
Description of relationship(s) between the subject organism and other organis... |
MIXS:0000051 | seq_quality_check | 0..1 recommended SeqQualityCheckEnum |
Indicate if the sequence has been called by automatic systems (none) or under... |
MIXS:0000092 | project_name | 1 String |
Name of the project within which the sequencing was organized |
MIXS:0001321 | neg_cont_type | 0..1 recommended NegContTypeEnum |
The substance or equipment used as a negative control in an investigation |
MIXS:0000052 | chimera_check | 0..1 recommended String |
Tool(s) used for chimera checking, including version number and parameters, t... |
MIXS:0000032 | trophic_level | 0..1 recommended TrophicLevelEnum |
Trophic levels are the feeding position in a food chain |
MIXS:0001322 | pos_cont_type | 0..1 recommended String |
The substance, mixture, product, or apparatus used to verify that a process w... |
MIXS:0000020 | subspecf_gen_lin | 0..1 recommended String |
Information about the genetic distinctness of the sequenced organism below th... |
MIXS:0000013 | env_local_scale | 1 String |
Report the entity or entities which are in the sample or specimen s local vic... |
MIXS:0000016 | samp_mat_process | 0..1 recommended String |
A brief description of any processing applied to the sample during or after r... |
MIXS:0000018 | depth | 0..1 recommended String |
The vertical distance below local surface |
MIXS:0001225 | samp_collect_method | 0..1 String |
The method employed for collecting the sample |
MIXS:0000014 | env_medium | 1 String |
Report the environmental material(s) immediately surrounding the sample or sp... |
MIXS:0001320 | samp_taxon_id | 1 String |
NCBI taxon id of the sample |
MIXS:0000010 | geo_loc_name | 1 String |
The geographical origin of the sample as defined by the country or sea name f... |
MIXS:0000011 | collection_date | 1 Datetime |
The time of sampling, either as an instance (single point in time) or interva... |
MIXS:0000050 | seq_meth | 1 String |
Sequencing machine used |
MIXS:0000009 | lat_lon | 1 String |
The geographical origin of the sample as defined by latitude and longitude |
MIXS:0000093 | elev | 0..1 recommended String |
Elevation of the sampling site is its height above a fixed reference point, m... |
MIXS:0000012 | env_broad_scale | 1 String |
Report the major environmental system the sample or specimen came from |
MIXS:0000008 | experimental_factor | * String |
Variable aspects of an experiment design that can be used to describe an expe... |
MIXS:0000044 | target_gene | 1 String |
Targeted gene or locus name for marker gene studies |
MIXS:0000091 | associated_resource | * recommended String |
A related resource that is referenced, cited, or otherwise associated to the ... |
MIXS:0000090 | sop | * recommended String |
Standard operating procedures used in assembly and/or annotation of genomes, ... |
MIXS:0000758 | surf_material | 1 recommended SurfMaterialEnum |
Surface materials at the point of sampling |
MIXS:0000759 | surf_air_cont | * recommended SurfAirContEnum |
Contaminant identified on surface |
MIXS:0000121 | rel_air_humidity | 1 Float |
Partial vapor and air pressure, density of the vapor and air, or by the actua... |
MIXS:0000122 | abs_air_humidity | 1 String |
Actual mass of water vapor - mh20 - present in the air water vapor mixture |
MIXS:0000123 | surf_humidity | 0..1 recommended Float |
Surfaces: water activity as a function of air and material moisture |
MIXS:0000124 | air_temp | 1 String |
Temperature of the air at the time of sampling |
MIXS:0000125 | surf_temp | 0..1 recommended String |
Temperature of the surface at the time of sampling |
MIXS:0000760 | surf_moisture_ph | 0..1 recommended Float |
ph measurement of surface |
MIXS:0000761 | build_occup_type | 1..* BuildOccupTypeEnum |
The primary function for which a building or discrete part of a building is i... |
MIXS:0000128 | surf_moisture | 0..1 recommended String |
Water held on a surface |
MIXS:0000129 | dew_point | 0..1 String |
The temperature to which a given parcel of humid air must be cooled, at const... |
MIXS:0000097 | carb_dioxide | 1 String |
Carbon dioxide (gas) amount or concentration at the time of sampling |
MIXS:0000756 | ventilation_type | 1..* String |
Ventilation system used in the sampled premises |
MIXS:0000103 | organism_count | 1..* String |
Total cell count of any organism (or group of organisms) per gram, volume or ... |
MIXS:0000763 | indoor_space | 1 IndoorSpaceEnum |
A distinguishable space within a structure, the purpose for which discrete ar... |
MIXS:0000764 | indoor_surf | 1 recommended IndoorSurfEnum |
Type of indoor surface |
MIXS:0000765 | filter_type | 1..* FilterTypeEnum |
A device which removes solid particulates or airborne molecular contaminants |
MIXS:0000766 | heat_cool_type | 1..* HeatCoolTypeEnum |
Methods of conditioning or heating a room or building |
MIXS:0000767 | substructure_type | * SubstructureTypeEnum |
The substructure or under building is that largely hidden section of the buil... |
MIXS:0000768 | building_setting | 1 BuildingSettingEnum |
A location (geography) where a building is set |
MIXS:0000769 | light_type | 1..* LightTypeEnum |
Application of light to achieve some practical or aesthetic effect |
MIXS:0000216 | samp_sort_meth | * String |
Method by which samples are sorted; open face filter collecting total suspend... |
MIXS:0000770 | space_typ_state | 1 SpaceTypStateEnum |
Customary or normal state of the space |
MIXS:0000771 | typ_occup_density | 1 Float |
Customary or normal density of occupants |
MIXS:0000772 | occup_samp | 1 Float |
Number of occupants present at time of sample within the given space |
MIXS:0000217 | occup_density_samp | 1 Float |
Average number of occupants at time of sampling per square footage |
MIXS:0000218 | address | 0..1 String |
The street name and building number where the sampling occurred |
MIXS:0000219 | adj_room | 0..1 String |
List of rooms (room number, room name) immediately adjacent to the sampling r... |
MIXS:0000773 | aero_struc | 0..1 AeroStrucEnum |
Aerospace structures typically consist of thin plates with stiffeners for the... |
MIXS:0000140 | amount_light | 0..1 String |
The unit of illuminance and luminous emittance, measuring luminous flux per u... |
MIXS:0000774 | arch_struc | 0..1 ArchStrucEnum |
An architectural structure is a human-made, free-standing, immobile outdoor c... |
MIXS:0000775 | avg_occup | 0..1 Float |
Daily average occupancy of room |
MIXS:0000141 | avg_dew_point | 0..1 String |
The average of dew point measures taken at the beginning of every hour over a... |
MIXS:0000142 | avg_temp | 0..1 String |
The average of temperatures taken at the beginning of every hour over a 24 ho... |
MIXS:0000776 | bathroom_count | 0..1 Integer |
The number of bathrooms in the building |
MIXS:0000777 | bedroom_count | 0..1 Integer |
The number of bedrooms in the building |
MIXS:0000145 | built_struc_age | 0..1 String |
The age of the built structure since construction |
MIXS:0000778 | built_struc_set | 0..1 BuiltStrucSetEnum |
The characterization of the location of the built structure as high or low hu... |
MIXS:0000721 | built_struc_type | 0..1 String |
A physical structure that is a body or assemblage of bodies in space to form ... |
MIXS:0000148 | ceil_area | 0..1 String |
The area of the ceiling space within the room |
MIXS:0000779 | ceil_cond | 0..1 DamagedEnum |
The physical condition of the ceiling at the time of sampling; photos or vide... |
MIXS:0000780 | ceil_finish_mat | 0..1 CeilFinishMatEnum |
The type of material used to finish a ceiling |
MIXS:0000781 | ceil_water_mold | 0..1 MoldVisibilityEnum |
Signs of the presence of mold or mildew on the ceiling |
MIXS:0000782 | ceil_struc | 0..1 CeilStrucEnum |
The construction format of the ceiling |
MIXS:0000783 | ceil_texture | 0..1 CeilingWallTextureEnum |
The feel, appearance, or consistency of a ceiling surface |
MIXS:0000143 | ceil_thermal_mass | 0..1 String |
The ability of the ceiling to provide inertia against temperature fluctuation... |
MIXS:0000784 | ceil_type | 0..1 CeilTypeEnum |
The type of ceiling according to the ceiling's appearance or construction |
MIXS:0000785 | cool_syst_id | 0..1 Integer |
The cooling system identifier |
MIXS:0000786 | date_last_rain | 0..1 Datetime |
The date of the last time it rained |
MIXS:0000787 | build_docs | 0..1 BuildDocsEnum |
The building design, construction and operation documents |
MIXS:0000158 | door_size | 0..1 String |
The size of the door |
MIXS:0000788 | door_cond | 0..1 DamagedRupturedEnum |
The phsical condition of the door |
MIXS:0000789 | door_direct | 0..1 DoorDirectEnum |
The direction the door opens |
MIXS:0000790 | door_loc | 0..1 CompassDirections8Enum |
The relative location of the door in the room |
MIXS:0000791 | door_mat | 0..1 DoorMatEnum |
The material the door is composed of |
MIXS:0000792 | door_move | 0..1 DoorMoveEnum |
The type of movement of the door |
MIXS:0000793 | door_water_mold | 0..1 MoldVisibilityEnum |
Signs of the presence of mold or mildew on a door |
MIXS:0000794 | door_type | 0..1 DoorTypeEnum |
The type of door material |
MIXS:0000795 | door_comp_type | 0..1 DoorCompTypeEnum |
The composite type of the door |
MIXS:0000796 | door_type_metal | 0..1 DoorTypeMetalEnum |
The type of metal door |
MIXS:0000797 | door_type_wood | 0..1 String |
The type of wood door |
MIXS:0000798 | drawings | 0..1 DrawingsEnum |
The buildings architectural drawings; if design is chosen, indicate phase-con... |
MIXS:0000799 | elevator | 0..1 Integer |
The number of elevators within the built structure |
MIXS:0000800 | escalator | 0..1 Integer |
The number of escalators within the built structure |
MIXS:0000144 | exp_duct | 0..1 String |
The amount of exposed ductwork in the room |
MIXS:0000220 | exp_pipe | 0..1 String |
The number of exposed pipes in the room |
MIXS:0000170 | ext_door | 0..1 Integer |
The number of exterior doors in the built structure |
MIXS:0000802 | fireplace_type | 0..1 FireplaceTypeEnum |
A firebox with chimney |
MIXS:0000164 | floor_age | 0..1 String |
The time period since installment of the carpet or flooring |
MIXS:0000165 | floor_area | 0..1 String |
The area of the floor space within the room |
MIXS:0000803 | floor_cond | 0..1 DamagedEnum |
The physical condition of the floor at the time of sampling; photos or video ... |
MIXS:0000225 | floor_count | 0..1 Integer |
The number of floors in the building, including basements and mechanical pent... |
MIXS:0000804 | floor_finish_mat | 0..1 String |
The floor covering type; the finished surface that is walked on |
MIXS:0000805 | floor_water_mold | 0..1 FloorWaterMoldEnum |
Signs of the presence of mold or mildew in a room |
MIXS:0000806 | floor_struc | 0..1 FloorStrucEnum |
Refers to the structural elements and subfloor upon which the finish flooring... |
MIXS:0000166 | floor_thermal_mass | 0..1 String |
The ability of the floor to provide inertia against temperature fluctuations |
MIXS:0000226 | freq_clean | 0..1 FreqCleanEnum |
The number of times the sample location is cleaned |
MIXS:0000227 | freq_cook | 0..1 String |
The number of times a meal is cooked per week |
MIXS:0000807 | furniture | 0..1 FurnitureEnum |
The types of furniture present in the sampled room |
MIXS:0000808 | gender_restroom | 0..1 GenderRestroomEnum |
The gender type of the restroom |
MIXS:0000228 | hall_count | 0..1 Integer |
The total count of hallways and cooridors in the built structure |
MIXS:0000809 | handidness | 0..1 HandidnessEnum |
The handidness of the individual sampled |
MIXS:0000810 | heat_deliv_loc | 0..1 CompassDirections8Enum |
The location of heat delivery within the room |
MIXS:0000812 | heat_sys_deliv_meth | 0..1 HeatSysDelivMethEnum |
The method by which the heat is delivered through the system |
MIXS:0000833 | heat_system_id | 0..1 Integer |
The heating system identifier |
MIXS:0000167 | height_carper_fiber | 0..1 String |
The average carpet fiber height in the indoor environment |
MIXS:0000168 | inside_lux | 0..1 String |
The recorded value at sampling time (power density) |
MIXS:0000813 | int_wall_cond | 0..1 DamagedEnum |
The physical condition of the wall at the time of sampling; photos or video p... |
MIXS:0000814 | last_clean | 0..1 Datetime |
The last time the floor was cleaned (swept, mopped, vacuumed) |
MIXS:0000229 | max_occup | 0..1 String |
The maximum amount of people allowed in the indoor environment |
MIXS:0000815 | mech_struc | 0..1 MechStrucEnum |
mechanical structure: a moving structure |
MIXS:0000230 | number_plants | 0..1 String |
The number of plant(s) in the sampling space |
MIXS:0000231 | number_pets | 0..1 String |
The number of pets residing in the sampled space |
MIXS:0000232 | number_resident | 0..1 String |
The number of individuals currently occupying in the sampling location |
MIXS:0000816 | occup_document | 0..1 OccupDocumentEnum |
The type of documentation of occupancy |
MIXS:0000817 | ext_wall_orient | 0..1 CompassDirections8Enum |
The orientation of the exterior wall |
MIXS:0000818 | ext_window_orient | 0..1 CompassDirections8Enum |
The compass direction the exterior window of the room is facing |
MIXS:0000188 | rel_humidity_out | 0..1 String |
The recorded outside relative humidity value at the time of sampling |
MIXS:0000819 | pres_animal_insect | 0..1 String |
The type and number of animals or insects present in the sampling space |
MIXS:0000820 | quad_pos | 0..1 QuadPosEnum |
The quadrant position of the sampling room within the building |
MIXS:0000821 | rel_samp_loc | 0..1 RelSampLocEnum |
The sampling location within the train car |
MIXS:0000169 | room_air_exch_rate | 0..1 String |
The rate at which outside air replaces indoor air in a given space |
MIXS:0000233 | room_architec_elem | 0..1 String |
The unique details and component parts that, together, form the architecture ... |
MIXS:0000822 | room_condt | 0..1 RoomCondtEnum |
The condition of the room at the time of sampling |
MIXS:0000234 | room_count | 0..1 Integer |
The total count of rooms in the built structure including all room types |
MIXS:0000192 | room_dim | 0..1 String |
The length, width and height of sampling room |
MIXS:0000193 | room_door_dist | 0..1 String |
Distance between doors (meters) in the hallway between the sampling room and ... |
MIXS:0000823 | room_loc | 0..1 RoomLocEnum |
The position of the room within the building |
MIXS:0000235 | room_moist_dam_hist | 0..1 Integer |
The history of moisture damage or mold in the past 12 months |
MIXS:0000194 | room_net_area | 0..1 String |
The net floor area of sampling room |
MIXS:0000236 | room_occup | 0..1 String |
Count of room occupancy at time of sampling |
MIXS:0000824 | room_samp_pos | 0..1 RoomSampPosEnum |
The horizontal sampling position in the room relative to architectural elemen... |
MIXS:0000825 | room_type | 0..1 String |
The main purpose or activity of the sampling room |
MIXS:0000195 | room_vol | 0..1 String |
Volume of sampling room |
MIXS:0000237 | room_window_count | 0..1 Integer |
Number of windows in the room |
MIXS:0000826 | room_connected | 0..1 RoomConnectedEnum |
List of rooms connected to the sampling room by a doorway |
MIXS:0000238 | room_hallway | 0..1 String |
List of room(s) (room number, room name) located in the same hallway as sampl... |
MIXS:0000242 | room_door_share | 0..1 String |
List of room(s) (room number, room name) sharing a door with the sampling roo... |
MIXS:0000243 | room_wall_share | 0..1 String |
List of room(s) (room number, room name) sharing a wall with the sampling roo... |
MIXS:0000827 | samp_weather | 0..1 SampWeatherEnum |
The weather on the sampling day |
MIXS:0000828 | samp_floor | 0..1 String |
The floor of the building, where the sampling room is located |
MIXS:0000244 | samp_room_id | 0..1 Integer |
Sampling room number |
MIXS:0000196 | samp_time_out | 0..1 String |
The recent and long term history of outside sampling |
MIXS:0000829 | season | 0..1 String |
The season when sampling occurred |
MIXS:0000830 | season_use | 0..1 SeasonUseEnum |
The seasons the space is occupied |
MIXS:0000831 | shading_device_cond | 0..1 DamagedRupturedEnum |
The physical condition of the shading device at the time of sampling |
MIXS:0000832 | shading_device_loc | 0..1 ShadingDeviceLocEnum |
The location of the shading device in relation to the built structure |
MIXS:0000245 | shading_device_mat | 0..1 String |
The material the shading device is composed of |
MIXS:0000834 | shad_dev_water_mold | 0..1 MoldVisibilityEnum |
Signs of the presence of mold or mildew on the shading device |
MIXS:0000835 | shading_device_type | 0..1 ShadingDeviceTypeEnum |
The type of shading device |
MIXS:0000214 | specific_humidity | 0..1 String |
The mass of water vapour in a unit mass of moist air, usually expressed as gr... |
MIXS:0000836 | specific | 0..1 SpecificEnum |
The building specifications |
MIXS:0000197 | temp_out | 0..1 String |
The recorded temperature value at sampling time outside |
MIXS:0000837 | train_line | 0..1 TrainLineEnum |
The subway line name |
MIXS:0000838 | train_stat_loc | 0..1 TrainStatLocEnum |
The train station collection location |
MIXS:0000839 | train_stop_loc | 0..1 TrainStopLocEnum |
The train stop collection location |
MIXS:0000840 | vis_media | 0..1 String |
The building visual media |
MIXS:0000198 | wall_area | 0..1 String |
The total area of the sampled room's walls |
MIXS:0000841 | wall_const_type | 0..1 WallConstTypeEnum |
The building class of the wall defined by the composition of the building ele... |
MIXS:0000842 | wall_finish_mat | 0..1 WallFinishMatEnum |
The material utilized to finish the outer most layer of the wall |
MIXS:0000221 | wall_height | 0..1 String |
The average height of the walls in the sampled room |
MIXS:0000843 | wall_loc | 0..1 CompassDirections8Enum |
The relative location of the wall within the room |
MIXS:0000844 | wall_water_mold | 0..1 MoldVisibilityEnum |
Signs of the presence of mold or mildew on a wall |
MIXS:0000845 | wall_surf_treatment | 0..1 WallSurfTreatmentEnum |
The surface treatment of interior wall |
MIXS:0000846 | wall_texture | 0..1 CeilingWallTextureEnum |
The feel, appearance, or consistency of a wall surface |
MIXS:0000222 | wall_thermal_mass | 0..1 String |
The ability of the wall to provide inertia against temperature fluctuations |
MIXS:0000223 | water_feat_size | 0..1 String |
The size of the water feature |
MIXS:0000847 | water_feat_type | 0..1 WaterFeatTypeEnum |
The type of water feature present within the building being sampled |
MIXS:0000848 | weekday | 0..1 WeekdayEnum |
The day of the week when sampling occurred |
MIXS:0000224 | window_size | 0..1 String |
The window's length and width |
MIXS:0000849 | window_cond | 0..1 DamagedRupturedEnum |
The physical condition of the window at the time of sampling |
MIXS:0000850 | window_cover | 0..1 WindowCoverEnum |
The type of window covering |
MIXS:0000851 | window_horiz_pos | 0..1 WindowHorizPosEnum |
The horizontal position of the window on the wall |
MIXS:0000852 | window_loc | 0..1 CompassDirections8Enum |
The relative location of the window within the room |
MIXS:0000853 | window_mat | 0..1 WindowMatEnum |
The type of material used to finish a window |
MIXS:0000246 | window_open_freq | 0..1 Integer |
The number of times windows are opened per week |
MIXS:0000854 | window_water_mold | 0..1 MoldVisibilityEnum |
Signs of the presence of mold or mildew on the window |
MIXS:0000855 | window_status | 0..1 WindowStatusEnum |
Defines whether the windows were open or closed during environmental testing |
MIXS:0000856 | window_type | 0..1 WindowTypeEnum |
The type of windows |
MIXS:0000857 | window_vert_pos | 0..1 WindowVertPosEnum |
The vertical position of the window on the wall |
LinkML Source
Direct
name: MimarksCBuiltEnvironment
description: MIxS Data that comply with the MimarksC checklist and the BuiltEnvironment
Extension
title: MimarksC combined with BuiltEnvironment
in_subset:
- combination_classes
from_schema: https://w3id.org/mixs
is_a: BuiltEnvironment
mixins:
- MimarksC
class_uri: MIXS:0010009_0016001
Induced
name: MimarksCBuiltEnvironment
description: MIxS Data that comply with the MimarksC checklist and the BuiltEnvironment
Extension
title: MimarksC combined with BuiltEnvironment
in_subset:
- combination_classes
from_schema: https://w3id.org/mixs
is_a: BuiltEnvironment
mixins:
- MimarksC
attributes:
samp_name:
name: samp_name
annotations:
Preferred_unit:
tag: Preferred_unit
value: ''
description: A local identifier or name that for the material sample used for
extracting nucleic acids, and subsequent sequencing. It can refer either to
the original material collected or to any derived sub-samples. It can have any
format, but we suggest that you make it concise, unique and consistent within
your lab, and as informative as possible. INSDC requires every sample name from
a single Submitter to be unique. Use of a globally unique identifier for the
field source_mat_id is recommended in addition to sample_name
title: sample name
examples:
- value: ISDsoil1
in_subset:
- investigation
from_schema: https://w3id.org/mixs
keywords:
- sample
slot_uri: MIXS:0001107
alias: samp_name
owner: MimarksCBuiltEnvironment
domain_of:
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- Air
- BuiltEnvironment
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- WastewaterSludge
- Water
range: string
required: true
pcr_primers:
name: pcr_primers
annotations:
Expected_value:
tag: Expected_value
value: 'FWD: forward primer sequence;REV:reverse primer sequence'
description: PCR primers that were used to amplify the sequence of the targeted
gene, locus or subfragment. This field should contain all the primers used for
a single PCR reaction if multiple forward or reverse primers are present in
a single PCR reaction. The primer sequence should be reported in uppercase letters
title: pcr primers
examples:
- value: FWD:GTGCCAGCMGCCGCGGTAA;REV:GGACTACHVGGGTWTCTAAT
in_subset:
- sequencing
from_schema: https://w3id.org/mixs
keywords:
- pcr
string_serialization: FWD:{dna};REV:{dna}
slot_uri: MIXS:0000046
alias: pcr_primers
owner: MimarksCBuiltEnvironment
domain_of:
- MimarksC
- MimarksS
- Agriculture
range: string
recommended: true
nucl_acid_amp:
name: nucl_acid_amp
description: A link to a literature reference, electronic resource or a standard
operating procedure (SOP), that describes the enzymatic amplification (PCR,
TMA, NASBA) of specific nucleic acids
title: nucleic acid amplification
examples:
- value: https://phylogenomics.me/protocols/16s-pcr-protocol/
in_subset:
- sequencing
from_schema: https://w3id.org/mixs
slot_uri: MIXS:0000038
alias: nucl_acid_amp
owner: MimarksCBuiltEnvironment
domain_of:
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- Agriculture
range: string
recommended: true
pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$
structured_pattern:
syntax: ^{PMID}|{DOI}|{URL}$
interpolated: true
partial_match: true
target_subfragment:
name: target_subfragment
description: Name of subfragment of a gene or locus. Important to e.g. identify
special regions on marker genes like V6 on 16S rRNA
title: target subfragment
examples:
- value: V6, V9, ITS
in_subset:
- sequencing
from_schema: https://w3id.org/mixs
keywords:
- target
slot_uri: MIXS:0000045
alias: target_subfragment
owner: MimarksCBuiltEnvironment
domain_of:
- MimarksC
- MimarksS
- Agriculture
range: string
recommended: true
temp:
name: temp
annotations:
Preferred_unit:
tag: Preferred_unit
value: degree Celsius
description: Temperature of the sample at the time of sampling
title: temperature
examples:
- value: 25 degree Celsius
in_subset:
- environment
from_schema: https://w3id.org/mixs
keywords:
- temperature
slot_uri: MIXS:0000113
alias: temp
owner: MimarksCBuiltEnvironment
domain_of:
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- Agriculture
- Air
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- WastewaterSludge
- Water
range: string
recommended: true
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
pcr_cond:
name: pcr_cond
annotations:
Expected_value:
tag: Expected_value
value: initial denaturation:degrees_minutes;annealing:degrees_minutes;elongation:degrees_minutes;final
elongation:degrees_minutes;total cycles
description: Description of reaction conditions and components of polymerase chain
reaction performed during library preparation.
title: pcr conditions
examples:
- value: initial denaturation:94_3;annealing:50_1;elongation:72_1.5;final elongation:72_10;35
- value: initial denaturation:94degC_1.5min
in_subset:
- sequencing
from_schema: https://w3id.org/mixs
keywords:
- condition
- pcr
string_serialization: initial denaturation:degrees_minutes;annealing:degrees_minutes;elongation:degrees_minutes;final
elongation:degrees_minutes;total cycles
slot_uri: MIXS:0000049
alias: pcr_cond
owner: MimarksCBuiltEnvironment
domain_of:
- MimarksC
- MimarksS
- Agriculture
range: string
recommended: true
nucl_acid_ext:
name: nucl_acid_ext
description: A link to a literature reference, electronic resource or a standard
operating procedure (SOP), that describes the material separation to recover
the nucleic acid fraction from a sample
title: nucleic acid extraction
examples:
- value: https://mobio.com/media/wysiwyg/pdfs/protocols/12888.pdf
in_subset:
- sequencing
from_schema: https://w3id.org/mixs
slot_uri: MIXS:0000037
alias: nucl_acid_ext
owner: MimarksCBuiltEnvironment
domain_of:
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
recommended: true
pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$
structured_pattern:
syntax: ^{PMID}|{DOI}|{URL}$
interpolated: true
partial_match: true
samp_size:
name: samp_size
description: The total amount or size (volume (ml), mass (g) or area (m2) ) of
sample collected
title: amount or size of sample collected
examples:
- value: 5 liter
in_subset:
- nucleic acid sequence source
from_schema: https://w3id.org/mixs
keywords:
- sample
- size
slot_uri: MIXS:0000001
alias: samp_size
owner: MimarksCBuiltEnvironment
domain_of:
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
isol_growth_condt:
name: isol_growth_condt
description: Publication reference in the form of pubmed ID (pmid), digital object
identifier (doi) or url for isolation and growth condition specifications of
the organism/material
title: isolation and growth condition
examples:
- value: doi:10.1016/j.syapm.2018.01.009
in_subset:
- nucleic acid sequence source
from_schema: https://w3id.org/mixs
keywords:
- condition
- growth
- isolation
slot_uri: MIXS:0000003
alias: isol_growth_condt
owner: MimarksCBuiltEnvironment
domain_of:
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- MimarksC
- Agriculture
range: string
required: true
pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$
structured_pattern:
syntax: ^{PMID}|{DOI}|{URL}$
interpolated: true
partial_match: true
alt:
name: alt
annotations:
Preferred_unit:
tag: Preferred_unit
value: meter
description: Heights of objects such as airplanes, space shuttles, rockets, atmospheric
balloons and heights of places such as atmospheric layers and clouds. It is
used to measure the height of an object which is above the earth's surface.
In this context, the altitude measurement is the vertical distance between the
earth's surface above sea level and the sampled position in the air
title: altitude
examples:
- value: 100 meter
in_subset:
- environment
from_schema: https://w3id.org/mixs
slot_uri: MIXS:0000094
alias: alt
owner: MimarksCBuiltEnvironment
domain_of:
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- Air
- HostAssociated
- MiscellaneousNaturalOrArtificialEnvironment
- SymbiontAssociated
range: string
recommended: true
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
source_mat_id:
name: source_mat_id
annotations:
Expected_value:
tag: Expected_value
value: 'for cultures of microorganisms: identifiers for two culture collections;
for other material a unique arbitrary identifer'
description: A unique identifier assigned to a material sample (as defined by
http://rs.tdwg.org/dwc/terms/materialSampleID, and as opposed to a particular
digital record of a material sample) used for extracting nucleic acids, and
subsequent sequencing. The identifier can refer either to the original material
collected or to any derived sub-samples. The INSDC qualifiers /specimen_voucher,
/bio_material, or /culture_collection may or may not share the same value as
the source_mat_id field. For instance, the /specimen_voucher qualifier and source_mat_id
may both contain 'UAM:Herps:14' , referring to both the specimen voucher and
sampled tissue with the same identifier. However, the /culture_collection qualifier
may refer to a value from an initial culture (e.g. ATCC:11775) while source_mat_id
would refer to an identifier from some derived culture from which the nucleic
acids were extracted (e.g. xatc123 or ark:/2154/R2)
title: source material identifiers
examples:
- value: MPI012345
in_subset:
- nucleic acid sequence source
from_schema: https://w3id.org/mixs
keywords:
- identifier
- material
- source
slot_uri: MIXS:0000026
alias: source_mat_id
owner: MimarksCBuiltEnvironment
domain_of:
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- Agriculture
- SymbiontAssociated
range: string
recommended: true
multivalued: true
extrachrom_elements:
name: extrachrom_elements
description: Do plasmids exist of significant phenotypic consequence (e.g. ones
that determine virulence or antibiotic resistance). Megaplasmids? Other plasmids
(borrelia has 15+ plasmids)
title: extrachromosomal elements
examples:
- value: '5'
in_subset:
- nucleic acid sequence source
from_schema: https://w3id.org/mixs
slot_uri: MIXS:0000023
alias: extrachrom_elements
owner: MimarksCBuiltEnvironment
domain_of:
- MigsBa
- MigsEu
- MigsOrg
- MimarksC
range: integer
samp_vol_we_dna_ext:
name: samp_vol_we_dna_ext
annotations:
Preferred_unit:
tag: Preferred_unit
value: milliliter, gram, milligram, square centimeter
description: 'Volume (ml) or mass (g) of total collected sample processed for
DNA extraction. Note: total sample collected should be entered under the term
Sample Size (MIXS:0000001)'
title: sample volume or weight for DNA extraction
examples:
- value: 1500 milliliter
in_subset:
- nucleic acid sequence source
from_schema: https://w3id.org/mixs
keywords:
- dna
- sample
- volume
- weight
slot_uri: MIXS:0000111
alias: samp_vol_we_dna_ext
owner: MimarksCBuiltEnvironment
domain_of:
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- Agriculture
- Air
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- WastewaterSludge
- Water
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
rel_to_oxygen:
name: rel_to_oxygen
description: Is this organism an aerobe, anaerobe? Please note that aerobic and
anaerobic are valid descriptors for microbial environments
title: relationship to oxygen
examples:
- value: aerobe
in_subset:
- nucleic acid sequence source
from_schema: https://w3id.org/mixs
keywords:
- oxygen
- relationship
slot_uri: MIXS:0000015
alias: rel_to_oxygen
owner: MimarksCBuiltEnvironment
domain_of:
- MigsBa
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
range: RelToOxygenEnum
recommended: true
samp_collect_device:
name: samp_collect_device
annotations:
Expected_value:
tag: Expected_value
value: device name
description: The device used to collect an environmental sample. This field accepts
terms listed under environmental sampling device (http://purl.obolibrary.org/obo/ENVO).
This field also accepts terms listed under specimen collection device (http://purl.obolibrary.org/obo/GENEPIO_0002094)
title: sample collection device
examples:
- value: swab, biopsy, niskin bottle, push core, drag swab [GENEPIO:0002713]
in_subset:
- nucleic acid sequence source
from_schema: https://w3id.org/mixs
keywords:
- device
- sample
string_serialization: '{termLabel} [{termID}]|{text}'
slot_uri: MIXS:0000002
alias: samp_collect_device
owner: MimarksCBuiltEnvironment
domain_of:
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
biotic_relationship:
name: biotic_relationship
description: Description of relationship(s) between the subject organism and other
organism(s) it is associated with. E.g., parasite on species X; mutualist with
species Y. The target organism is the subject of the relationship, and the other
organism(s) is the object
title: observed biotic relationship
examples:
- value: free living
in_subset:
- nucleic acid sequence source
from_schema: https://w3id.org/mixs
keywords:
- observed
- relationship
slot_uri: MIXS:0000028
alias: biotic_relationship
owner: MimarksCBuiltEnvironment
domain_of:
- MigsBa
- MigsEu
- MigsVi
- MimarksC
- Miuvig
- Agriculture
range: BioticRelationshipEnum
recommended: true
seq_quality_check:
name: seq_quality_check
annotations:
Expected_value:
tag: Expected_value
value: none or manually edited
description: Indicate if the sequence has been called by automatic systems (none)
or undergone a manual editing procedure (e.g. by inspecting the raw data or
chromatograms). Applied only for sequences that are not submitted to SRA,ENA
or DRA
title: sequence quality check
examples:
- value: none
in_subset:
- sequencing
from_schema: https://w3id.org/mixs
keywords:
- quality
slot_uri: MIXS:0000051
alias: seq_quality_check
owner: MimarksCBuiltEnvironment
domain_of:
- MimarksC
- MimarksS
- Agriculture
range: SeqQualityCheckEnum
recommended: true
project_name:
name: project_name
description: Name of the project within which the sequencing was organized
title: project name
examples:
- value: Forest soil metagenome
in_subset:
- investigation
from_schema: https://w3id.org/mixs
keywords:
- project
slot_uri: MIXS:0000092
alias: project_name
owner: MimarksCBuiltEnvironment
domain_of:
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- Air
- BuiltEnvironment
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- WastewaterSludge
- Water
range: string
required: true
neg_cont_type:
name: neg_cont_type
annotations:
Expected_value:
tag: Expected_value
value: enumeration or text
description: The substance or equipment used as a negative control in an investigation
title: negative control type
in_subset:
- investigation
from_schema: https://w3id.org/mixs
keywords:
- type
slot_uri: MIXS:0001321
alias: neg_cont_type
owner: MimarksCBuiltEnvironment
domain_of:
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
range: NegContTypeEnum
recommended: true
chimera_check:
name: chimera_check
description: Tool(s) used for chimera checking, including version number and parameters,
to discover and remove chimeric sequences. A chimeric sequence is comprised
of two or more phylogenetically distinct parent sequences
title: chimera check software
examples:
- value: uchime;v4.1;default parameters
in_subset:
- sequencing
from_schema: https://w3id.org/mixs
keywords:
- software
slot_uri: MIXS:0000052
alias: chimera_check
owner: MimarksCBuiltEnvironment
domain_of:
- MimarksC
- MimarksS
- Agriculture
range: string
recommended: true
pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{software};{version};{parameters}$
interpolated: true
partial_match: true
trophic_level:
name: trophic_level
description: Trophic levels are the feeding position in a food chain. Microbes
can be a range of producers (e.g. chemolithotroph)
title: trophic level
examples:
- value: heterotroph
in_subset:
- nucleic acid sequence source
from_schema: https://w3id.org/mixs
keywords:
- level
slot_uri: MIXS:0000032
alias: trophic_level
owner: MimarksCBuiltEnvironment
domain_of:
- MigsBa
- MigsEu
- MimarksC
- Agriculture
range: TrophicLevelEnum
recommended: true
pos_cont_type:
name: pos_cont_type
description: The substance, mixture, product, or apparatus used to verify that
a process which is part of an investigation delivers a true positive
title: positive control type
in_subset:
- investigation
from_schema: https://w3id.org/mixs
keywords:
- type
string_serialization: '{term} or {text}'
slot_uri: MIXS:0001322
alias: pos_cont_type
owner: MimarksCBuiltEnvironment
domain_of:
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
range: string
recommended: true
subspecf_gen_lin:
name: subspecf_gen_lin
annotations:
Expected_value:
tag: Expected_value
value: Genetic lineage below lowest rank of NCBI taxonomy, which is subspecies,
e.g. serovar, biotype, ecotype, variety, cultivar
description: Information about the genetic distinctness of the sequenced organism
below the subspecies level, e.g., serovar, serotype, biotype, ecotype, or any
relevant genetic typing schemes like Group I plasmid. Subspecies should not
be recorded in this term, but in the NCBI taxonomy. Supply both the lineage
name and the lineage rank separated by a colon, e.g., biovar:abc123
title: subspecific genetic lineage
examples:
- value: serovar:Newport
in_subset:
- nucleic acid sequence source
from_schema: https://w3id.org/mixs
keywords:
- lineage
string_serialization: '{rank name}:{text}'
slot_uri: MIXS:0000020
alias: subspecf_gen_lin
owner: MimarksCBuiltEnvironment
domain_of:
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- MimarksC
- FoodFoodProductionFacility
range: string
recommended: true
env_local_scale:
name: env_local_scale
annotations:
Expected_value:
tag: Expected_value
value: Environmental entities having causal influences upon the entity at
time of sampling
description: 'Report the entity or entities which are in the sample or specimen
s local vicinity and which you believe have significant causal influences on
your sample or specimen. We recommend using EnvO terms which are of smaller
spatial grain than your entry for env_broad_scale. Terms, such as anatomical
sites, from other OBO Library ontologies which interoperate with EnvO (e.g.
UBERON) are accepted in this field. EnvO documentation about how to use the
field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS'
title: local environmental context
examples:
- value: hillside [ENVO:01000333]
in_subset:
- environment
from_schema: https://w3id.org/mixs
keywords:
- context
- environmental
slot_uri: MIXS:0000013
alias: env_local_scale
owner: MimarksCBuiltEnvironment
domain_of:
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
range: string
required: true
structured_pattern:
syntax: ^{termLabel} \[{termID}\]$
interpolated: true
partial_match: true
samp_mat_process:
name: samp_mat_process
description: A brief description of any processing applied to the sample during
or after retrieving the sample from environment, or a link to the relevant protocol(s)
performed
title: sample material processing
examples:
- value: filtering of seawater, storing samples in ethanol
in_subset:
- nucleic acid sequence source
from_schema: https://w3id.org/mixs
keywords:
- material
- process
- sample
slot_uri: MIXS:0000016
alias: samp_mat_process
owner: MimarksCBuiltEnvironment
domain_of:
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- Agriculture
range: string
recommended: true
depth:
name: depth
annotations:
Preferred_unit:
tag: Preferred_unit
value: meter
description: The vertical distance below local surface. For sediment or soil samples
depth is measured from sediment or soil surface, respectively. Depth can be
reported as an interval for subsurface samples
title: depth
examples:
- value: 10 meter
in_subset:
- environment
from_schema: https://w3id.org/mixs
keywords:
- depth
slot_uri: MIXS:0000018
alias: depth
owner: MimarksCBuiltEnvironment
domain_of:
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- Agriculture
- FoodFarmEnvironment
- HostAssociated
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- WastewaterSludge
- Water
range: string
recommended: true
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
samp_collect_method:
name: samp_collect_method
description: The method employed for collecting the sample
title: sample collection method
examples:
- value: swabbing
in_subset:
- nucleic acid sequence source
from_schema: https://w3id.org/mixs
keywords:
- method
- sample
slot_uri: MIXS:0001225
alias: samp_collect_method
owner: MimarksCBuiltEnvironment
domain_of:
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$|([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{PMID}|{DOI}|{URL}|{text}$
interpolated: true
partial_match: true
env_medium:
name: env_medium
description: 'Report the environmental material(s) immediately surrounding the
sample or specimen at the time of sampling. We recommend using subclasses of
''environmental material'' (http://purl.obolibrary.org/obo/ENVO_00010483). EnvO
documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS
. Terms from other OBO ontologies are permissible as long as they reference
mass/volume nouns (e.g. air, water, blood) and not discrete, countable entities
(e.g. a tree, a leaf, a table top)'
title: environmental medium
examples:
- value: bluegrass field soil [ENVO:00005789]
in_subset:
- environment
from_schema: https://w3id.org/mixs
keywords:
- environmental
slot_uri: MIXS:0000014
alias: env_medium
owner: MimarksCBuiltEnvironment
domain_of:
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
range: string
required: true
pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$
structured_pattern:
syntax: ^{termLabel} \[{termID}\]$
interpolated: true
partial_match: true
samp_taxon_id:
name: samp_taxon_id
description: NCBI taxon id of the sample. Maybe be a single taxon or mixed taxa
sample. Use 'synthetic metagenome for mock community/positive controls, or
'blank sample' for negative controls
title: taxonomy ID of DNA sample
examples:
- value: Gut Metagenome [NCBITaxon:749906]
in_subset:
- investigation
from_schema: https://w3id.org/mixs
keywords:
- dna
- identifier
- sample
- taxon
slot_uri: MIXS:0001320
alias: samp_taxon_id
owner: MimarksCBuiltEnvironment
domain_of:
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
range: string
required: true
pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[NCBITaxon:\d+\]$
structured_pattern:
syntax: ^{text} \[{NCBItaxon_id}\]$
interpolated: true
partial_match: true
geo_loc_name:
name: geo_loc_name
description: The geographical origin of the sample as defined by the country or
sea name followed by specific region name. Country or sea names should be chosen
from the INSDC country list (http://insdc.org/country.html), or the GAZ ontology
(http://purl.bioontology.org/ontology/GAZ)
title: geographic location (country and/or sea,region)
examples:
- value: 'USA: Maryland, Bethesda'
in_subset:
- environment
from_schema: https://w3id.org/mixs
keywords:
- geographic
- location
slot_uri: MIXS:0000010
alias: geo_loc_name
owner: MimarksCBuiltEnvironment
domain_of:
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- SymbiontAssociated
range: string
required: true
pattern: '^([^\s-]{1,2}|[^\s-]+.+[^\s-]+): ([^\s-]{1,2}|[^\s-]+.+[^\s-]+), ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$'
structured_pattern:
syntax: '^{text}: {text}, {text}$'
interpolated: true
partial_match: true
collection_date:
name: collection_date
description: 'The time of sampling, either as an instance (single point in time)
or interval. In case no exact time is available, the date/time can be right
truncated i.e. all of these are valid times: 2008-01-23T19:23:10+00:00; 2008-01-23T19:23:10;
2008-01-23; 2008-01; 2008; Except: 2008-01; 2008 all are ISO8601 compliant'
title: collection date
examples:
- value: '2013-03-25T12:42:31+01:00'
in_subset:
- environment
from_schema: https://w3id.org/mixs
keywords:
- date
slot_uri: MIXS:0000011
alias: collection_date
owner: MimarksCBuiltEnvironment
domain_of:
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- SymbiontAssociated
range: datetime
required: true
seq_meth:
name: seq_meth
description: Sequencing machine used. Where possible the term should be taken
from the OBI list of DNA sequencers (http://purl.obolibrary.org/obo/OBI_0400103)
title: sequencing method
examples:
- value: 454 Genome Sequencer FLX [OBI:0000702]
in_subset:
- sequencing
from_schema: https://w3id.org/mixs
keywords:
- method
slot_uri: MIXS:0000050
alias: seq_meth
owner: MimarksCBuiltEnvironment
domain_of:
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
required: true
pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+)|(([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\])$
structured_pattern:
syntax: ^{text}|({termLabel} \[{termID}\])$
interpolated: true
partial_match: true
lat_lon:
name: lat_lon
description: The geographical origin of the sample as defined by latitude and
longitude. The values should be reported in decimal degrees, limited to 8 decimal
points, and in WGS84 system
title: geographic location (latitude and longitude)
examples:
- value: 50.586825 6.408977
in_subset:
- environment
from_schema: https://w3id.org/mixs
keywords:
- geographic
- location
slot_uri: MIXS:0000009
alias: lat_lon
owner: MimarksCBuiltEnvironment
domain_of:
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- SymbiontAssociated
range: string
required: true
pattern: ^(-?((?:[0-8]?[0-9](?:\.\d{0,8})?)|90)) -?[0-9]+(?:\.[0-9]{0,8})?$|^-?(1[0-7]{1,2})$
structured_pattern:
syntax: ^{lat} {lon}$
interpolated: true
partial_match: true
elev:
name: elev
annotations:
Preferred_unit:
tag: Preferred_unit
value: meter
description: Elevation of the sampling site is its height above a fixed reference
point, most commonly the mean sea level. Elevation is mainly used when referring
to points on the earth's surface, while altitude is used for points above the
surface, such as an aircraft in flight or a spacecraft in orbit
title: elevation
examples:
- value: 100 meter
in_subset:
- environment
from_schema: https://w3id.org/mixs
keywords:
- elevation
slot_uri: MIXS:0000093
alias: elev
owner: MimarksCBuiltEnvironment
domain_of:
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- Agriculture
- Air
- HostAssociated
- HydrocarbonResourcesCores
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- Water
range: string
recommended: true
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
env_broad_scale:
name: env_broad_scale
description: 'Report the major environmental system the sample or specimen came
from. The system(s) identified should have a coarse spatial grain, to provide
the general environmental context of where the sampling was done (e.g. in the
desert or a rainforest). We recommend using subclasses of EnvO s biome class: http://purl.obolibrary.org/obo/ENVO_00000428.
EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS'
title: broad-scale environmental context
examples:
- value: rangeland biome [ENVO:01000247]
in_subset:
- environment
from_schema: https://w3id.org/mixs
keywords:
- context
- environmental
slot_uri: MIXS:0000012
alias: env_broad_scale
owner: MimarksCBuiltEnvironment
domain_of:
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
range: string
required: true
pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$
structured_pattern:
syntax: ^{termLabel} \[{termID}\]$
interpolated: true
partial_match: true
experimental_factor:
name: experimental_factor
annotations:
Expected_value:
tag: Expected_value
value: text or EFO and/or OBI
description: Variable aspects of an experiment design that can be used to describe
an experiment, or set of experiments, in an increasingly detailed manner. This
field accepts ontology terms from Experimental Factor Ontology (EFO) and/or
Ontology for Biomedical Investigations (OBI)
title: experimental factor
examples:
- value: time series design [EFO:0001779]
in_subset:
- investigation
from_schema: https://w3id.org/mixs
keywords:
- experimental
- factor
string_serialization: '{termLabel} [{termID}]|{text}'
slot_uri: MIXS:0000008
alias: experimental_factor
owner: MimarksCBuiltEnvironment
domain_of:
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
multivalued: true
pattern: ^\S+.*\S+ \[[a-zA-Z]{2,}:\d+\]$
target_gene:
name: target_gene
description: Targeted gene or locus name for marker gene studies
title: target gene
examples:
- value: 16S rRNA, 18S rRNA, nif, amoA, rpo
in_subset:
- sequencing
from_schema: https://w3id.org/mixs
keywords:
- target
slot_uri: MIXS:0000044
alias: target_gene
owner: MimarksCBuiltEnvironment
domain_of:
- MimarksC
- MimarksS
- Agriculture
range: string
required: true
associated_resource:
name: associated_resource
annotations:
Expected_value:
tag: Expected_value
value: reference to resource
description: A related resource that is referenced, cited, or otherwise associated
to the sequence
title: relevant electronic resources
examples:
- value: http://www.earthmicrobiome.org/
in_subset:
- sequencing
from_schema: https://w3id.org/mixs
keywords:
- resource
string_serialization: '{PMID}|{DOI}|{URL}'
slot_uri: MIXS:0000091
alias: associated_resource
owner: MimarksCBuiltEnvironment
domain_of:
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- Agriculture
range: string
recommended: true
multivalued: true
sop:
name: sop
annotations:
Expected_value:
tag: Expected_value
value: reference to SOP
description: Standard operating procedures used in assembly and/or annotation
of genomes, metagenomes or environmental sequences
title: relevant standard operating procedures
examples:
- value: http://press.igsb.anl.gov/earthmicrobiome/protocols-and-standards/its/
in_subset:
- sequencing
from_schema: https://w3id.org/mixs
keywords:
- procedures
string_serialization: '{PMID}|{DOI}|{URL}'
slot_uri: MIXS:0000090
alias: sop
owner: MimarksCBuiltEnvironment
domain_of:
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- Agriculture
range: string
recommended: true
multivalued: true
surf_material:
name: surf_material
description: Surface materials at the point of sampling
title: surface material
examples:
- value: wood
from_schema: https://w3id.org/mixs
keywords:
- material
- surface
slot_uri: MIXS:0000758
alias: surf_material
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
- FoodFoodProductionFacility
range: SurfMaterialEnum
required: true
recommended: true
surf_air_cont:
name: surf_air_cont
description: Contaminant identified on surface
title: surface-air contaminant
examples:
- value: radon
from_schema: https://w3id.org/mixs
slot_uri: MIXS:0000759
alias: surf_air_cont
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: SurfAirContEnum
recommended: true
multivalued: true
rel_air_humidity:
name: rel_air_humidity
annotations:
Preferred_unit:
tag: Preferred_unit
value: percentage
description: Partial vapor and air pressure, density of the vapor and air, or
by the actual mass of the vapor and air
title: relative air humidity
comments:
- percent or float?
examples:
- value: '0.8'
from_schema: https://w3id.org/mixs
keywords:
- air
- humidity
- relative
slot_uri: MIXS:0000121
alias: rel_air_humidity
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: float
required: true
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
abs_air_humidity:
name: abs_air_humidity
annotations:
Preferred_unit:
tag: Preferred_unit
value: gram per gram, kilogram per kilogram, kilogram, pound
description: Actual mass of water vapor - mh20 - present in the air water vapor
mixture
title: absolute air humidity
examples:
- value: 9 gram per gram
from_schema: https://w3id.org/mixs
keywords:
- absolute
- air
- humidity
slot_uri: MIXS:0000122
alias: abs_air_humidity
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: string
required: true
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
surf_humidity:
name: surf_humidity
annotations:
Preferred_unit:
tag: Preferred_unit
value: percentage
description: 'Surfaces: water activity as a function of air and material moisture'
title: surface humidity
comments:
- percent or float?
examples:
- value: '0.1'
from_schema: https://w3id.org/mixs
keywords:
- humidity
- surface
slot_uri: MIXS:0000123
alias: surf_humidity
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: float
recommended: true
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
air_temp:
name: air_temp
annotations:
Preferred_unit:
tag: Preferred_unit
value: degree Celsius
description: Temperature of the air at the time of sampling
title: air temperature
examples:
- value: 20 degree Celsius
from_schema: https://w3id.org/mixs
keywords:
- air
- temperature
slot_uri: MIXS:0000124
alias: air_temp
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
- FoodFoodProductionFacility
range: string
required: true
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
surf_temp:
name: surf_temp
annotations:
Preferred_unit:
tag: Preferred_unit
value: degree Celsius
description: Temperature of the surface at the time of sampling
title: surface temperature
examples:
- value: 15 degree Celsius
from_schema: https://w3id.org/mixs
keywords:
- surface
- temperature
slot_uri: MIXS:0000125
alias: surf_temp
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: string
recommended: true
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
surf_moisture_ph:
name: surf_moisture_ph
description: ph measurement of surface
title: surface moisture pH
examples:
- value: '7'
from_schema: https://w3id.org/mixs
keywords:
- moisture
- ph
- surface
slot_uri: MIXS:0000760
alias: surf_moisture_ph
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: float
recommended: true
build_occup_type:
name: build_occup_type
description: The primary function for which a building or discrete part of a building
is intended to be used
title: building occupancy type
examples:
- value: market
from_schema: https://w3id.org/mixs
keywords:
- type
slot_uri: MIXS:0000761
alias: build_occup_type
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: BuildOccupTypeEnum
required: true
multivalued: true
surf_moisture:
name: surf_moisture
annotations:
Preferred_unit:
tag: Preferred_unit
value: parts per million, gram per cubic meter, gram per square meter
description: Water held on a surface
title: surface moisture
examples:
- value: 0.01 gram per square meter
from_schema: https://w3id.org/mixs
keywords:
- moisture
- surface
slot_uri: MIXS:0000128
alias: surf_moisture
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: string
recommended: true
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
dew_point:
name: dew_point
annotations:
Preferred_unit:
tag: Preferred_unit
value: degree Celsius
description: The temperature to which a given parcel of humid air must be cooled,
at constant barometric pressure, for water vapor to condense into water
title: dew point
examples:
- value: 22 degree Celsius
from_schema: https://w3id.org/mixs
slot_uri: MIXS:0000129
alias: dew_point
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
carb_dioxide:
name: carb_dioxide
annotations:
Preferred_unit:
tag: Preferred_unit
value: micromole per liter, parts per million
description: Carbon dioxide (gas) amount or concentration at the time of sampling
title: carbon dioxide
examples:
- value: 410 parts per million
from_schema: https://w3id.org/mixs
keywords:
- carbon
slot_uri: MIXS:0000097
alias: carb_dioxide
owner: MimarksCBuiltEnvironment
domain_of:
- Air
- BuiltEnvironment
range: string
required: true
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
ventilation_type:
name: ventilation_type
annotations:
Expected_value:
tag: Expected_value
value: ventilation type name
description: Ventilation system used in the sampled premises
title: ventilation type
examples:
- value: Operable windows
from_schema: https://w3id.org/mixs
keywords:
- type
slot_uri: MIXS:0000756
alias: ventilation_type
owner: MimarksCBuiltEnvironment
domain_of:
- Air
- BuiltEnvironment
- FoodFarmEnvironment
range: string
required: true
multivalued: true
organism_count:
name: organism_count
annotations:
Expected_value:
tag: Expected_value
value: organism name;measurement value;enumeration
description: 'Total cell count of any organism (or group of organisms) per gram,
volume or area of sample, should include name of organism followed by count.
The method that was used for the enumeration (e.g. qPCR, atp, mpn, etc.) Should
also be provided. (example: total prokaryotes; 3.5e7 cells per ml; qpcr)'
title: organism count
examples:
- value: total prokaryotes;3.5e7 cells per milliliter;qPCR
from_schema: https://w3id.org/mixs
keywords:
- count
- organism
string_serialization: '{text};{float} {unit};[ATP|MPN|qPCR|other]'
slot_uri: MIXS:0000103
alias: organism_count
owner: MimarksCBuiltEnvironment
domain_of:
- Agriculture
- Air
- BuiltEnvironment
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
range: string
required: true
multivalued: true
indoor_space:
name: indoor_space
description: A distinguishable space within a structure, the purpose for which
discrete areas of a building is used
title: indoor space
examples:
- value: foyer
from_schema: https://w3id.org/mixs
keywords:
- indoor
slot_uri: MIXS:0000763
alias: indoor_space
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: IndoorSpaceEnum
required: true
indoor_surf:
name: indoor_surf
description: Type of indoor surface
title: indoor surface
examples:
- value: wall
from_schema: https://w3id.org/mixs
keywords:
- indoor
- surface
slot_uri: MIXS:0000764
alias: indoor_surf
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
- FoodFoodProductionFacility
range: IndoorSurfEnum
required: true
recommended: true
filter_type:
name: filter_type
description: A device which removes solid particulates or airborne molecular contaminants
title: filter type
examples:
- value: HEPA
from_schema: https://w3id.org/mixs
keywords:
- filter
- type
slot_uri: MIXS:0000765
alias: filter_type
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: FilterTypeEnum
required: true
multivalued: true
heat_cool_type:
name: heat_cool_type
description: Methods of conditioning or heating a room or building
title: heating and cooling system type
examples:
- value: heat pump
from_schema: https://w3id.org/mixs
keywords:
- type
slot_uri: MIXS:0000766
alias: heat_cool_type
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: HeatCoolTypeEnum
required: true
multivalued: true
substructure_type:
name: substructure_type
description: The substructure or under building is that largely hidden section
of the building which is built off the foundations to the ground floor level
title: substructure type
examples:
- value: basement
from_schema: https://w3id.org/mixs
keywords:
- type
slot_uri: MIXS:0000767
alias: substructure_type
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: SubstructureTypeEnum
multivalued: true
building_setting:
name: building_setting
description: A location (geography) where a building is set
title: building setting
examples:
- value: rural
from_schema: https://w3id.org/mixs
slot_uri: MIXS:0000768
alias: building_setting
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: BuildingSettingEnum
required: true
light_type:
name: light_type
description: Application of light to achieve some practical or aesthetic effect.
Lighting includes the use of both artificial light sources such as lamps and
light fixtures, as well as natural illumination by capturing daylight. Can also
include absence of light
title: light type
examples:
- value: desk lamp
from_schema: https://w3id.org/mixs
keywords:
- light
- type
slot_uri: MIXS:0000769
alias: light_type
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: LightTypeEnum
required: true
multivalued: true
samp_sort_meth:
name: samp_sort_meth
description: Method by which samples are sorted; open face filter collecting total
suspended particles, prefilter to remove particles larger than X micrometers
in diameter, where common values of X would be 10 and 2.5 full size sorting
in a cascade impactor
title: sample size sorting method
from_schema: https://w3id.org/mixs
keywords:
- method
- sample
- size
slot_uri: MIXS:0000216
alias: samp_sort_meth
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: string
multivalued: true
space_typ_state:
name: space_typ_state
description: Customary or normal state of the space
title: space typical state
examples:
- value: typically occupied
from_schema: https://w3id.org/mixs
slot_uri: MIXS:0000770
alias: space_typ_state
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: SpaceTypStateEnum
required: true
typ_occup_density:
name: typ_occup_density
description: Customary or normal density of occupants
title: typical occupant density
examples:
- value: '25'
from_schema: https://w3id.org/mixs
keywords:
- density
slot_uri: MIXS:0000771
alias: typ_occup_density
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: float
required: true
occup_samp:
name: occup_samp
description: Number of occupants present at time of sample within the given space
title: occupancy at sampling
examples:
- value: '10'
from_schema: https://w3id.org/mixs
slot_uri: MIXS:0000772
alias: occup_samp
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: float
required: true
pattern: ^[1-9][0-9]* ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{integer} {text}$
interpolated: true
partial_match: true
occup_density_samp:
name: occup_density_samp
description: Average number of occupants at time of sampling per square footage
title: occupant density at sampling
examples:
- value: '0.1'
from_schema: https://w3id.org/mixs
keywords:
- density
slot_uri: MIXS:0000217
alias: occup_density_samp
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: float
required: true
address:
name: address
description: The street name and building number where the sampling occurred
title: address
from_schema: https://w3id.org/mixs
slot_uri: MIXS:0000218
alias: address
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: string
structured_pattern:
syntax: ^{integer} {text}}$
interpolated: true
partial_match: true
adj_room:
name: adj_room
description: List of rooms (room number, room name) immediately adjacent to the
sampling room
title: adjacent rooms
from_schema: https://w3id.org/mixs
keywords:
- adjacent
- room
slot_uri: MIXS:0000219
alias: adj_room
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: string
pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);[1-9][0-9]*$
structured_pattern:
syntax: ^{room_name};{room_number}$
interpolated: true
partial_match: true
aero_struc:
name: aero_struc
description: Aerospace structures typically consist of thin plates with stiffeners
for the external surfaces, bulkheads and frames to support the shape and fasteners
such as welds, rivets, screws and bolts to hold the components together
title: aerospace structure
examples:
- value: plane
from_schema: https://w3id.org/mixs
slot_uri: MIXS:0000773
alias: aero_struc
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: AeroStrucEnum
amount_light:
name: amount_light
annotations:
Preferred_unit:
tag: Preferred_unit
value: lux, lumens per square meter
description: The unit of illuminance and luminous emittance, measuring luminous
flux per unit area
title: amount of light
from_schema: https://w3id.org/mixs
keywords:
- light
slot_uri: MIXS:0000140
alias: amount_light
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
arch_struc:
name: arch_struc
description: An architectural structure is a human-made, free-standing, immobile
outdoor construction
title: architectural structure
examples:
- value: shed
from_schema: https://w3id.org/mixs
slot_uri: MIXS:0000774
alias: arch_struc
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: ArchStrucEnum
avg_occup:
name: avg_occup
description: Daily average occupancy of room. Indicate the number of person(s)
daily occupying the sampling room
title: average daily occupancy
examples:
- value: '2'
from_schema: https://w3id.org/mixs
keywords:
- average
slot_uri: MIXS:0000775
alias: avg_occup
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
- FoodFoodProductionFacility
range: float
avg_dew_point:
name: avg_dew_point
annotations:
Preferred_unit:
tag: Preferred_unit
value: degree Celsius
description: The average of dew point measures taken at the beginning of every
hour over a 24 hour period on the sampling day
title: average dew point
examples:
- value: 25.5 degree Celsius
from_schema: https://w3id.org/mixs
keywords:
- average
slot_uri: MIXS:0000141
alias: avg_dew_point
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
avg_temp:
name: avg_temp
annotations:
Preferred_unit:
tag: Preferred_unit
value: degree Celsius
description: The average of temperatures taken at the beginning of every hour
over a 24 hour period on the sampling day
title: average temperature
examples:
- value: 12.5 degree Celsius
from_schema: https://w3id.org/mixs
keywords:
- average
- temperature
slot_uri: MIXS:0000142
alias: avg_temp
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
bathroom_count:
name: bathroom_count
description: The number of bathrooms in the building
title: bathroom count
examples:
- value: '1'
from_schema: https://w3id.org/mixs
keywords:
- count
slot_uri: MIXS:0000776
alias: bathroom_count
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: integer
bedroom_count:
name: bedroom_count
description: The number of bedrooms in the building
title: bedroom count
examples:
- value: '2'
from_schema: https://w3id.org/mixs
keywords:
- count
slot_uri: MIXS:0000777
alias: bedroom_count
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: integer
built_struc_age:
name: built_struc_age
annotations:
Preferred_unit:
tag: Preferred_unit
value: year
description: The age of the built structure since construction
title: built structure age
examples:
- value: 15 years
from_schema: https://w3id.org/mixs
keywords:
- age
slot_uri: MIXS:0000145
alias: built_struc_age
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
built_struc_set:
name: built_struc_set
description: The characterization of the location of the built structure as high
or low human density
title: built structure setting
examples:
- value: rural
from_schema: https://w3id.org/mixs
slot_uri: MIXS:0000778
alias: built_struc_set
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: BuiltStrucSetEnum
built_struc_type:
name: built_struc_type
description: A physical structure that is a body or assemblage of bodies in space
to form a system capable of supporting loads
title: built structure type
from_schema: https://w3id.org/mixs
keywords:
- type
slot_uri: MIXS:0000721
alias: built_struc_type
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: string
ceil_area:
name: ceil_area
annotations:
Preferred_unit:
tag: Preferred_unit
value: square meter
description: The area of the ceiling space within the room
title: ceiling area
examples:
- value: 25 square meter
from_schema: https://w3id.org/mixs
keywords:
- area
- ceiling
slot_uri: MIXS:0000148
alias: ceil_area
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
ceil_cond:
name: ceil_cond
description: The physical condition of the ceiling at the time of sampling; photos
or video preferred; use drawings to indicate location of damaged areas
title: ceiling condition
examples:
- value: damaged
from_schema: https://w3id.org/mixs
keywords:
- ceiling
- condition
slot_uri: MIXS:0000779
alias: ceil_cond
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: DamagedEnum
ceil_finish_mat:
name: ceil_finish_mat
description: The type of material used to finish a ceiling
title: ceiling finish material
examples:
- value: stucco
from_schema: https://w3id.org/mixs
keywords:
- ceiling
- material
slot_uri: MIXS:0000780
alias: ceil_finish_mat
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: CeilFinishMatEnum
ceil_water_mold:
name: ceil_water_mold
description: Signs of the presence of mold or mildew on the ceiling
title: ceiling signs of water/mold
examples:
- value: presence of mold visible
from_schema: https://w3id.org/mixs
keywords:
- ceiling
slot_uri: MIXS:0000781
alias: ceil_water_mold
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: MoldVisibilityEnum
ceil_struc:
name: ceil_struc
description: The construction format of the ceiling
title: ceiling structure
examples:
- value: concrete
from_schema: https://w3id.org/mixs
keywords:
- ceiling
slot_uri: MIXS:0000782
alias: ceil_struc
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: CeilStrucEnum
ceil_texture:
name: ceil_texture
description: The feel, appearance, or consistency of a ceiling surface
title: ceiling texture
examples:
- value: popcorn
from_schema: https://w3id.org/mixs
keywords:
- ceiling
- texture
slot_uri: MIXS:0000783
alias: ceil_texture
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: CeilingWallTextureEnum
ceil_thermal_mass:
name: ceil_thermal_mass
annotations:
Preferred_unit:
tag: Preferred_unit
value: joule per degree Celsius
description: The ability of the ceiling to provide inertia against temperature
fluctuations. Generally this means concrete that is exposed. A metal deck that
supports a concrete slab will act thermally as long as it is exposed to room
air flow
title: ceiling thermal mass
from_schema: https://w3id.org/mixs
keywords:
- ceiling
- mass
slot_uri: MIXS:0000143
alias: ceil_thermal_mass
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
ceil_type:
name: ceil_type
description: The type of ceiling according to the ceiling's appearance or construction
title: ceiling type
examples:
- value: coffered
from_schema: https://w3id.org/mixs
keywords:
- ceiling
- type
slot_uri: MIXS:0000784
alias: ceil_type
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: CeilTypeEnum
cool_syst_id:
name: cool_syst_id
description: The cooling system identifier
title: cooling system identifier
examples:
- value: '12345'
from_schema: https://w3id.org/mixs
keywords:
- identifier
slot_uri: MIXS:0000785
alias: cool_syst_id
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: integer
date_last_rain:
name: date_last_rain
description: The date of the last time it rained
title: date last rain
examples:
- value: '2013-03-25T12:42:31+01:00'
from_schema: https://w3id.org/mixs
keywords:
- date
- rain
slot_uri: MIXS:0000786
alias: date_last_rain
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: datetime
build_docs:
name: build_docs
description: The building design, construction and operation documents
title: design, construction, and operation documents
examples:
- value: maintenance plans
from_schema: https://w3id.org/mixs
keywords:
- documents
slot_uri: MIXS:0000787
alias: build_docs
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: BuildDocsEnum
door_size:
name: door_size
annotations:
Preferred_unit:
tag: Preferred_unit
value: square meter
description: The size of the door
title: door area or size
examples:
- value: 2.5 square meter
from_schema: https://w3id.org/mixs
keywords:
- area
- door
- size
slot_uri: MIXS:0000158
alias: door_size
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
door_cond:
name: door_cond
description: The phsical condition of the door
title: door condition
examples:
- value: new
from_schema: https://w3id.org/mixs
keywords:
- condition
- door
slot_uri: MIXS:0000788
alias: door_cond
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: DamagedRupturedEnum
door_direct:
name: door_direct
description: The direction the door opens
title: door direction of opening
examples:
- value: inward
from_schema: https://w3id.org/mixs
keywords:
- direction
- door
slot_uri: MIXS:0000789
alias: door_direct
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: DoorDirectEnum
door_loc:
name: door_loc
description: The relative location of the door in the room
title: door location
examples:
- value: north
from_schema: https://w3id.org/mixs
keywords:
- door
- location
slot_uri: MIXS:0000790
alias: door_loc
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: CompassDirections8Enum
door_mat:
name: door_mat
description: The material the door is composed of
title: door material
examples:
- value: wood
from_schema: https://w3id.org/mixs
keywords:
- door
- material
slot_uri: MIXS:0000791
alias: door_mat
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: DoorMatEnum
door_move:
name: door_move
description: The type of movement of the door
title: door movement
examples:
- value: swinging
from_schema: https://w3id.org/mixs
keywords:
- door
slot_uri: MIXS:0000792
alias: door_move
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: DoorMoveEnum
door_water_mold:
name: door_water_mold
description: Signs of the presence of mold or mildew on a door
title: door signs of water/mold
examples:
- value: presence of mold visible
from_schema: https://w3id.org/mixs
keywords:
- door
slot_uri: MIXS:0000793
alias: door_water_mold
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: MoldVisibilityEnum
door_type:
name: door_type
description: The type of door material
title: door type
examples:
- value: wooden
from_schema: https://w3id.org/mixs
keywords:
- door
- type
slot_uri: MIXS:0000794
alias: door_type
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: DoorTypeEnum
door_comp_type:
name: door_comp_type
description: The composite type of the door
title: door type, composite
examples:
- value: revolving
from_schema: https://w3id.org/mixs
keywords:
- door
- type
slot_uri: MIXS:0000795
alias: door_comp_type
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: DoorCompTypeEnum
door_type_metal:
name: door_type_metal
description: The type of metal door
title: door type, metal
examples:
- value: hollow
from_schema: https://w3id.org/mixs
keywords:
- door
- type
slot_uri: MIXS:0000796
alias: door_type_metal
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: DoorTypeMetalEnum
door_type_wood:
name: door_type_wood
annotations:
Expected_value:
tag: Expected_value
value: enumeration
description: The type of wood door
title: door type, wood
examples:
- value: battened
from_schema: https://w3id.org/mixs
keywords:
- door
- type
string_serialization: '[bettened and ledged|battened|ledged and braced|battened|ledged
and framed|battened|ledged, braced and frame|framed and paneled|glashed or sash|flush|louvered|wire
gauged]'
slot_uri: MIXS:0000797
alias: door_type_wood
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: string
drawings:
name: drawings
description: The buildings architectural drawings; if design is chosen, indicate
phase-conceptual, schematic, design development, and construction documents
title: drawings
examples:
- value: sketch
from_schema: https://w3id.org/mixs
keywords:
- drawings
slot_uri: MIXS:0000798
alias: drawings
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: DrawingsEnum
elevator:
name: elevator
description: The number of elevators within the built structure
title: elevator count
examples:
- value: '2'
from_schema: https://w3id.org/mixs
keywords:
- count
slot_uri: MIXS:0000799
alias: elevator
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: integer
escalator:
name: escalator
description: The number of escalators within the built structure
title: escalator count
examples:
- value: '4'
from_schema: https://w3id.org/mixs
keywords:
- count
slot_uri: MIXS:0000800
alias: escalator
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: integer
exp_duct:
name: exp_duct
annotations:
Preferred_unit:
tag: Preferred_unit
value: square meter
description: The amount of exposed ductwork in the room
title: exposed ductwork
from_schema: https://w3id.org/mixs
slot_uri: MIXS:0000144
alias: exp_duct
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
exp_pipe:
name: exp_pipe
description: The number of exposed pipes in the room
title: exposed pipes
from_schema: https://w3id.org/mixs
keywords:
- pipes
slot_uri: MIXS:0000220
alias: exp_pipe
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: string
pattern: ^[1-9][0-9]* ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{integer} {text}$
interpolated: true
partial_match: true
ext_door:
name: ext_door
description: The number of exterior doors in the built structure
title: exterior door count
from_schema: https://w3id.org/mixs
keywords:
- count
- door
- exterior
slot_uri: MIXS:0000170
alias: ext_door
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: integer
fireplace_type:
name: fireplace_type
description: A firebox with chimney
title: fireplace type
examples:
- value: wood burning
from_schema: https://w3id.org/mixs
keywords:
- type
slot_uri: MIXS:0000802
alias: fireplace_type
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: FireplaceTypeEnum
floor_age:
name: floor_age
annotations:
Preferred_unit:
tag: Preferred_unit
value: years, weeks, days
description: The time period since installment of the carpet or flooring
title: floor age
from_schema: https://w3id.org/mixs
keywords:
- age
- floor
slot_uri: MIXS:0000164
alias: floor_age
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
floor_area:
name: floor_area
annotations:
Preferred_unit:
tag: Preferred_unit
value: square meter
description: The area of the floor space within the room
title: floor area
from_schema: https://w3id.org/mixs
keywords:
- area
- floor
slot_uri: MIXS:0000165
alias: floor_area
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
floor_cond:
name: floor_cond
description: The physical condition of the floor at the time of sampling; photos
or video preferred; use drawings to indicate location of damaged areas
title: floor condition
examples:
- value: new
from_schema: https://w3id.org/mixs
keywords:
- condition
- floor
slot_uri: MIXS:0000803
alias: floor_cond
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: DamagedEnum
floor_count:
name: floor_count
description: The number of floors in the building, including basements and mechanical
penthouse
title: floor count
from_schema: https://w3id.org/mixs
keywords:
- count
- floor
slot_uri: MIXS:0000225
alias: floor_count
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: integer
floor_finish_mat:
name: floor_finish_mat
annotations:
Expected_value:
tag: Expected_value
value: enumeration
description: The floor covering type; the finished surface that is walked on
title: floor finish material
examples:
- value: carpet
from_schema: https://w3id.org/mixs
keywords:
- floor
- material
string_serialization: '[tile|wood strip or parquet|carpet|rug|laminate wood|lineoleum|vinyl
composition tile|sheet vinyl|stone|bamboo|cork|terrazo|concrete|none;specify
unfinished|sealed|clear finish|paint]'
slot_uri: MIXS:0000804
alias: floor_finish_mat
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: string
floor_water_mold:
name: floor_water_mold
description: Signs of the presence of mold or mildew in a room
title: floor signs of water/mold
examples:
- value: ceiling discoloration
from_schema: https://w3id.org/mixs
keywords:
- floor
slot_uri: MIXS:0000805
alias: floor_water_mold
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: FloorWaterMoldEnum
floor_struc:
name: floor_struc
description: Refers to the structural elements and subfloor upon which the finish
flooring is installed
title: floor structure
examples:
- value: concrete
from_schema: https://w3id.org/mixs
keywords:
- floor
slot_uri: MIXS:0000806
alias: floor_struc
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: FloorStrucEnum
floor_thermal_mass:
name: floor_thermal_mass
annotations:
Preferred_unit:
tag: Preferred_unit
value: joule per degree Celsius
description: The ability of the floor to provide inertia against temperature fluctuations
title: floor thermal mass
from_schema: https://w3id.org/mixs
keywords:
- floor
- mass
slot_uri: MIXS:0000166
alias: floor_thermal_mass
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
freq_clean:
name: freq_clean
description: The number of times the sample location is cleaned. Frequency of
cleaning might be on a Daily basis, Weekly, Monthly, Quarterly or Annually
title: frequency of cleaning
examples:
- value: Daily
from_schema: https://w3id.org/mixs
keywords:
- frequency
string_serialization: '[ Daily| Weekly| Monthly| Quarterly | Annually| other]'
slot_uri: MIXS:0000226
alias: freq_clean
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
- FoodFoodProductionFacility
range: FreqCleanEnum
freq_cook:
name: freq_cook
description: The number of times a meal is cooked per week
title: frequency of cooking
from_schema: https://w3id.org/mixs
keywords:
- frequency
slot_uri: MIXS:0000227
alias: freq_cook
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: string
pattern: ^[1-9][0-9]* ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{integer} {text}$
interpolated: true
partial_match: true
furniture:
name: furniture
description: The types of furniture present in the sampled room
title: furniture
examples:
- value: chair
from_schema: https://w3id.org/mixs
slot_uri: MIXS:0000807
alias: furniture
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: FurnitureEnum
gender_restroom:
name: gender_restroom
description: The gender type of the restroom
title: gender of restroom
examples:
- value: male
from_schema: https://w3id.org/mixs
slot_uri: MIXS:0000808
alias: gender_restroom
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: GenderRestroomEnum
hall_count:
name: hall_count
description: The total count of hallways and cooridors in the built structure
title: hallway/corridor count
from_schema: https://w3id.org/mixs
keywords:
- corridor
- count
- hallway
slot_uri: MIXS:0000228
alias: hall_count
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: integer
handidness:
name: handidness
description: The handidness of the individual sampled
title: handidness
examples:
- value: right handedness
from_schema: https://w3id.org/mixs
slot_uri: MIXS:0000809
alias: handidness
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: HandidnessEnum
heat_deliv_loc:
name: heat_deliv_loc
description: The location of heat delivery within the room
title: heating delivery locations
examples:
- value: north
from_schema: https://w3id.org/mixs
keywords:
- delivery
- location
- locations
slot_uri: MIXS:0000810
alias: heat_deliv_loc
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: CompassDirections8Enum
heat_sys_deliv_meth:
name: heat_sys_deliv_meth
description: The method by which the heat is delivered through the system
title: heating system delivery method
examples:
- value: radiant
from_schema: https://w3id.org/mixs
keywords:
- delivery
- method
slot_uri: MIXS:0000812
alias: heat_sys_deliv_meth
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: HeatSysDelivMethEnum
heat_system_id:
name: heat_system_id
description: The heating system identifier
title: heating system identifier
from_schema: https://w3id.org/mixs
keywords:
- identifier
slot_uri: MIXS:0000833
alias: heat_system_id
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: integer
height_carper_fiber:
name: height_carper_fiber
annotations:
Preferred_unit:
tag: Preferred_unit
value: centimeter
description: The average carpet fiber height in the indoor environment
title: height carpet fiber mat
from_schema: https://w3id.org/mixs
keywords:
- height
slot_uri: MIXS:0000167
alias: height_carper_fiber
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
inside_lux:
name: inside_lux
annotations:
Preferred_unit:
tag: Preferred_unit
value: kilowatt per square metre
description: The recorded value at sampling time (power density)
title: inside lux light
from_schema: https://w3id.org/mixs
keywords:
- inside
- light
slot_uri: MIXS:0000168
alias: inside_lux
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
int_wall_cond:
name: int_wall_cond
description: The physical condition of the wall at the time of sampling; photos
or video preferred; use drawings to indicate location of damaged areas
title: interior wall condition
examples:
- value: damaged
from_schema: https://w3id.org/mixs
keywords:
- condition
- interior
- wall
slot_uri: MIXS:0000813
alias: int_wall_cond
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: DamagedEnum
last_clean:
name: last_clean
description: The last time the floor was cleaned (swept, mopped, vacuumed)
title: last time swept/mopped/vacuumed
examples:
- value: '2013-03-25T12:42:31+01:00'
from_schema: https://w3id.org/mixs
keywords:
- time
slot_uri: MIXS:0000814
alias: last_clean
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: datetime
max_occup:
name: max_occup
description: The maximum amount of people allowed in the indoor environment
title: maximum occupancy
from_schema: https://w3id.org/mixs
keywords:
- maximum
slot_uri: MIXS:0000229
alias: max_occup
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: string
pattern: ^[1-9][0-9]* ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{integer} {text}$
interpolated: true
partial_match: true
mech_struc:
name: mech_struc
description: 'mechanical structure: a moving structure'
title: mechanical structure
examples:
- value: elevator
from_schema: https://w3id.org/mixs
slot_uri: MIXS:0000815
alias: mech_struc
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: MechStrucEnum
number_plants:
name: number_plants
description: The number of plant(s) in the sampling space
title: number of houseplants
from_schema: https://w3id.org/mixs
keywords:
- number
slot_uri: MIXS:0000230
alias: number_plants
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: string
pattern: ^[1-9][0-9]* ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{integer} {text}$
interpolated: true
partial_match: true
number_pets:
name: number_pets
description: The number of pets residing in the sampled space
title: number of pets
from_schema: https://w3id.org/mixs
keywords:
- number
slot_uri: MIXS:0000231
alias: number_pets
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: string
pattern: ^[1-9][0-9]* ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{integer} {text}$
interpolated: true
partial_match: true
number_resident:
name: number_resident
description: The number of individuals currently occupying in the sampling location
title: number of residents
from_schema: https://w3id.org/mixs
keywords:
- number
slot_uri: MIXS:0000232
alias: number_resident
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: string
pattern: ^[1-9][0-9]* ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{integer} {text}$
interpolated: true
partial_match: true
occup_document:
name: occup_document
description: The type of documentation of occupancy
title: occupancy documentation
examples:
- value: estimate
from_schema: https://w3id.org/mixs
keywords:
- documentation
slot_uri: MIXS:0000816
alias: occup_document
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: OccupDocumentEnum
ext_wall_orient:
name: ext_wall_orient
description: The orientation of the exterior wall
title: orientations of exterior wall
examples:
- value: northwest
from_schema: https://w3id.org/mixs
keywords:
- exterior
- wall
slot_uri: MIXS:0000817
alias: ext_wall_orient
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: CompassDirections8Enum
ext_window_orient:
name: ext_window_orient
description: The compass direction the exterior window of the room is facing
title: orientations of exterior window
examples:
- value: southwest
from_schema: https://w3id.org/mixs
keywords:
- exterior
- window
slot_uri: MIXS:0000818
alias: ext_window_orient
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: CompassDirections8Enum
rel_humidity_out:
name: rel_humidity_out
annotations:
Preferred_unit:
tag: Preferred_unit
value: gram of air, kilogram of air
description: The recorded outside relative humidity value at the time of sampling
title: outside relative humidity
examples:
- value: 12 per kilogram of air
from_schema: https://w3id.org/mixs
keywords:
- humidity
- relative
slot_uri: MIXS:0000188
alias: rel_humidity_out
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
pres_animal_insect:
name: pres_animal_insect
annotations:
Expected_value:
tag: Expected_value
value: enumeration;count
description: The type and number of animals or insects present in the sampling
space
title: presence of pets, animals, or insects
examples:
- value: cat;5
from_schema: https://w3id.org/mixs
keywords:
- animal
- presence
string_serialization: '[cat|dog|rodent|snake|other];{integer}'
slot_uri: MIXS:0000819
alias: pres_animal_insect
owner: MimarksCBuiltEnvironment
domain_of:
- Agriculture
- BuiltEnvironment
range: string
quad_pos:
name: quad_pos
description: The quadrant position of the sampling room within the building
title: quadrant position
examples:
- value: West side
from_schema: https://w3id.org/mixs
slot_uri: MIXS:0000820
alias: quad_pos
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: QuadPosEnum
rel_samp_loc:
name: rel_samp_loc
description: The sampling location within the train car
title: relative sampling location
examples:
- value: center of car
from_schema: https://w3id.org/mixs
keywords:
- location
- relative
slot_uri: MIXS:0000821
alias: rel_samp_loc
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: RelSampLocEnum
room_air_exch_rate:
name: room_air_exch_rate
annotations:
Preferred_unit:
tag: Preferred_unit
value: liter per hour
description: The rate at which outside air replaces indoor air in a given space
title: room air exchange rate
from_schema: https://w3id.org/mixs
keywords:
- air
- rate
- room
slot_uri: MIXS:0000169
alias: room_air_exch_rate
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
room_architec_elem:
name: room_architec_elem
description: The unique details and component parts that, together, form the architecture
of a distinguisahable space within a built structure
title: room architectural elements
from_schema: https://w3id.org/mixs
keywords:
- room
slot_uri: MIXS:0000233
alias: room_architec_elem
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: string
room_condt:
name: room_condt
description: The condition of the room at the time of sampling
title: room condition
examples:
- value: new
from_schema: https://w3id.org/mixs
keywords:
- condition
- room
slot_uri: MIXS:0000822
alias: room_condt
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: RoomCondtEnum
room_count:
name: room_count
description: The total count of rooms in the built structure including all room
types
title: room count
from_schema: https://w3id.org/mixs
keywords:
- count
- room
slot_uri: MIXS:0000234
alias: room_count
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: integer
room_dim:
name: room_dim
annotations:
Expected_value:
tag: Expected_value
value: measurement value
Preferred_unit:
tag: Preferred_unit
value: meter
description: The length, width and height of sampling room
title: room dimensions
examples:
- value: 4 meter x 4 meter x 4 meter
from_schema: https://w3id.org/mixs
keywords:
- dimensions
- room
string_serialization: '{integer} {unit} x {integer} {unit} x {integer} {unit}'
slot_uri: MIXS:0000192
alias: room_dim
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
- FoodFoodProductionFacility
range: string
room_door_dist:
name: room_door_dist
annotations:
Preferred_unit:
tag: Preferred_unit
value: meter
description: Distance between doors (meters) in the hallway between the sampling
room and adjacent rooms
title: room door distance
from_schema: https://w3id.org/mixs
keywords:
- distance
- door
- room
slot_uri: MIXS:0000193
alias: room_door_dist
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: string
pattern: ^[1-9][0-9]* ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{integer} {text}$
interpolated: true
partial_match: true
room_loc:
name: room_loc
description: The position of the room within the building
title: room location in building
examples:
- value: interior room
from_schema: https://w3id.org/mixs
keywords:
- location
- room
slot_uri: MIXS:0000823
alias: room_loc
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: RoomLocEnum
room_moist_dam_hist:
name: room_moist_dam_hist
description: The history of moisture damage or mold in the past 12 months. Number
of events of moisture damage or mold observed
title: room moisture damage or mold history
from_schema: https://w3id.org/mixs
keywords:
- history
- moisture
- room
slot_uri: MIXS:0000235
alias: room_moist_dam_hist
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: integer
room_net_area:
name: room_net_area
annotations:
Preferred_unit:
tag: Preferred_unit
value: square feet, square meter
description: The net floor area of sampling room. Net area excludes wall thicknesses
title: room net area
from_schema: https://w3id.org/mixs
keywords:
- area
- room
slot_uri: MIXS:0000194
alias: room_net_area
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: string
pattern: ^[1-9][0-9]* ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{integer} {text}$
interpolated: true
partial_match: true
room_occup:
name: room_occup
description: Count of room occupancy at time of sampling
title: room occupancy
from_schema: https://w3id.org/mixs
keywords:
- room
slot_uri: MIXS:0000236
alias: room_occup
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: string
pattern: ^[1-9][0-9]* ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{integer} {text}$
interpolated: true
partial_match: true
room_samp_pos:
name: room_samp_pos
description: The horizontal sampling position in the room relative to architectural
elements
title: room sampling position
examples:
- value: south corner
from_schema: https://w3id.org/mixs
keywords:
- room
slot_uri: MIXS:0000824
alias: room_samp_pos
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: RoomSampPosEnum
room_type:
name: room_type
annotations:
Expected_value:
tag: Expected_value
value: enumeration
description: The main purpose or activity of the sampling room. A room is any
distinguishable space within a structure
title: room type
examples:
- value: bathroom
from_schema: https://w3id.org/mixs
keywords:
- room
- type
string_serialization: '[attic|bathroom|closet|conference room|elevator|examining
room|hallway|kitchen|mail room|private office|open office|stairwell|,restroom|lobby|vestibule|mechanical
or electrical room|data center|laboratory_wet|laboratory_dry|gymnasium|natatorium|auditorium|lockers|cafe|warehouse]'
slot_uri: MIXS:0000825
alias: room_type
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: string
room_vol:
name: room_vol
annotations:
Preferred_unit:
tag: Preferred_unit
value: cubic feet, cubic meter
description: Volume of sampling room
title: room volume
from_schema: https://w3id.org/mixs
keywords:
- room
- volume
slot_uri: MIXS:0000195
alias: room_vol
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: string
pattern: ^[1-9][0-9]* ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{integer} {text}$
interpolated: true
partial_match: true
room_window_count:
name: room_window_count
description: Number of windows in the room
title: room window count
from_schema: https://w3id.org/mixs
keywords:
- count
- room
- window
slot_uri: MIXS:0000237
alias: room_window_count
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: integer
room_connected:
name: room_connected
description: List of rooms connected to the sampling room by a doorway
title: rooms connected by a doorway
examples:
- value: office
from_schema: https://w3id.org/mixs
keywords:
- doorway
- room
slot_uri: MIXS:0000826
alias: room_connected
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: RoomConnectedEnum
room_hallway:
name: room_hallway
description: List of room(s) (room number, room name) located in the same hallway
as sampling room
title: rooms that are on the same hallway
from_schema: https://w3id.org/mixs
keywords:
- hallway
- room
slot_uri: MIXS:0000238
alias: room_hallway
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: string
pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);[1-9][0-9]*$
structured_pattern:
syntax: ^{room_name};{room_number}$
interpolated: true
partial_match: true
room_door_share:
name: room_door_share
description: List of room(s) (room number, room name) sharing a door with the
sampling room
title: rooms that share a door with sampling room
from_schema: https://w3id.org/mixs
keywords:
- door
- room
slot_uri: MIXS:0000242
alias: room_door_share
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: string
pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);[1-9][0-9]*$
structured_pattern:
syntax: ^{room_name};{room_number}$
interpolated: true
partial_match: true
room_wall_share:
name: room_wall_share
description: List of room(s) (room number, room name) sharing a wall with the
sampling room
title: rooms that share a wall with sampling room
from_schema: https://w3id.org/mixs
keywords:
- room
- wall
slot_uri: MIXS:0000243
alias: room_wall_share
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: string
pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);[1-9][0-9]*$
structured_pattern:
syntax: ^{room_name};{room_number}$
interpolated: true
partial_match: true
samp_weather:
name: samp_weather
description: The weather on the sampling day
title: sampling day weather
examples:
- value: foggy
from_schema: https://w3id.org/mixs
keywords:
- day
- weather
slot_uri: MIXS:0000827
alias: samp_weather
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: SampWeatherEnum
samp_floor:
name: samp_floor
annotations:
Expected_value:
tag: Expected_value
value: enumeration
description: The floor of the building, where the sampling room is located
title: sampling floor
examples:
- value: 4th floor
from_schema: https://w3id.org/mixs
keywords:
- floor
string_serialization: '[1st floor|2nd floor|{integer} floor|basement|lobby]'
slot_uri: MIXS:0000828
alias: samp_floor
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
- FoodFoodProductionFacility
range: string
samp_room_id:
name: samp_room_id
description: Sampling room number. This ID should be consistent with the designations
on the building floor plans
title: sampling room ID or name
from_schema: https://w3id.org/mixs
keywords:
- identifier
- room
slot_uri: MIXS:0000244
alias: samp_room_id
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
- FoodFoodProductionFacility
range: integer
samp_time_out:
name: samp_time_out
annotations:
Expected_value:
tag: Expected_value
value: time
Preferred_unit:
tag: Preferred_unit
value: hour
description: The recent and long term history of outside sampling
title: sampling time outside
from_schema: https://w3id.org/mixs
keywords:
- time
string_serialization: '{float}'
slot_uri: MIXS:0000196
alias: samp_time_out
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: string
season:
name: season
annotations:
Expected_value:
tag: Expected_value
value: autumn [NCIT:C94733], spring [NCIT:C94731], summer [NCIT:C94732], winter
[NCIT:C94730]
description: The season when sampling occurred. Any of the four periods into which
the year is divided by the equinoxes and solstices. This field accepts terms
listed under season (http://purl.obolibrary.org/obo/NCIT_C94729)
title: season
comments:
- autumn [NCIT:C94733] does not match ^\\S+.*\\S+ \\[[a-zA-Z]{2,}:\\d+\\]$
- would require ^\\S+.*\\S+ \\[[a-zA-Z]{2,}:[a-zA-Z0-9]\\]$
examples:
- value: autumn [NCIT:C94733]
from_schema: https://w3id.org/mixs
keywords:
- season
string_serialization: '{termLabel} [{termID}]'
slot_uri: MIXS:0000829
alias: season
owner: MimarksCBuiltEnvironment
domain_of:
- Agriculture
- BuiltEnvironment
- FoodFarmEnvironment
range: string
pattern: ^\S+.*\S+ \[[a-zA-Z]{2,}:[a-zA-Z0-9]+\]$
season_use:
name: season_use
description: The seasons the space is occupied
title: seasonal use
examples:
- value: Winter
from_schema: https://w3id.org/mixs
keywords:
- season
- use
slot_uri: MIXS:0000830
alias: season_use
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: SeasonUseEnum
shading_device_cond:
name: shading_device_cond
description: The physical condition of the shading device at the time of sampling
title: shading device condition
examples:
- value: new
from_schema: https://w3id.org/mixs
keywords:
- condition
- device
slot_uri: MIXS:0000831
alias: shading_device_cond
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: DamagedRupturedEnum
shading_device_loc:
name: shading_device_loc
description: The location of the shading device in relation to the built structure
title: shading device location
examples:
- value: exterior
from_schema: https://w3id.org/mixs
keywords:
- device
- location
slot_uri: MIXS:0000832
alias: shading_device_loc
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: ShadingDeviceLocEnum
shading_device_mat:
name: shading_device_mat
annotations:
Expected_value:
tag: Expected_value
value: material name
description: The material the shading device is composed of
title: shading device material
from_schema: https://w3id.org/mixs
keywords:
- device
- material
slot_uri: MIXS:0000245
alias: shading_device_mat
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: string
shad_dev_water_mold:
name: shad_dev_water_mold
description: Signs of the presence of mold or mildew on the shading device
title: shading device signs of water/mold
examples:
- value: no presence of mold visible
from_schema: https://w3id.org/mixs
keywords:
- device
slot_uri: MIXS:0000834
alias: shad_dev_water_mold
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: MoldVisibilityEnum
shading_device_type:
name: shading_device_type
description: The type of shading device
title: shading device type
examples:
- value: slatted aluminum
description: was slatted aluminum awning
from_schema: https://w3id.org/mixs
keywords:
- device
- type
slot_uri: MIXS:0000835
alias: shading_device_type
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: ShadingDeviceTypeEnum
specific_humidity:
name: specific_humidity
annotations:
Preferred_unit:
tag: Preferred_unit
value: gram of air, kilogram of air
description: The mass of water vapour in a unit mass of moist air, usually expressed
as grams of vapour per kilogram of air, or, in air conditioning, as grains per
pound
title: specific humidity
examples:
- value: 15 per kilogram of air
from_schema: https://w3id.org/mixs
keywords:
- humidity
slot_uri: MIXS:0000214
alias: specific_humidity
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
specific:
name: specific
description: 'The building specifications. If design is chosen, indicate phase:
conceptual, schematic, design development, construction documents'
title: specifications
examples:
- value: construction
from_schema: https://w3id.org/mixs
slot_uri: MIXS:0000836
alias: specific
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: SpecificEnum
temp_out:
name: temp_out
annotations:
Preferred_unit:
tag: Preferred_unit
value: degree Celsius
description: The recorded temperature value at sampling time outside
title: temperature outside house
examples:
- value: 5 degree Celsius
from_schema: https://w3id.org/mixs
keywords:
- house
- temperature
slot_uri: MIXS:0000197
alias: temp_out
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
train_line:
name: train_line
description: The subway line name
title: train line
examples:
- value: red
from_schema: https://w3id.org/mixs
keywords:
- train
slot_uri: MIXS:0000837
alias: train_line
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: TrainLineEnum
train_stat_loc:
name: train_stat_loc
description: The train station collection location
title: train station collection location
examples:
- value: forest hills
from_schema: https://w3id.org/mixs
keywords:
- location
- train
slot_uri: MIXS:0000838
alias: train_stat_loc
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: TrainStatLocEnum
train_stop_loc:
name: train_stop_loc
description: The train stop collection location
title: train stop collection location
examples:
- value: end
from_schema: https://w3id.org/mixs
keywords:
- location
- stop
- train
slot_uri: MIXS:0000839
alias: train_stop_loc
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: TrainStopLocEnum
vis_media:
name: vis_media
annotations:
Expected_value:
tag: Expected_value
value: enumeration
description: The building visual media
title: visual media
examples:
- value: 3D scans
from_schema: https://w3id.org/mixs
string_serialization: '[photos|videos|commonly of the building|site context (adjacent
buildings, vegetation, terrain, streets)|interiors|equipment|3D scans]'
slot_uri: MIXS:0000840
alias: vis_media
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: string
wall_area:
name: wall_area
annotations:
Preferred_unit:
tag: Preferred_unit
value: square meter
description: The total area of the sampled room's walls
title: wall area
from_schema: https://w3id.org/mixs
keywords:
- area
- wall
slot_uri: MIXS:0000198
alias: wall_area
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
wall_const_type:
name: wall_const_type
description: The building class of the wall defined by the composition of the
building elements and fire-resistance rating
title: wall construction type
examples:
- value: fire resistive
from_schema: https://w3id.org/mixs
keywords:
- type
- wall
slot_uri: MIXS:0000841
alias: wall_const_type
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: WallConstTypeEnum
wall_finish_mat:
name: wall_finish_mat
description: The material utilized to finish the outer most layer of the wall
title: wall finish material
examples:
- value: wood
from_schema: https://w3id.org/mixs
keywords:
- material
- wall
slot_uri: MIXS:0000842
alias: wall_finish_mat
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: WallFinishMatEnum
wall_height:
name: wall_height
annotations:
Preferred_unit:
tag: Preferred_unit
value: centimeter
description: The average height of the walls in the sampled room
title: wall height
from_schema: https://w3id.org/mixs
keywords:
- height
- wall
slot_uri: MIXS:0000221
alias: wall_height
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
wall_loc:
name: wall_loc
description: The relative location of the wall within the room
title: wall location
examples:
- value: north
from_schema: https://w3id.org/mixs
keywords:
- location
- wall
slot_uri: MIXS:0000843
alias: wall_loc
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: CompassDirections8Enum
wall_water_mold:
name: wall_water_mold
description: Signs of the presence of mold or mildew on a wall
title: wall signs of water/mold
examples:
- value: no presence of mold visible
from_schema: https://w3id.org/mixs
keywords:
- wall
slot_uri: MIXS:0000844
alias: wall_water_mold
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: MoldVisibilityEnum
wall_surf_treatment:
name: wall_surf_treatment
description: The surface treatment of interior wall
title: wall surface treatment
examples:
- value: paneling
from_schema: https://w3id.org/mixs
keywords:
- surface
- treatment
- wall
slot_uri: MIXS:0000845
alias: wall_surf_treatment
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: WallSurfTreatmentEnum
wall_texture:
name: wall_texture
description: The feel, appearance, or consistency of a wall surface
title: wall texture
examples:
- value: popcorn
from_schema: https://w3id.org/mixs
keywords:
- texture
- wall
slot_uri: MIXS:0000846
alias: wall_texture
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: CeilingWallTextureEnum
wall_thermal_mass:
name: wall_thermal_mass
annotations:
Preferred_unit:
tag: Preferred_unit
value: joule per degree Celsius
description: The ability of the wall to provide inertia against temperature fluctuations.
Generally this means concrete or concrete block that is either exposed or covered
only with paint
title: wall thermal mass
from_schema: https://w3id.org/mixs
keywords:
- mass
- wall
slot_uri: MIXS:0000222
alias: wall_thermal_mass
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
water_feat_size:
name: water_feat_size
annotations:
Preferred_unit:
tag: Preferred_unit
value: square meter
description: The size of the water feature
title: water feature size
from_schema: https://w3id.org/mixs
keywords:
- feature
- size
- water
slot_uri: MIXS:0000223
alias: water_feat_size
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
*([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
interpolated: true
partial_match: true
water_feat_type:
name: water_feat_type
description: The type of water feature present within the building being sampled
title: water feature type
examples:
- value: stream
from_schema: https://w3id.org/mixs
keywords:
- feature
- type
- water
slot_uri: MIXS:0000847
alias: water_feat_type
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: WaterFeatTypeEnum
weekday:
name: weekday
description: The day of the week when sampling occurred
title: weekday
examples:
- value: Sunday
from_schema: https://w3id.org/mixs
slot_uri: MIXS:0000848
alias: weekday
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: WeekdayEnum
window_size:
name: window_size
annotations:
Expected_value:
tag: Expected_value
value: measurement value
Preferred_unit:
tag: Preferred_unit
value: inch, meter
description: The window's length and width
title: window area/size
from_schema: https://w3id.org/mixs
keywords:
- window
string_serialization: '{float} {unit} x {float} {unit}'
slot_uri: MIXS:0000224
alias: window_size
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: string
window_cond:
name: window_cond
description: The physical condition of the window at the time of sampling
title: window condition
examples:
- value: rupture
from_schema: https://w3id.org/mixs
keywords:
- condition
- window
slot_uri: MIXS:0000849
alias: window_cond
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: DamagedRupturedEnum
window_cover:
name: window_cover
description: The type of window covering
title: window covering
examples:
- value: curtains
from_schema: https://w3id.org/mixs
keywords:
- window
slot_uri: MIXS:0000850
alias: window_cover
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: WindowCoverEnum
window_horiz_pos:
name: window_horiz_pos
description: The horizontal position of the window on the wall
title: window horizontal position
examples:
- value: middle
from_schema: https://w3id.org/mixs
keywords:
- window
slot_uri: MIXS:0000851
alias: window_horiz_pos
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: WindowHorizPosEnum
window_loc:
name: window_loc
description: The relative location of the window within the room
title: window location
examples:
- value: west
from_schema: https://w3id.org/mixs
keywords:
- location
- window
slot_uri: MIXS:0000852
alias: window_loc
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: CompassDirections8Enum
window_mat:
name: window_mat
description: The type of material used to finish a window
title: window material
examples:
- value: wood
from_schema: https://w3id.org/mixs
keywords:
- material
- window
slot_uri: MIXS:0000853
alias: window_mat
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: WindowMatEnum
window_open_freq:
name: window_open_freq
description: The number of times windows are opened per week
title: window open frequency
from_schema: https://w3id.org/mixs
keywords:
- frequency
- window
slot_uri: MIXS:0000246
alias: window_open_freq
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: integer
window_water_mold:
name: window_water_mold
description: Signs of the presence of mold or mildew on the window
title: window signs of water/mold
examples:
- value: no presence of mold visible
from_schema: https://w3id.org/mixs
keywords:
- window
slot_uri: MIXS:0000854
alias: window_water_mold
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: MoldVisibilityEnum
window_status:
name: window_status
description: Defines whether the windows were open or closed during environmental
testing
title: window status
examples:
- value: open
from_schema: https://w3id.org/mixs
keywords:
- status
- window
slot_uri: MIXS:0000855
alias: window_status
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: WindowStatusEnum
window_type:
name: window_type
description: The type of windows
title: window type
examples:
- value: fixed window
from_schema: https://w3id.org/mixs
keywords:
- type
- window
slot_uri: MIXS:0000856
alias: window_type
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: WindowTypeEnum
window_vert_pos:
name: window_vert_pos
description: The vertical position of the window on the wall
title: window vertical position
examples:
- value: middle
from_schema: https://w3id.org/mixs
keywords:
- window
slot_uri: MIXS:0000857
alias: window_vert_pos
owner: MimarksCBuiltEnvironment
domain_of:
- BuiltEnvironment
range: WindowVertPosEnum
class_uri: MIXS:0010009_0016001