Term: taxonomic marker gene recovery software (marker_gene_recov_sw)

Tools used for taxonomic marker gene extraction from assembled genomes

URI: MIXS:0001355

Applicable Checklists and Extensions

NOTE: does not include Combinations (of checklists and extensions) that use marker_gene_recov_sw.

Name	Description	Checklist/Extension
Misag	Minimum Information About a Single Amplified Genome	Checklist
Mimag	Minimum Information About a Metagenome-Assembled Genome	Checklist

Properties

• Range: String

• Cardinality: 0..1

• Structured pattern: ^{software};{version};{parameters}$

Aliases

• x16s_recover_software

Examples

Value
rambl;v2;default parameters
barrnap;0.9;--kingdom bac
metaxa2;2.2;-t bacteria

See Also

• MIXS:0000066

LinkML Source

name: marker_gene_recov_sw
description: Tools used for taxonomic marker gene extraction from assembled genomes
title: taxonomic marker gene recovery software
examples:
- value: rambl;v2;default parameters
- value: barrnap;0.9;--kingdom bac
- value: metaxa2;2.2;-t bacteria
in_subset:
- sequencing
from_schema: https://w3id.org/mixs
see_also:
- MIXS:0000066
aliases:
- x16s_recover_software
keywords:
- recover
- software
- marker gene
- taxonomy
slot_uri: MIXS:0001355
alias: marker_gene_recov_sw
domain_of:
- Mimag
- Misag
range: string
structured_pattern:
  syntax: ^{software};{version};{parameters}$
  interpolated: true
  partial_match: true