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Term: spike-in organism count (spikein_count)

Total cell count of any organism (or group of organisms) per gram, volume or area of sample, should include name of organism followed by count. The method that was used for the enumeration (e.g. qPCR, atp, mpn, etc.) should also be provided (example: total prokaryotes; 3.5e7 cells per ml; qPCR)

URI: MIXS:0001335

Applicable Checklists and Extensions

NOTE: does not include Combinations (of checklists and extensions) that use spikein_count.

Name Description Checklist/Extension
FoodFarmEnvironment A collection of terms appropriate when collecting samples and performing sequ... Extension
FoodHumanFoods A collection of terms appropriate when collecting samples and performing sequ... Extension
FoodAnimalAndAnimalFeed A collection of terms appropriate when collecting samples and performing sequ... Extension

Properties

  • Range: String
  • Cardinality: 0..1

Examples

Value
total prokaryotes;3.5e7 colony forming units per milliliter;qPCR

Annotations

  • Expected_value: organism name;measurement value;enumeration
  • Preferred_unit: colony forming units per milliliter; colony forming units per gram of dry weight

LinkML Source

name: spikein_count
annotations:
  Expected_value:
    tag: Expected_value
    value: organism name;measurement value;enumeration
  Preferred_unit:
    tag: Preferred_unit
    value: colony forming units per milliliter; colony forming units per gram of dry
      weight
description: 'Total cell count of any organism (or group of organisms) per gram, volume
  or area of sample, should include name of organism followed by count. The method
  that was used for the enumeration (e.g. qPCR, atp, mpn, etc.) should also be provided
  (example: total prokaryotes; 3.5e7 cells per ml; qPCR)'
title: spike-in organism count
examples:
- value: total prokaryotes;3.5e7 colony forming units per milliliter;qPCR
from_schema: https://w3id.org/mixs
keywords:
- count
- organism
- spike
string_serialization: '{text};{float} {unit};[ATP|MPN|qPCR|other]'
slot_uri: MIXS:0001335
alias: spikein_count
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodHumanFoods
range: string