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Term: host of the symbiotic host environemental medium (host_of_host_env_med)

Report the environmental material(s) immediately surrounding the symbiotic host organism at the time of sampling. This usually will be a tissue or substance type from the host, but may be another material if the symbiont is external to the host. We recommend using classes from the UBERON ontology, but subclasses of 'environmental material' (http://purl.obolibrary.org/obo/ENVO_00010483) may also be used. EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS . Terms from other OBO ontologies are permissible as long as they reference mass/volume nouns (e.g. air, water, blood) and not discrete, countable entities (e.g. intestines, heart).MIxS . Terms from other OBO ontologies are permissible as long as they reference mass/volume nouns (e.g. air, water, blood) and not discrete, countable entities (e.g. intestines, heart)

URI: MIXS:0001326

Applicable Checklists and Extensions

NOTE: does not include Combinations (of checklists and extensions) that use host_of_host_env_med.

Name Description Checklist/Extension
SymbiontAssociated A collection of terms appropriate when collecting samples and sequencing samp... Extension

Properties

  • Range: String
  • Cardinality: 0..1

Examples

Value
feces[uberon:0001988]

Annotations

  • Expected_value: An ontology term for a material such as a tissue type or excreted substance

LinkML Source

name: host_of_host_env_med
annotations:
  Expected_value:
    tag: Expected_value
    value: An ontology term for a material such as a tissue type or excreted substance
description: 'Report the environmental material(s) immediately surrounding the symbiotic
  host organism at the time of sampling. This usually will be a tissue or substance
  type from the host, but may be another material if the symbiont is external to the
  host. We recommend using classes from the UBERON ontology, but subclasses of ''environmental
  material'' (http://purl.obolibrary.org/obo/ENVO_00010483) may also be used. EnvO
  documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS
  . Terms from other OBO ontologies are permissible as long as they reference mass/volume
  nouns (e.g. air, water, blood) and not discrete, countable entities (e.g. intestines,
  heart).MIxS . Terms from other OBO ontologies are permissible as long as they reference
  mass/volume nouns (e.g. air, water, blood) and not discrete, countable entities
  (e.g. intestines, heart)'
title: host of the symbiotic host environemental medium
examples:
- value: feces[uberon:0001988]
from_schema: https://w3id.org/mixs
keywords:
- environmental
- host
- host.
- symbiosis
string_serialization: '{termLabel} [{termID}]'
slot_uri: MIXS:0001326
alias: host_of_host_env_med
domain_of:
- SymbiontAssociated
range: string