Skip to content

Term: host subspecific genetic lineage (host_subspecf_genlin)

Information about the genetic distinctness of the host organism below the subspecies level e.g., serovar, serotype, biotype, ecotype, variety, cultivar, or any relevant genetic typing schemes like Group I plasmid. Subspecies should not be recorded in this term, but in the NCBI taxonomy. Supply both the lineage name and the lineage rank separated by a colon, e.g., biovar:abc123

URI: MIXS:0001318

Applicable Checklists and Extensions

NOTE: does not include Combinations (of checklists and extensions) that use host_subspecf_genlin.

Name Description Checklist/Extension
HostAssociated A collection of terms appropriate when collecting samples and sequencing samp... Extension
FoodFarmEnvironment A collection of terms appropriate when collecting samples and performing sequ... Extension
Agriculture A collection of terms appropriate when sequencing samples obtained in an agri... Extension
PlantAssociated A collection of terms appropriate when collecting samples and sequencing samp... Extension

Properties

  • Range: String
  • Cardinality: *

Examples

Value
serovar:Newport, variety:glabrum, cultivar: Red Delicious

Annotations

  • Expected_value: Genetic lineage below lowest rank of NCBI taxonomy, which is subspecies, e.g. serovar, biotype, ecotype, variety, cultivar

LinkML Source

name: host_subspecf_genlin
annotations:
  Expected_value:
    tag: Expected_value
    value: Genetic lineage below lowest rank of NCBI taxonomy, which is subspecies,
      e.g. serovar, biotype, ecotype, variety, cultivar
description: Information about the genetic distinctness of the host organism below
  the subspecies level e.g., serovar, serotype, biotype, ecotype, variety, cultivar,
  or any relevant genetic typing schemes like Group I plasmid. Subspecies should not
  be recorded in this term, but in the NCBI taxonomy. Supply both the lineage name
  and the lineage rank separated by a colon, e.g., biovar:abc123
title: host subspecific genetic lineage
examples:
- value: 'serovar:Newport, variety:glabrum, cultivar: Red Delicious'
from_schema: https://w3id.org/mixs
keywords:
- host
- host.
- lineage
string_serialization: '{rank name}:{text}'
slot_uri: MIXS:0001318
alias: host_subspecf_genlin
domain_of:
- Agriculture
- FoodFarmEnvironment
- HostAssociated
- PlantAssociated
range: string
multivalued: true