Term: sample collection method (samp_collect_method)

The method employed for collecting the sample

URI: MIXS:0001225

Applicable Checklists and Extensions

NOTE: does not include Combinations (of checklists and extensions) that use samp_collect_method.

Name	Description	Checklist/Extension
FoodAnimalAndAnimalFeed	A collection of terms appropriate when collecting samples and performing sequ...	Extension
FoodHumanFoods	A collection of terms appropriate when collecting samples and performing sequ...	Extension
MigsVi	Minimal Information about a Genome Sequence: virus	Checklist
MigsOrg	Minimal Information about a Genome Sequence: organelle	Checklist
Mimag	Minimum Information About a Metagenome-Assembled Genome	Checklist
MimarksS	Minimal Information about a Marker Sequence: survey	Checklist
Miuvig	Minimum Information About an Uncultivated Virus Genome	Checklist
MigsPl	Minimal Information about a Genome Sequence: plasmid	Checklist
Mims	Metagenome or Environmental	Checklist
Misag	Minimum Information About a Single Amplified Genome	Checklist
MigsEu	Minimal Information about a Genome Sequence: eukaryote	Checklist
MigsBa	Minimal Information about a Genome Sequence: cultured bacteria/archaea	Checklist
FoodFoodProductionFacility	A collection of terms appropriate when collecting samples and performing sequ...	Extension
MimarksC	Minimal Information about a Marker Sequence: specimen	Checklist
Agriculture	A collection of terms appropriate when sequencing samples obtained in an agri...	Extension

Properties

• Range: String

• Cardinality: 0..1

• Structured pattern: ^{PMID}|{DOI}|{URL}|{text}$

• Regex pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$|([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$

LinkML Source

name: samp_collect_method
description: The method employed for collecting the sample
title: sample collection method
in_subset:
- nucleic acid sequence source
from_schema: https://w3id.org/mixs
keywords:
- method
- sample
slot_uri: MIXS:0001225
alias: samp_collect_method
domain_of:
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$|([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
  syntax: ^{PMID}|{DOI}|{URL}|{text}$
  interpolated: true
  partial_match: true