Term: spike in organism (spikein_org)

Taxonomic information about the spike-in organism(s). This field accepts terms under organism (http://purl.obolibrary.org/obo/NCIT_C14250). This field also accepts identification numbers from NCBI under https://www.ncbi.nlm.nih.gov/taxonomy. Multiple terms can be separated by pipes

URI: MIXS:0001167

Applicable Checklists and Extensions

NOTE: does not include Combinations (of checklists and extensions) that use spikein_org.

Name	Description	Checklist/Extension
FoodFarmEnvironment	A collection of terms appropriate when collecting samples and performing sequ...	Extension
FoodHumanFoods	A collection of terms appropriate when collecting samples and performing sequ...	Extension
FoodAnimalAndAnimalFeed	A collection of terms appropriate when collecting samples and performing sequ...	Extension

Properties

• Range: String

• Cardinality: *

• Structured pattern: ^({termLabel} \[{termID}\])|{integer}$

• Regex pattern: ^(([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\])|[1-9][0-9]*$

Examples

Value
Listeria monocytogenes [NCIT:C86502]

LinkML Source

name: spikein_org
description: Taxonomic information about the spike-in organism(s). This field accepts
  terms under organism (http://purl.obolibrary.org/obo/NCIT_C14250). This field also
  accepts identification numbers from NCBI under https://www.ncbi.nlm.nih.gov/taxonomy.
  Multiple terms can be separated by pipes
title: spike in organism
examples:
- value: Listeria monocytogenes [NCIT:C86502]|28901
from_schema: https://w3id.org/mixs
keywords:
- organism
- spike
slot_uri: MIXS:0001167
alias: spikein_org
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodHumanFoods
range: string
multivalued: true
pattern: ^(([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\])|[1-9][0-9]*$
structured_pattern:
  syntax: ^({termLabel} \[{termID}\])|{integer}$
  interpolated: true
  partial_match: true