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Term: serovar or serotype (serovar_or_serotype)

A characterization of a cell or microorganism based on the antigenic properties of the molecules on its surface. Indicate the name of a serovar or serotype of interest. This field accepts terms under organism (http://purl.obolibrary.org/obo/NCIT_C14250). This field also accepts identification numbers from NCBI under https://www.ncbi.nlm.nih.gov/taxonomy

URI: MIXS:0001157

Applicable Checklists and Extensions

NOTE: does not include Combinations (of checklists and extensions) that use serovar_or_serotype.

Name Description Checklist/Extension
FoodFarmEnvironment A collection of terms appropriate when collecting samples and performing sequ... Extension
FoodHumanFoods A collection of terms appropriate when collecting samples and performing sequ... Extension
FoodAnimalAndAnimalFeed A collection of terms appropriate when collecting samples and performing sequ... Extension

Properties

  • Range: String

  • Cardinality: *

  • Structured pattern: ^({termLabel} \[{termID}\])|{integer}$

  • Regex pattern: ^(([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\])|[1-9][0-9]*$

Examples

Value
Escherichia coli strain O157:H7 [NCIT:C86883]

LinkML Source

name: serovar_or_serotype
description: A characterization of a cell or microorganism based on the antigenic
  properties of the molecules on its surface. Indicate the name of a serovar or serotype
  of interest. This field accepts terms under organism (http://purl.obolibrary.org/obo/NCIT_C14250).
  This field also accepts identification numbers from NCBI under https://www.ncbi.nlm.nih.gov/taxonomy
title: serovar or serotype
examples:
- value: Escherichia coli strain O157:H7 [NCIT:C86883]
from_schema: https://w3id.org/mixs
slot_uri: MIXS:0001157
alias: serovar_or_serotype
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodHumanFoods
range: string
multivalued: true
pattern: ^(([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\])|[1-9][0-9]*$
structured_pattern:
  syntax: ^({termLabel} \[{termID}\])|{integer}$
  interpolated: true
  partial_match: true