Term: sample name (samp_name)
A local identifier or name that for the material sample used for extracting nucleic acids, and subsequent sequencing. It can refer either to the original material collected or to any derived sub-samples. It can have any format, but we suggest that you make it concise, unique and consistent within your lab, and as informative as possible. INSDC requires every sample name from a single Submitter to be unique. Use of a globally unique identifier for the field source_mat_id is recommended in addition to sample_name
URI: MIXS:0001107
Applicable Checklists and Extensions
NOTE: does not include Combinations (of checklists and extensions) that use samp_name.
Name | Description | Checklist/Extension |
---|---|---|
Soil | A collection of terms appropriate when collecting samples and sequencing samp... | Extension |
MigsVi | Minimal Information about a Genome Sequence: virus | Checklist |
WastewaterSludge | A collection of terms appropriate when collecting samples and sequencing samp... | Extension |
MigsBa | Minimal Information about a Genome Sequence: cultured bacteria/archaea | Checklist |
FoodAnimalAndAnimalFeed | A collection of terms appropriate when collecting samples and performing sequ... | Extension |
FoodHumanFoods | A collection of terms appropriate when collecting samples and performing sequ... | Extension |
PlantAssociated | A collection of terms appropriate when collecting samples and sequencing samp... | Extension |
HostAssociated | A collection of terms appropriate when collecting samples and sequencing samp... | Extension |
HumanVaginal | A collection of terms appropriate when collecting samples and sequencing samp... | Extension |
MigsOrg | Minimal Information about a Genome Sequence: organelle | Checklist |
MimarksS | Minimal Information about a Marker Sequence: survey | Checklist |
MigsPl | Minimal Information about a Genome Sequence: plasmid | Checklist |
MigsEu | Minimal Information about a Genome Sequence: eukaryote | Checklist |
FoodFarmEnvironment | A collection of terms appropriate when collecting samples and performing sequ... | Extension |
HumanOral | A collection of terms appropriate when collecting samples and sequencing samp... | Extension |
HumanGut | A collection of terms appropriate when collecting samples and sequencing samp... | Extension |
Air | A collection of terms appropriate when collecting and sequencing samples obta... | Extension |
HydrocarbonResourcesFluidsSwabs | A collection of terms appropriate when collecting samples and sequencing samp... | Extension |
Mimag | Minimum Information About a Metagenome-Assembled Genome | Checklist |
HydrocarbonResourcesCores | A collection of terms appropriate when collecting samples and sequencing samp... | Extension |
MiscellaneousNaturalOrArtificialEnvironment | A collection of generic terms appropriate when collecting and sequencing samp... | Extension |
MicrobialMatBiofilm | A collection of terms appropriate when collecting samples and sequencing samp... | Extension |
Mims | Metagenome or Environmental | Checklist |
SymbiontAssociated | A collection of terms appropriate when collecting samples and sequencing samp... | Extension |
Water | A collection of terms appropriate when collecting samples and sequencing wate... | Extension |
HumanSkin | A collection of terms appropriate when collecting samples and sequencing samp... | Extension |
HumanAssociated | A collection of terms appropriate when collecting samples and sequencing samp... | Extension |
Sediment | A collection of terms appropriate when collecting samples and sequencing samp... | Extension |
Miuvig | Minimum Information About an Uncultivated Virus Genome | Checklist |
Misag | Minimum Information About a Single Amplified Genome | Checklist |
FoodFoodProductionFacility | A collection of terms appropriate when collecting samples and performing sequ... | Extension |
MimarksC | Minimal Information about a Marker Sequence: specimen | Checklist |
BuiltEnvironment | A collection of terms appropriate when collecting samples and sequencing samp... | Extension |
Properties
- Range: String
- Cardinality: 1
Examples
Value |
---|
ISDsoil1 |
LinkML Source
name: samp_name
annotations:
Preferred_unit:
tag: Preferred_unit
value: ''
description: A local identifier or name that for the material sample used for extracting
nucleic acids, and subsequent sequencing. It can refer either to the original material
collected or to any derived sub-samples. It can have any format, but we suggest
that you make it concise, unique and consistent within your lab, and as informative
as possible. INSDC requires every sample name from a single Submitter to be unique.
Use of a globally unique identifier for the field source_mat_id is recommended in
addition to sample_name
title: sample name
examples:
- value: ISDsoil1
in_subset:
- investigation
from_schema: https://w3id.org/mixs
keywords:
- sample
slot_uri: MIXS:0001107
alias: samp_name
domain_of:
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- Air
- BuiltEnvironment
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- WastewaterSludge
- Water
range: string
required: true