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Term: sample type (samp_type)

The type of material from which the sample was obtained. For the Hydrocarbon package, samples include types like core, rock trimmings, drill cuttings, piping section, coupon, pigging debris, solid deposit, produced fluid, produced water, injected water, swabs, etc. For the Food Package, samples are usually categorized as food, body products or tissues, or environmental material. This field accepts terms listed under environmental specimen (http://purl.obolibrary.org/obo/GENEPIO_0001246)

URI: MIXS:0000998

Applicable Checklists and Extensions

NOTE: does not include Combinations (of checklists and extensions) that use samp_type.

Name Description Checklist/Extension
HydrocarbonResourcesFluidsSwabs A collection of terms appropriate when collecting samples and sequencing samp... Extension
FoodFarmEnvironment A collection of terms appropriate when collecting samples and performing sequ... Extension
HydrocarbonResourcesCores A collection of terms appropriate when collecting samples and sequencing samp... Extension
FoodFoodProductionFacility A collection of terms appropriate when collecting samples and performing sequ... Extension

Properties

  • Range: String

  • Cardinality: 1

  • Structured pattern: ^{termLabel} \[{termID}\]$

  • Regex pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$

Examples

Value
built environment sample [GENEPIO:0001248]

LinkML Source

name: samp_type
description: The type of material from which the sample was obtained. For the Hydrocarbon
  package, samples include types like core, rock trimmings, drill cuttings, piping
  section, coupon, pigging debris, solid deposit, produced fluid, produced water,
  injected water, swabs, etc. For the Food Package, samples are usually categorized
  as food, body products or tissues, or environmental material. This field accepts
  terms listed under environmental specimen (http://purl.obolibrary.org/obo/GENEPIO_0001246)
title: sample type
examples:
- value: built environment sample [GENEPIO:0001248]
from_schema: https://w3id.org/mixs
keywords:
- sample
- type
slot_uri: MIXS:0000998
alias: samp_type
domain_of:
- FoodFarmEnvironment
- FoodFoodProductionFacility
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
range: string
required: true
pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$
structured_pattern:
  syntax: ^{termLabel} \[{termID}\]$
  interpolated: true
  partial_match: true