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Term: host phenotype (host_phenotype)

Phenotype of human or other host. Use terms from the phenotypic quality ontology (pato) or the Human Phenotype Ontology (HP)

URI: MIXS:0000874

Applicable Checklists and Extensions

NOTE: does not include Combinations (of checklists and extensions) that use host_phenotype.

Name Description Checklist/Extension
HostAssociated A collection of terms appropriate when collecting samples and sequencing samp... Extension
HumanSkin A collection of terms appropriate when collecting samples and sequencing samp... Extension
HumanAssociated A collection of terms appropriate when collecting samples and sequencing samp... Extension
HumanGut A collection of terms appropriate when collecting samples and sequencing samp... Extension
Agriculture A collection of terms appropriate when sequencing samples obtained in an agri... Extension
HumanVaginal A collection of terms appropriate when collecting samples and sequencing samp... Extension
PlantAssociated A collection of terms appropriate when collecting samples and sequencing samp... Extension
FoodFarmEnvironment A collection of terms appropriate when collecting samples and performing sequ... Extension
SymbiontAssociated A collection of terms appropriate when collecting samples and sequencing samp... Extension
HumanOral A collection of terms appropriate when collecting samples and sequencing samp... Extension

Properties

  • Range: String
  • Cardinality: 0..1

Annotations

  • Expected_value: PATO or HP

LinkML Source

name: host_phenotype
annotations:
  Expected_value:
    tag: Expected_value
    value: PATO or HP
description: Phenotype of human or other host. Use terms from the phenotypic quality
  ontology (pato) or the Human Phenotype Ontology (HP)
title: host phenotype
from_schema: https://w3id.org/mixs
keywords:
- host
- host.
string_serialization: '{termLabel} [{termID}]'
slot_uri: MIXS:0000874
alias: host_phenotype
domain_of:
- Agriculture
- FoodFarmEnvironment
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- PlantAssociated
- SymbiontAssociated
range: string