Skip to content

Term: host body site (host_body_site)

Name of body site where the sample was obtained from, such as a specific organ or tissue (tongue, lung etc...). Use terms from the foundational model of anatomy ontology (fma) or the Uber-anatomy ontology (UBERON)

URI: MIXS:0000867

Applicable Checklists and Extensions

NOTE: does not include Combinations (of checklists and extensions) that use host_body_site.

Name Description Checklist/Extension
HostAssociated A collection of terms appropriate when collecting samples and sequencing samp... Extension
HumanAssociated A collection of terms appropriate when collecting samples and sequencing samp... Extension
HumanGut A collection of terms appropriate when collecting samples and sequencing samp... Extension
HumanVaginal A collection of terms appropriate when collecting samples and sequencing samp... Extension
SymbiontAssociated A collection of terms appropriate when collecting samples and sequencing samp... Extension
HumanOral A collection of terms appropriate when collecting samples and sequencing samp... Extension
HumanSkin A collection of terms appropriate when collecting samples and sequencing samp... Extension

Properties

  • Range: String
  • Cardinality: 0..1

Annotations

  • Expected_value: FMA or UBERON

LinkML Source

name: host_body_site
annotations:
  Expected_value:
    tag: Expected_value
    value: FMA or UBERON
description: Name of body site where the sample was obtained from, such as a specific
  organ or tissue (tongue, lung etc...). Use terms from the foundational model of
  anatomy ontology (fma) or the Uber-anatomy ontology (UBERON)
title: host body site
from_schema: https://w3id.org/mixs
keywords:
- body
- host
- site
string_serialization: '{termLabel} [{termID}]'
slot_uri: MIXS:0000867
alias: host_body_site
domain_of:
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- SymbiontAssociated
range: string