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Term: sample volume or weight for DNA extraction (samp_vol_we_dna_ext)

Volume (ml) or mass (g) of total collected sample processed for DNA extraction. Note: total sample collected should be entered under the term Sample Size (MIXS:0000001)

URI: MIXS:0000111

Applicable Checklists and Extensions

NOTE: does not include Combinations (of checklists and extensions) that use samp_vol_we_dna_ext.

Name Description Checklist/Extension
HydrocarbonResourcesFluidsSwabs A collection of terms appropriate when collecting samples and sequencing samp... Extension
PlantAssociated A collection of terms appropriate when collecting samples and sequencing samp... Extension
MigsPl Minimal Information about a Genome Sequence: plasmid Checklist
MigsVi Minimal Information about a Genome Sequence: virus Checklist
Agriculture A collection of terms appropriate when sequencing samples obtained in an agri... Extension
MicrobialMatBiofilm A collection of terms appropriate when collecting samples and sequencing samp... Extension
Mimag Minimum Information About a Metagenome-Assembled Genome Checklist
FoodHumanFoods A collection of terms appropriate when collecting samples and performing sequ... Extension
Water A collection of terms appropriate when collecting samples and sequencing wate... Extension
MigsBa Minimal Information about a Genome Sequence: cultured bacteria/archaea Checklist
HostAssociated A collection of terms appropriate when collecting samples and sequencing samp... Extension
Misag Minimum Information About a Single Amplified Genome Checklist
Sediment A collection of terms appropriate when collecting samples and sequencing samp... Extension
HumanAssociated A collection of terms appropriate when collecting samples and sequencing samp... Extension
HumanSkin A collection of terms appropriate when collecting samples and sequencing samp... Extension
FoodFoodProductionFacility A collection of terms appropriate when collecting samples and performing sequ... Extension
FoodAnimalAndAnimalFeed A collection of terms appropriate when collecting samples and performing sequ... Extension
FoodFarmEnvironment A collection of terms appropriate when collecting samples and performing sequ... Extension
Miuvig Minimum Information About an Uncultivated Virus Genome Checklist
HumanGut A collection of terms appropriate when collecting samples and sequencing samp... Extension
Air A collection of terms appropriate when collecting and sequencing samples obta... Extension
HumanVaginal A collection of terms appropriate when collecting samples and sequencing samp... Extension
SymbiontAssociated A collection of terms appropriate when collecting samples and sequencing samp... Extension
Mims Metagenome or Environmental Checklist
HydrocarbonResourcesCores A collection of terms appropriate when collecting samples and sequencing samp... Extension
MiscellaneousNaturalOrArtificialEnvironment A collection of generic terms appropriate when collecting and sequencing samp... Extension
MigsOrg Minimal Information about a Genome Sequence: organelle Checklist
MigsEu Minimal Information about a Genome Sequence: eukaryote Checklist
MimarksC Minimal Information about a Marker Sequence: specimen Checklist
Soil A collection of terms appropriate when collecting samples and sequencing samp... Extension
HumanOral A collection of terms appropriate when collecting samples and sequencing samp... Extension
WastewaterSludge A collection of terms appropriate when collecting samples and sequencing samp... Extension
MimarksS Minimal Information about a Marker Sequence: survey Checklist

Properties

  • Range: String

  • Cardinality: 0..1

  • Structured pattern: ^{scientific_float}( *- *{scientific_float})? *{text}$

  • Regex pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$

Examples

Value
1500 milliliter

Annotations

  • Preferred_unit: milliliter, gram, milligram, square centimeter

LinkML Source

name: samp_vol_we_dna_ext
annotations:
  Preferred_unit:
    tag: Preferred_unit
    value: milliliter, gram, milligram, square centimeter
description: 'Volume (ml) or mass (g) of total collected sample processed for DNA
  extraction. Note: total sample collected should be entered under the term Sample
  Size (MIXS:0000001)'
title: sample volume or weight for DNA extraction
examples:
- value: 1500 milliliter
in_subset:
- nucleic acid sequence source
from_schema: https://w3id.org/mixs
keywords:
- dna
- sample
- volume
- weight
slot_uri: MIXS:0000111
alias: samp_vol_we_dna_ext
domain_of:
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- Agriculture
- Air
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- WastewaterSludge
- Water
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
  *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
  syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
  interpolated: true
  partial_match: true