Term: OTU sequence comparison approach (otu_seq_comp_appr)

Tool and thresholds used to compare sequences when computing "species-level" OTUs

URI: MIXS:0000086

Applicable Checklists and Extensions

NOTE: does not include Combinations (of checklists and extensions) that use otu_seq_comp_appr.

Name	Description	Checklist/Extension
Miuvig	Minimum Information About an Uncultivated Virus Genome	Checklist

Properties

• Range: String
• Cardinality: 0..1

Examples

Value
blastn;2.6.0+;e-value cutoff: 0.001

Annotations

• Expected_value: software name, version and relevant parameters

LinkML Source

name: otu_seq_comp_appr
annotations:
  Expected_value:
    tag: Expected_value
    value: software name, version and relevant parameters
description: Tool and thresholds used to compare sequences when computing "species-level"
  OTUs
title: OTU sequence comparison approach
examples:
- value: 'blastn;2.6.0+;e-value cutoff: 0.001'
in_subset:
- sequencing
from_schema: https://w3id.org/mixs
keywords:
- otu
string_serialization: '{software};{version};{parameters}'
slot_uri: MIXS:0000086
alias: otu_seq_comp_appr
domain_of:
- Miuvig
range: string