Term: OTU classification approach (otu_class_appr)

Cutoffs and approach used when clustering species-level OTUs. Note that results from standard 95% ANI / 85% AF clustering should be provided alongside OTUs defined from another set of thresholds, even if the latter are the ones primarily used during the analysis

URI: MIXS:0000085

Applicable Checklists and Extensions

NOTE: does not include Combinations (of checklists and extensions) that use otu_class_appr.

Name	Description	Checklist/Extension
Miuvig	Minimum Information About an Uncultivated Virus Genome	Checklist

Properties

• Range: String

• Cardinality: 0..1

• Structured pattern: ^{integer}%\s*ANI;\s*{integer}%\s*AF;\s*{text}$

Examples

Value
95% ANI;85% AF; greedy incremental clustering

Annotations

• Expected_value: cutoffs and method used

LinkML Source

name: otu_class_appr
annotations:
  Expected_value:
    tag: Expected_value
    value: cutoffs and method used
description: Cutoffs and approach used when clustering species-level OTUs. Note that
  results from standard 95% ANI / 85% AF clustering should be provided alongside OTUs
  defined from another set of thresholds, even if the latter are the ones primarily
  used during the analysis
title: OTU classification approach
examples:
- value: 95% ANI;85% AF; greedy incremental clustering
in_subset:
- sequencing
from_schema: https://w3id.org/mixs
keywords:
- classification
- otu
slot_uri: MIXS:0000085
alias: otu_class_appr
domain_of:
- Miuvig
range: string
structured_pattern:
  syntax: ^{integer}%\s*ANI;\s*{integer}%\s*AF;\s*{text}$
  interpolated: true