Term: completeness approach (compl_appr)
The approach used to determine the completeness of a given genomic assembly, which would typically make use of a set of conserved marker genes or a closely related reference genome. For UViG completeness, include reference genome or group used, and contig feature suggesting a complete genome
URI: MIXS:0000071
Applicable Checklists and Extensions
NOTE: does not include Combinations (of checklists and extensions) that use compl_appr.
| Name | Description | Checklist/Extension |
|---|---|---|
| Mimag | Minimum Information About a Metagenome-Assembled Genome | Checklist |
| Miuvig | Minimum Information About an Uncultivated Virus Genome | Checklist |
| Misag | Minimum Information About a Single Amplified Genome | Checklist |
Properties
- Range: ComplApprEnum
- Cardinality: 0..1
Examples
| Value |
|---|
| other |
Annotations
- Expected_value: text
LinkML Source
name: compl_appr
annotations:
Expected_value:
tag: Expected_value
value: text
description: The approach used to determine the completeness of a given genomic assembly,
which would typically make use of a set of conserved marker genes or a closely related
reference genome. For UViG completeness, include reference genome or group used,
and contig feature suggesting a complete genome
title: completeness approach
examples:
- value: other
description: was other <colon> UViG length compared to the average length of reference
genomes from the P22virus genus (NCBI RefSeq v83)
in_subset:
- sequencing
from_schema: https://w3id.org/mixs
slot_uri: MIXS:0000071
alias: compl_appr
domain_of:
- Mimag
- Misag
- Miuvig
range: ComplApprEnum