Term: completeness software (compl_software)
Tools used for completion estimate, i.e. checkm, anvi'o, busco
URI: MIXS:0000070
Applicable Checklists and Extensions
NOTE: does not include Combinations (of checklists and extensions) that use compl_software.
| Name | Description | Checklist/Extension |
|---|---|---|
| MigsVi | Minimal Information about a Genome Sequence: virus | Checklist |
| MigsOrg | Minimal Information about a Genome Sequence: organelle | Checklist |
| Mimag | Minimum Information About a Metagenome-Assembled Genome | Checklist |
| Miuvig | Minimum Information About an Uncultivated Virus Genome | Checklist |
| MigsPl | Minimal Information about a Genome Sequence: plasmid | Checklist |
| Misag | Minimum Information About a Single Amplified Genome | Checklist |
| MigsEu | Minimal Information about a Genome Sequence: eukaryote | Checklist |
| MigsBa | Minimal Information about a Genome Sequence: cultured bacteria/archaea | Checklist |
Properties
- Range: String
- Cardinality: 0..1
Examples
| Value |
|---|
| checkm |
Annotations
- Expected_value: names and versions of software(s) used
LinkML Source
name: compl_software
annotations:
Expected_value:
tag: Expected_value
value: names and versions of software(s) used
description: Tools used for completion estimate, i.e. checkm, anvi'o, busco
title: completeness software
examples:
- value: checkm
in_subset:
- sequencing
from_schema: https://w3id.org/mixs
keywords:
- software
string_serialization: '{software};{version}'
slot_uri: MIXS:0000070
alias: compl_software
domain_of:
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- Misag
- Miuvig
range: string