Term: completeness score (compl_score)

Completeness score is typically based on either the fraction of markers found as compared to a database or the percent of a genome found as compared to a closely related reference genome. High Quality Draft: >90%, Medium Quality Draft: >50%, and Low Quality Draft: < 50% should have the indicated completeness scores

URI: MIXS:0000069

Applicable Checklists and Extensions

NOTE: does not include Combinations (of checklists and extensions) that use compl_score.

Name	Description	Checklist/Extension
MigsBa	Minimal Information about a Genome Sequence: cultured bacteria/archaea	Checklist
MigsOrg	Minimal Information about a Genome Sequence: organelle	Checklist
Misag	Minimum Information About a Single Amplified Genome	Checklist
MigsEu	Minimal Information about a Genome Sequence: eukaryote	Checklist
MigsPl	Minimal Information about a Genome Sequence: plasmid	Checklist
MigsVi	Minimal Information about a Genome Sequence: virus	Checklist
Mimag	Minimum Information About a Metagenome-Assembled Genome	Checklist
Miuvig	Minimum Information About an Uncultivated Virus Genome	Checklist

Properties

Range: String
Cardinality: 0..1

Examples

Value
med;60%

Annotations

Expected_value: quality;percent completeness

LinkML Source

name: compl_score
annotations:
  Expected_value:
    tag: Expected_value
    value: quality;percent completeness
description: 'Completeness score is typically based on either the fraction of markers
  found as compared to a database or the percent of a genome found as compared to
  a closely related reference genome. High Quality Draft: >90%, Medium Quality Draft:
  >50%, and Low Quality Draft: < 50% should have the indicated completeness scores'
title: completeness score
examples:
- value: med;60%
in_subset:
- sequencing
from_schema: https://w3id.org/mixs
keywords:
- score
string_serialization: '[high|med|low];{percentage}'
slot_uri: MIXS:0000069
alias: compl_score
domain_of:
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- Misag
- Miuvig
range: string